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Record Information
Version2.0
Created at2020-12-09 06:24:32 UTC
Updated at2021-07-15 17:01:47 UTC
NP-MRD IDNP0008917
Secondary Accession NumbersNone
Natural Product Identification
Common NameZeamine
Provided ByNPAtlasNPAtlas Logo
DescriptionZeamine belongs to the class of organic compounds known as n-acyl amines. N-acyl amines are compounds containing a fatty acid moiety linked to an amine group through an ester linkage. Zeamine is found in Dickeya zeae and Serratia plymuthica. Zeamine was first documented in 2010 (PMID: 20024369). Based on a literature review a small amount of articles have been published on Zeamine (PMID: 34456933) (PMID: 33693901) (PMID: 33079956) (PMID: 31824457).
Structure
Thumb
Synonyms
ValueSource
6-Amino-3,5-dihydroxy-7-methyl-N-(11,19,27,35-tetraamino-3-hydroxytetracontyl)octanimidateGenerator
Chemical FormulaC49H104N6O4
Average Mass841.4090 Da
Monoisotopic Mass840.81191 Da
IUPAC Name(3R,5R,6S)-6-amino-3,5-dihydroxy-7-methyl-N-[(3R,11R,19S,27R,35S)-11,19,27,35-tetraamino-3-hydroxytetracontyl]octanamide
Traditional Name(3R,5R,6S)-6-amino-3,5-dihydroxy-7-methyl-N-[(3R,11R,19S,27R,35S)-11,19,27,35-tetraamino-3-hydroxytetracontyl]octanamide
CAS Registry NumberNot Available
SMILES
CCCCCC(N)CCCCCCCC(N)CCCCCCCC(N)CCCCCCCC(N)CCCCCCCC(O)CCNC(=O)CC(O)CC(O)C(N)C(C)C
InChI Identifier
InChI=1S/C49H104N6O4/c1-4-5-18-27-41(50)28-19-10-6-11-20-29-42(51)30-21-12-7-13-22-31-43(52)32-23-14-8-15-24-33-44(53)34-25-16-9-17-26-35-45(56)36-37-55-48(59)39-46(57)38-47(58)49(54)40(2)3/h40-47,49,56-58H,4-39,50-54H2,1-3H3,(H,55,59)
InChI KeyVLJURIPGVYZMCR-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Dickeya zeaeNPAtlas
Serratia plymuthicaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as n-acyl amines. N-acyl amines are compounds containing a fatty acid moiety linked to an amine group through an ester linkage.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty amides
Direct ParentN-acyl amines
Alternative Parents
Substituents
  • N-acyl-amine
  • 1,2-aminoalcohol
  • Amino acid or derivatives
  • Carboxamide group
  • Secondary alcohol
  • Secondary carboxylic acid amide
  • Carboxylic acid derivative
  • Primary amine
  • Organooxygen compound
  • Organonitrogen compound
  • Organic nitrogen compound
  • Primary aliphatic amine
  • Carbonyl group
  • Amine
  • Alcohol
  • Hydrocarbon derivative
  • Organic oxide
  • Organic oxygen compound
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP6ALOGPS
logP8.5ChemAxon
logS-6.8ALOGPS
pKa (Strongest Acidic)14.32ChemAxon
pKa (Strongest Basic)11.07ChemAxon
Physiological Charge5ChemAxon
Hydrogen Acceptor Count9ChemAxon
Hydrogen Donor Count9ChemAxon
Polar Surface Area219.89 ŲChemAxon
Rotatable Bond Count45ChemAxon
Refractivity252.07 m³·mol⁻¹ChemAxon
Polarizability108.14 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA009575
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78444663
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound46186780
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Wu J, Zhang HB, Xu JL, Cox RJ, Simpson TJ, Zhang LH: 13C labeling reveals multiple amination reactions in the biosynthesis of a novel polyketide polyamine antibiotic zeamine from Dickeya zeae. Chem Commun (Camb). 2010 Jan 14;46(2):333-5. doi: 10.1039/b916307g. Epub 2009 Nov 13. [PubMed:20024369 ]
  2. Boluk G, Arizala D, Dobhal S, Zhang J, Hu J, Alvarez AM, Arif M: Genomic and Phenotypic Biology of Novel Strains of Dickeya zeae Isolated From Pineapple and Taro in Hawaii: Insights Into Genome Plasticity, Pathogenicity, and Virulence Determinants. Front Plant Sci. 2021 Aug 11;12:663851. doi: 10.3389/fpls.2021.663851. eCollection 2021. [PubMed:34456933 ]
  3. Wenski SL, Berghaus N, Keller N, Bode HB: Structure and biosynthesis of deoxy-polyamine in Xenorhabdus bovienii. J Ind Microbiol Biotechnol. 2021 Jun 4;48(3-4). pii: 6119917. doi: 10.1093/jimb/kuab006. [PubMed:33693901 ]
  4. Zhang J, Arif M, Shen H, Hu J, Sun D, Pu X, Yang Q, Lin B: Genomic divergence between Dickeya zeae strain EC2 isolated from rice and previously identified strains, suggests a different rice foot rot strain. PLoS One. 2020 Oct 20;15(10):e0240908. doi: 10.1371/journal.pone.0240908. eCollection 2020. [PubMed:33079956 ]
  5. Donmez Ozkan H, Cimen H, Ulug D, Wenski S, Yigit Ozer S, Telli M, Aydin N, Bode HB, Hazir S: Nematode-Associated Bacteria: Production of Antimicrobial Agent as a Presumptive Nominee for Curing Endodontic Infections Caused by Enterococcus faecalis. Front Microbiol. 2019 Nov 22;10:2672. doi: 10.3389/fmicb.2019.02672. eCollection 2019. [PubMed:31824457 ]