NP-MRD: Showing NP-Card for Hydroisoflavone B (NP0008805)

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Record Information

Version

2.0

Created at

2020-12-09 06:18:18 UTC

Updated at

2026-02-07 16:01:04 UTC

NP-MRD ID

NP0008805

Natural Product DOI

https://doi.org/10.57994/5642

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Hydroisoflavone B

Provided By

NPAtlas

Description

Hydroisoflavone B belongs to the class of organic compounds known as chromones. Chromones are compounds containing a benzopyran-4-one moiety. Hydroisoflavone B is found in Streptomyces mirabilis. Hydroisoflavone B was first documented in 2009 (PMID: 19818612). Based on a literature review very few articles have been published on Hydroisoflavone B.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242106303D          

 38 40  0  0  0  0            999 V2000
    1.1344   -0.8446    1.7151 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2662   -0.2902    0.6190 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1686    0.2729   -0.0343 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1888    0.2414    0.5357 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2070    0.9083    1.7830 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6312   -1.1727    0.8281 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1198   -1.2533    1.0889 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9406   -0.5798    0.0297 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.2729   -0.8073    0.2461 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5692    0.9009    0.1131 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3515    1.6870   -0.6958 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1184    0.9716   -0.3739 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4543    0.8609   -1.2512 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6614    0.8927   -1.7623 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7261    0.3757   -1.1838 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9768    0.4345   -1.7622 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0733   -0.1151   -1.1341 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3488   -0.0652   -1.7049 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8848   -0.7219    0.0822 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6349   -0.7809    0.6606 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4344   -1.3943    1.8939 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5199   -0.2356    0.0475 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7409    1.7662    1.7367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1508   -1.4985    1.7755 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3733   -1.8587   -0.0232 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2896   -0.6681    2.0402 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3891   -2.2979    1.2688 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5858   -0.9168   -0.9684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7678    0.0226   -0.0462 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5780    1.1888    1.1710 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7380    2.4137   -0.1349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1278    0.5191   -1.3954 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8713    2.0506   -0.3724 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3270    1.3346   -1.8535 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1213    0.9079   -2.7102 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9707    0.7079   -1.5168 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7437   -1.1587    0.5860 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2192   -1.7976    2.3622 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  1  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  1  0  0  0  0
  3 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  2  0  0  0  0
 22  2  1  0  0  0  0
 12  4  1  0  0  0  0
 22 15  1  0  0  0  0
  5 23  1  0  0  0  0
  6 24  1  0  0  0  0
  6 25  1  0  0  0  0
  7 26  1  0  0  0  0
  7 27  1  0  0  0  0
  8 28  1  6  0  0  0
  9 29  1  0  0  0  0
 10 30  1  1  0  0  0
 11 31  1  0  0  0  0
 12 32  1  0  0  0  0
 12 33  1  0  0  0  0
 13 34  1  0  0  0  0
 16 35  1  0  0  0  0
 18 36  1  0  0  0  0
 19 37  1  0  0  0  0
 21 38  1  0  0  0  0
M  END

     RDKit          3D

 38 40  0  0  0  0  0  0  0  0999 V2000
    1.1344   -0.8446    1.7151 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2662   -0.2902    0.6190 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1686    0.2729   -0.0343 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1888    0.2414    0.5357 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2070    0.9083    1.7830 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6312   -1.1727    0.8281 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1198   -1.2533    1.0889 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9406   -0.5798    0.0297 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.2729   -0.8073    0.2461 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5692    0.9009    0.1131 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3515    1.6870   -0.6958 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1184    0.9716   -0.3739 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4543    0.8609   -1.2512 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6614    0.8927   -1.7623 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7261    0.3757   -1.1838 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9768    0.4345   -1.7622 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0733   -0.1151   -1.1341 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3488   -0.0652   -1.7049 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8848   -0.7219    0.0822 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6349   -0.7809    0.6606 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4344   -1.3943    1.8939 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5199   -0.2356    0.0475 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7409    1.7662    1.7367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1508   -1.4985    1.7755 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3733   -1.8587   -0.0232 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2896   -0.6681    2.0402 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3891   -2.2979    1.2688 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5858   -0.9168   -0.9684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7678    0.0226   -0.0462 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5780    1.1888    1.1710 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7380    2.4137   -0.1349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1278    0.5191   -1.3954 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8713    2.0506   -0.3724 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3270    1.3346   -1.8535 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1213    0.9079   -2.7102 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9707    0.7079   -1.5168 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7437   -1.1587    0.5860 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2192   -1.7976    2.3622 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  1  1
  4  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 10 12  1  0
  3 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 17 19  2  0
 19 20  1  0
 20 21  1  0
 20 22  2  0
 22  2  1  0
 12  4  1  0
 22 15  1  0
  5 23  1  0
  6 24  1  0
  6 25  1  0
  7 26  1  0
  7 27  1  0
  8 28  1  6
  9 29  1  0
 10 30  1  1
 11 31  1  0
 12 32  1  0
 12 33  1  0
 13 34  1  0
 16 35  1  0
 18 36  1  0
 19 37  1  0
 21 38  1  0
M  END


