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Record Information
Version2.0
Created at2020-12-09 06:12:34 UTC
Updated at2021-07-15 17:01:05 UTC
NP-MRD IDNP0008671
Secondary Accession NumbersNone
Natural Product Identification
Common NameBravomicin A
Provided ByNPAtlasNPAtlas Logo
Description4-{2-[3-(Butan-2-yl)-9,14-dihydroxy-8-methoxy-1,5,10,15,16-pentaoxo-1,2,5,10,15,16-hexahydro-2-azahexaphen-2-yl]acetyl}-6-hydroxy-5-methyl-2,3,4,5-tetrahydropyrazine-2-carboxylic acid belongs to the class of organic compounds known as naphthacenes. Naphthacenes are compounds containing a naphthacene moiety, which is a polyaromatic hydrocarbon made of four linearly fused benzene rings. Bravomicin A is found in Micromonospora echinospora. Bravomicin A was first documented in 2009 (PMID: 19680283). Based on a literature review very few articles have been published on 4-{2-[3-(butan-2-yl)-9,14-dihydroxy-8-methoxy-1,5,10,15,16-pentaoxo-1,2,5,10,15,16-hexahydro-2-azahexaphen-2-yl]acetyl}-6-hydroxy-5-methyl-2,3,4,5-tetrahydropyrazine-2-carboxylic acid.
Structure
Thumb
Synonyms
ValueSource
4-{2-[3-(butan-2-yl)-9,14-dihydroxy-8-methoxy-1,5,10,15,16-pentaoxo-1,2,5,10,15,16-hexahydro-2-azahexaphen-2-yl]acetyl}-6-hydroxy-5-methyl-2,3,4,5-tetrahydropyrazine-2-carboxylateGenerator
Chemical FormulaC38H31N3O12
Average Mass721.6750 Da
Monoisotopic Mass721.19077 Da
IUPAC Name(2S,5S)-4-(2-{3-[(2S)-butan-2-yl]-9,14-dihydroxy-8-methoxy-1,5,10,15,16-pentaoxo-1,2,5,10,15,16-hexahydro-2-azahexaphen-2-yl}acetyl)-5-methyl-6-oxopiperazine-2-carboxylic acid
Traditional Name(2S,5S)-4-(2-{3-[(2S)-butan-2-yl]-9,14-dihydroxy-8-methoxy-1,5,10,15,16-pentaoxo-2-azahexaphen-2-yl}acetyl)-5-methyl-6-oxopiperazine-2-carboxylic acid
CAS Registry NumberNot Available
SMILES
CCC(C)C1=CC2=C(C(=O)N1CC(=O)N1CC(NC(=O)C1C)C(O)=O)C(=O)C1=C(C=CC3=C1C(=O)C1=C(O)C4=CC=CC(=O)C4=C(O)C1=C3OC)C2=O
InChI Identifier
InChI=1S/C38H31N3O12/c1-5-14(2)21-11-19-27(37(50)41(21)13-23(43)40-12-20(38(51)52)39-36(49)15(40)3)33(47)25-17(30(19)44)9-10-18-26(25)34(48)28-29(35(18)53-4)32(46)24-16(31(28)45)7-6-8-22(24)42/h6-11,14-15,20,45-46H,5,12-13H2,1-4H3,(H,39,49)(H,51,52)
InChI KeyVNIZMUALEAHAJX-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Micromonospora echinosporaNPAtlas
Chemical Taxonomy
Description Belongs to the class of organic compounds known as naphthacenes. Naphthacenes are compounds containing a naphthacene moiety, which is a polyaromatic hydrocarbon made of four linearly fused benzene rings.
KingdomOrganic compounds
Super ClassBenzenoids
ClassNaphthacenes
Sub ClassNot Available
Direct ParentNaphthacenes
Alternative Parents
Substituents
  • Tetracene
  • Phenanthrene
  • Isoquinoline quinone
  • 1-naphthol
  • Isoquinolone
  • Isoquinoline
  • Alpha-amino acid or derivatives
  • Hydroquinone
  • Anisole
  • Pyridinone
  • Alkyl aryl ether
  • Pyridine
  • Heteroaromatic compound
  • Vinylogous amide
  • Vinylogous acid
  • Cyclic carboximidic acid
  • Tertiary carboxylic acid amide
  • Lactam
  • Carboxamide group
  • Azacycle
  • Organoheterocyclic compound
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Monocarboxylic acid or derivatives
  • Ether
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Carbonyl group
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.35ALOGPS
logP-0.94ChemAxon
logS-5ALOGPS
pKa (Strongest Acidic)3.45ChemAxon
pKa (Strongest Basic)-3.6ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count12ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area224.99 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity191.8 m³·mol⁻¹ChemAxon
Polarizability74.22 ųChemAxon
Number of Rings7ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA001424
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78444537
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound135927984
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Banskota AH, Aouidate M, Sorensen D, Ibrahim A, Piraee M, Zazopoulos E, Alarco AM, Gourdeau H, Mellon C, Farnet CM, Falardeau P, McAlpine JB: TLN-05220, TLN-05223, new Echinosporamicin-type antibiotics, and proposed revision of the structure of bravomicins(*). J Antibiot (Tokyo). 2009 Oct;62(10):565-70. doi: 10.1038/ja.2009.77. Epub 2009 Aug 14. [PubMed:19680283 ]