  Mrv1652306242106303D          

 38 40  0  0  0  0            999 V2000
    1.1344   -0.8446    1.7151 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2662   -0.2902    0.6190 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1686    0.2729   -0.0343 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1888    0.2414    0.5357 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2070    0.9083    1.7830 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6312   -1.1727    0.8281 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1198   -1.2533    1.0889 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9406   -0.5798    0.0297 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.2729   -0.8073    0.2461 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5692    0.9009    0.1131 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3515    1.6870   -0.6958 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1184    0.9716   -0.3739 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4543    0.8609   -1.2512 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6614    0.8927   -1.7623 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7261    0.3757   -1.1838 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9768    0.4345   -1.7622 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0733   -0.1151   -1.1341 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3488   -0.0652   -1.7049 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8848   -0.7219    0.0822 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6349   -0.7809    0.6606 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4344   -1.3943    1.8939 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5199   -0.2356    0.0475 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7409    1.7662    1.7367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1508   -1.4985    1.7755 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3733   -1.8587   -0.0232 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2896   -0.6681    2.0402 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3891   -2.2979    1.2688 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5858   -0.9168   -0.9684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7678    0.0226   -0.0462 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5780    1.1888    1.1710 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7380    2.4137   -0.1349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1278    0.5191   -1.3954 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8713    2.0506   -0.3724 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3270    1.3346   -1.8535 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1213    0.9079   -2.7102 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9707    0.7079   -1.5168 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7437   -1.1587    0.5860 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2192   -1.7976    2.3622 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  1  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  1  0  0  0  0
  3 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  2  0  0  0  0
 22  2  1  0  0  0  0
 12  4  1  0  0  0  0
 22 15  1  0  0  0  0
  5 23  1  0  0  0  0
  6 24  1  0  0  0  0
  6 25  1  0  0  0  0
  7 26  1  0  0  0  0
  7 27  1  0  0  0  0
  8 28  1  6  0  0  0
  9 29  1  0  0  0  0
 10 30  1  1  0  0  0
 11 31  1  0  0  0  0
 12 32  1  0  0  0  0
 12 33  1  0  0  0  0
 13 34  1  0  0  0  0
 16 35  1  0  0  0  0
 18 36  1  0  0  0  0
 19 37  1  0  0  0  0
 21 38  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0008805

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C([H])C(O[H])=C2C(=O)C(=C([H])OC2=C1[H])[C@]1(O[H])C([H])([H])C([H])([H])[C@@]([H])(O[H])[C@]([H])(O[H])C1([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C15H16O7/c16-7-3-10(18)13-12(4-7)22-6-8(14(13)20)15(21)2-1-9(17)11(19)5-15/h3-4,6,9,11,16-19,21H,1-2,5H2/t9-,11-,15+/m1/s1

> <INCHI_KEY>
LYKJAYDNDPZVTH-OSQNNJELSA-N

> <FORMULA>
C15H16O7

> <MOLECULAR_WEIGHT>
308.286

> <EXACT_MASS>
308.089602855

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
38

> <JCHEM_AVERAGE_POLARIZABILITY>
30.30297283043315

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5,7-dihydroxy-3-[(1S,3R,4R)-1,3,4-trihydroxycyclohexyl]-4H-chromen-4-one

> <ALOGPS_LOGP>
-0.05

> <JCHEM_LOGP>
0.0157523540000003

> <ALOGPS_LOGS>
-1.72

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
8.147479005566641

> <JCHEM_PKA_STRONGEST_ACIDIC>
6.544443474429183

> <JCHEM_PKA_STRONGEST_BASIC>
-3.149080998048148

> <JCHEM_POLAR_SURFACE_AREA>
127.45000000000002

> <JCHEM_REFRACTIVITY>
75.27289999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.83e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5,7-dihydroxy-3-[(1S,3R,4R)-1,3,4-trihydroxycyclohexyl]chromen-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 38 40  0  0  0  0  0  0  0  0999 V2000
    1.1344   -0.8446    1.7151 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2662   -0.2902    0.6190 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1686    0.2729   -0.0343 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1888    0.2414    0.5357 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2070    0.9083    1.7830 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6312   -1.1727    0.8281 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1198   -1.2533    1.0889 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9406   -0.5798    0.0297 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.2729   -0.8073    0.2461 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5692    0.9009    0.1131 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3515    1.6870   -0.6958 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1184    0.9716   -0.3739 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4543    0.8609   -1.2512 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6614    0.8927   -1.7623 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7261    0.3757   -1.1838 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9768    0.4345   -1.7622 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0733   -0.1151   -1.1341 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3488   -0.0652   -1.7049 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8848   -0.7219    0.0822 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6349   -0.7809    0.6606 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4344   -1.3943    1.8939 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5199   -0.2356    0.0475 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7409    1.7662    1.7367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1508   -1.4985    1.7755 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3733   -1.8587   -0.0232 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2896   -0.6681    2.0402 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3891   -2.2979    1.2688 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5858   -0.9168   -0.9684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7678    0.0226   -0.0462 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5780    1.1888    1.1710 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7380    2.4137   -0.1349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1278    0.5191   -1.3954 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8713    2.0506   -0.3724 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3270    1.3346   -1.8535 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1213    0.9079   -2.7102 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9707    0.7079   -1.5168 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7437   -1.1587    0.5860 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2192   -1.7976    2.3622 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  1  1
  4  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 10 12  1  0
  3 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 17 19  2  0
 19 20  1  0
 20 21  1  0
 20 22  2  0
 22  2  1  0
 12  4  1  0
 22 15  1  0
  5 23  1  0
  6 24  1  0
  6 25  1  0
  7 26  1  0
  7 27  1  0
  8 28  1  6
  9 29  1  0
 10 30  1  1
 11 31  1  0
 12 32  1  0
 12 33  1  0
 13 34  1  0
 16 35  1  0
 18 36  1  0
 19 37  1  0
 21 38  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  O   UNK     0       1.134  -0.845   1.715  0.00  0.00           O+0
HETATM    2  C   UNK     0       1.266  -0.290   0.619  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.169   0.273  -0.034  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.189   0.241   0.536  0.00  0.00           C+0
HETATM    5  O   UNK     0      -1.207   0.908   1.783  0.00  0.00           O+0
HETATM    6  C   UNK     0      -1.631  -1.173   0.828  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.120  -1.253   1.089  0.00  0.00           C+0
HETATM    8  C   UNK     0      -3.941  -0.580   0.030  0.00  0.00           C+0
HETATM    9  O   UNK     0      -5.273  -0.807   0.246  0.00  0.00           O+0
HETATM   10  C   UNK     0      -3.569   0.901   0.113  0.00  0.00           C+0
HETATM   11  O   UNK     0      -4.351   1.687  -0.696  0.00  0.00           O+0
HETATM   12  C   UNK     0      -2.118   0.972  -0.374  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.454   0.861  -1.251  0.00  0.00           C+0
HETATM   14  O   UNK     0       1.661   0.893  -1.762  0.00  0.00           O+0
HETATM   15  C   UNK     0       2.726   0.376  -1.184  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.977   0.435  -1.762  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.073  -0.115  -1.134  0.00  0.00           C+0
HETATM   18  O   UNK     0       6.349  -0.065  -1.705  0.00  0.00           O+0
HETATM   19  C   UNK     0       4.885  -0.722   0.082  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.635  -0.781   0.661  0.00  0.00           C+0
HETATM   21  O   UNK     0       3.434  -1.394   1.894  0.00  0.00           O+0
HETATM   22  C   UNK     0       2.520  -0.236   0.048  0.00  0.00           C+0
HETATM   23  H   UNK     0      -0.741   1.766   1.737  0.00  0.00           H+0
HETATM   24  H   UNK     0      -1.151  -1.498   1.776  0.00  0.00           H+0
HETATM   25  H   UNK     0      -1.373  -1.859  -0.023  0.00  0.00           H+0
HETATM   26  H   UNK     0      -3.290  -0.668   2.040  0.00  0.00           H+0
HETATM   27  H   UNK     0      -3.389  -2.298   1.269  0.00  0.00           H+0
HETATM   28  H   UNK     0      -3.586  -0.917  -0.968  0.00  0.00           H+0
HETATM   29  H   UNK     0      -5.768   0.023  -0.046  0.00  0.00           H+0
HETATM   30  H   UNK     0      -3.578   1.189   1.171  0.00  0.00           H+0
HETATM   31  H   UNK     0      -4.738   2.414  -0.135  0.00  0.00           H+0
HETATM   32  H   UNK     0      -2.128   0.519  -1.395  0.00  0.00           H+0
HETATM   33  H   UNK     0      -1.871   2.051  -0.372  0.00  0.00           H+0
HETATM   34  H   UNK     0      -0.327   1.335  -1.853  0.00  0.00           H+0
HETATM   35  H   UNK     0       4.121   0.908  -2.710  0.00  0.00           H+0
HETATM   36  H   UNK     0       6.971   0.708  -1.517  0.00  0.00           H+0
HETATM   37  H   UNK     0       5.744  -1.159   0.586  0.00  0.00           H+0
HETATM   38  H   UNK     0       4.219  -1.798   2.362  0.00  0.00           H+0
CONECT    1    2                                                            
CONECT    2    1    3   22                                                  
CONECT    3    2    4   13                                                  
CONECT    4    3    5    6   12                                             
CONECT    5    4   23                                                       
CONECT    6    4    7   24   25                                             
CONECT    7    6    8   26   27                                             
CONECT    8    7    9   10   28                                             
CONECT    9    8   29                                                       
CONECT   10    8   11   12   30                                             
CONECT   11   10   31                                                       
CONECT   12   10    4   32   33                                             
CONECT   13    3   14   34                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   22                                                  
CONECT   16   15   17   35                                                  
CONECT   17   16   18   19                                                  
CONECT   18   17   36                                                       
CONECT   19   17   20   37                                                  
CONECT   20   19   21   22                                                  
CONECT   21   20   38                                                       
CONECT   22   20    2   15                                                  
CONECT   23    5                                                            
CONECT   24    6                                                            
CONECT   25    6                                                            
CONECT   26    7                                                            
CONECT   27    7                                                            
CONECT   28    8                                                            
CONECT   29    9                                                            
CONECT   30   10                                                            
CONECT   31   11                                                            
CONECT   32   12                                                            
CONECT   33   12                                                            
CONECT   34   13                                                            
CONECT   35   16                                                            
CONECT   36   18                                                            
CONECT   37   19                                                            
CONECT   38   21                                                            
MASTER        0    0    0    0    0    0    0    0   38    0   80    0
END

RDKit          3D

38 40  0  0  0  0  0  0  0  0999 V2000
    1.1344   -0.8446    1.7151 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2662   -0.2902    0.6190 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1686    0.2729   -0.0343 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1888    0.2414    0.5357 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2070    0.9083    1.7830 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6312   -1.1727    0.8281 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1198   -1.2533    1.0889 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9406   -0.5798    0.0297 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.2729   -0.8073    0.2461 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5692    0.9009    0.1131 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3515    1.6870   -0.6958 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1184    0.9716   -0.3739 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4543    0.8609   -1.2512 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6614    0.8927   -1.7623 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7261    0.3757   -1.1838 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9768    0.4345   -1.7622 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0733   -0.1151   -1.1341 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3488   -0.0652   -1.7049 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8848   -0.7219    0.0822 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6349   -0.7809    0.6606 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4344   -1.3943    1.8939 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5199   -0.2356    0.0475 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7409    1.7662    1.7367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1508   -1.4985    1.7755 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3733   -1.8587   -0.0232 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2896   -0.6681    2.0402 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3891   -2.2979    1.2688 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5858   -0.9168   -0.9684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7678    0.0226   -0.0462 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5780    1.1888    1.1710 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7380    2.4137   -0.1349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1278    0.5191   -1.3954 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8713    2.0506   -0.3724 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3270    1.3346   -1.8535 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1213    0.9079   -2.7102 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9707    0.7079   -1.5168 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7437   -1.1587    0.5860 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2192   -1.7976    2.3622 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  1  1
  4  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 10 12  1  0
  3 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 17 19  2  0
 19 20  1  0
 20 21  1  0
 20 22  2  0
 22  2  1  0
 12  4  1  0
 22 15  1  0
  5 23  1  0
  6 24  1  0
  6 25  1  0
  7 26  1  0
  7 27  1  0
  8 28  1  6
  9 29  1  0
 10 30  1  1
 11 31  1  0
 12 32  1  0
 12 33  1  0
 13 34  1  0
 16 35  1  0
 18 36  1  0
 19 37  1  0
 21 38  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₁₅H₁₆O₇

Average Mass

308.2860 Da

Monoisotopic Mass

308.08960 Da

IUPAC Name

5,7-dihydroxy-3-[(1S,3R,4R)-1,3,4-trihydroxycyclohexyl]-4H-chromen-4-one

Traditional Name

5,7-dihydroxy-3-[(1S,3R,4R)-1,3,4-trihydroxycyclohexyl]chromen-4-one

CAS Registry Number

Not Available

SMILES

O[C@@H]1CC[C@](O)(C[C@H]1O)C1=COC2=CC(O)=CC(O)=C2C1=O

InChI Identifier

InChI=1S/C15H16O7/c16-7-3-10(18)13-12(4-7)22-6-8(14(13)20)15(21)2-1-9(17)11(19)5-15/h3-4,6,9,11,16-19,21H,1-2,5H2/t9-,11-,15+/m1/s1

InChI Key

LYKJAYDNDPZVTH-OSQNNJELSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 150 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 250 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 225 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, Methanol-d4, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, Dimethylsulfoxide-d6, simulated)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹H NMR Spectrum (1D, 500.0, Dimethylsulfoxide-d6, simulated)	epoynton@sfu.ca	Not Available	Not Available	2026-02-07	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125.0, Methanol-d4, simulated)	epoynton@sfu.ca	Not Available	Not Available	2026-02-07	View Spectrum

Species

Species of Origin

Species Name	Source	Reference
Streptomyces mirabilis		Not Available
Streptomyces mirabilis	NPAtlas	19818612

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as chromones. Chromones are compounds containing a benzopyran-4-one moiety.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzopyrans

Sub Class

1-benzopyrans

Direct Parent

Chromones

Alternative Parents

Substituents

Chromone
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Cyclohexanol
Pyranone
Cyclitol or derivatives
Pyran
Benzenoid
Cyclic alcohol
Heteroaromatic compound
Tertiary alcohol
Vinylogous acid
Secondary alcohol
Polyol
Oxacycle
Organic oxygen compound
Organooxygen compound
Hydrocarbon derivative
Alcohol
Organic oxide
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.05	ALOGPS
logP	0.016	ChemAxon
logS	-1.7	ALOGPS
pKa (Strongest Acidic)	6.54	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	127.45 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	75.27 m³·mol⁻¹	ChemAxon
Polarizability	30.3 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA010132

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

24660473

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

46879794

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Ndejouong Ble S, Sattler I, Dahse HM, Kothe E, Hertweck C: Isoflavones with unusually modified B-rings and their evaluation as antiproliferative agents. Bioorg Med Chem Lett. 2009 Nov 15;19(22):6473-6. doi: 10.1016/j.bmcl.2009.08.084. Epub 2009 Aug 28. [PubMed:19818612 ]
DOI: 10.1016/j.bmcl.2009.08.084
PMID: 19818612

Showing NP-Card for Hydroisoflavone B (NP0008805)

MOL for NP0008805 (Hydroisoflavone B)

3D MOL for NP0008805 (Hydroisoflavone B)

3D SDF for NP0008805 (Hydroisoflavone B)

3D-SDF for NP0008805 (Hydroisoflavone B)

PDB for NP0008805 (Hydroisoflavone B)

3D PDB for NP0008805 (Hydroisoflavone B)

SMILES for NP0008805 (Hydroisoflavone B)

INCHI for NP0008805 (Hydroisoflavone B)

Structure for NP0008805 (Hydroisoflavone B)

3D Structure for NP0008805 (Hydroisoflavone B)