NP-MRD: Showing NP-Card for Dynemicin O (NP0008518)

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Record Information

Version

2.0

Created at

2020-12-09 06:05:17 UTC

Updated at

2021-07-15 17:00:39 UTC

NP-MRD ID

NP0008518

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Dynemicin O

Provided By

NPAtlas

Description

Dynemicin O is found in Micromonospora, Micromonospora chersina and Micromonospora chersina M956-1. Based on a literature review very few articles have been published on Dynemicin O.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242106103D          

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     RDKit          3D

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M  END


  Mrv1652306242106103D          

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 33  3  1  0  0  0  0
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 31  8  1  0  0  0  0
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M  END
> <DATABASE_ID>
NP0008518

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C([H])C2=C(N([H])[C@@]3([H])C4=C([H])C([H])=C([H])C(O[H])=C4[C@]4([H])[C@@]([H])(OC([H])([H])[H])C(=O)[C@]([H])(C([H])([H])[H])[C@@]3(O[H])[C@]24O[H])C2=C1C(=O)C1=C(O[H])C([H])=C([H])C(O[H])=C1C2=O

> <INCHI_IDENTIFIER>
InChI=1S/C29H23NO10/c1-9-23(35)26(40-2)21-16-10(4-3-5-12(16)31)27-28(9,38)29(21,39)11-8-15(34)19-20(22(11)30-27)25(37)18-14(33)7-6-13(32)17(18)24(19)36/h3-9,21,26-27,30-34,38-39H,1-2H3/t9-,21+,26+,27-,28-,29-/m0/s1

> <INCHI_KEY>
DXAZISIKQHCJNJ-ZCRFVMIVSA-N

> <FORMULA>
C29H23NO10

> <MOLECULAR_WEIGHT>
545.5

> <EXACT_MASS>
545.132195945

> <JCHEM_ACCEPTOR_COUNT>
11

> <JCHEM_ATOM_COUNT>
63

> <JCHEM_AVERAGE_POLARIZABILITY>
42.055153452354176

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,3R,4R,6R,7R,14S)-2,3,9,20,23,27-hexahydroxy-6-methoxy-4-methyl-15-azaheptacyclo[14.12.0.0^{2,7}.0^{3,14}.0^{8,13}.0^{17,26}.0^{19,24}]octacosa-1(28),8(13),9,11,16,19,21,23,26-nonaene-5,18,25-trione

> <ALOGPS_LOGP>
3.26

> <JCHEM_LOGP>
4.05331705

> <ALOGPS_LOGS>
-2.77

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
8.818708766607651

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.23519807645894

> <JCHEM_PKA_STRONGEST_BASIC>
0.7388358018125478

> <JCHEM_POLAR_SURFACE_AREA>
193.84999999999997

> <JCHEM_REFRACTIVITY>
140.26809999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
9.20e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3R,4R,6R,7R,14S)-2,3,9,20,23,27-hexahydroxy-6-methoxy-4-methyl-15-azaheptacyclo[14.12.0.0^{2,7}.0^{3,14}.0^{8,13}.0^{17,26}.0^{19,24}]octacosa-1(28),8(13),9,11,16,19,21,23,26-nonaene-5,18,25-trione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

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 33 59  1  6
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 38 62  1  0
 39 63  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -4.202  -3.354  -0.684  0.00  0.00           C+0
HETATM    2  O   UNK     0      -3.340  -2.646   0.146  0.00  0.00           O+0
HETATM    3  C   UNK     0      -3.579  -1.271   0.105  0.00  0.00           C+0
HETATM    4  C   UNK     0      -3.768  -0.748   1.464  0.00  0.00           C+0
HETATM    5  O   UNK     0      -4.795  -1.115   2.052  0.00  0.00           O+0
HETATM    6  C   UNK     0      -2.874   0.168   2.211  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.537   1.511   2.288  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.455   0.185   1.773  0.00  0.00           C+0
HETATM    9  O   UNK     0      -0.565  -0.145   2.804  0.00  0.00           O+0
HETATM   10  C   UNK     0      -0.974   1.432   1.139  0.00  0.00           C+0
HETATM   11  N   UNK     0       0.288   1.213   0.443  0.00  0.00           N+0
HETATM   12  C   UNK     0       0.902  -0.051   0.334  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.086  -1.201   0.422  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.576  -2.446   0.268  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.953  -2.585   0.014  0.00  0.00           C+0
HETATM   16  O   UNK     0       2.379  -3.880  -0.132  0.00  0.00           O+0
HETATM   17  C   UNK     0       2.777  -1.478  -0.074  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.246  -0.197   0.088  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.082   0.989   0.017  0.00  0.00           C+0
HETATM   20  O   UNK     0       2.645   2.134   0.161  0.00  0.00           O+0
HETATM   21  C   UNK     0       4.516   0.845  -0.235  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.349   1.938  -0.313  0.00  0.00           C+0
HETATM   23  O   UNK     0       4.923   3.220  -0.166  0.00  0.00           O+0
HETATM   24  C   UNK     0       6.745   1.779  -0.559  0.00  0.00           C+0
HETATM   25  C   UNK     0       7.233   0.518  -0.716  0.00  0.00           C+0
HETATM   26  C   UNK     0       6.403  -0.578  -0.638  0.00  0.00           C+0
HETATM   27  O   UNK     0       6.893  -1.875  -0.797  0.00  0.00           O+0
HETATM   28  C   UNK     0       5.059  -0.431  -0.401  0.00  0.00           C+0
HETATM   29  C   UNK     0       4.193  -1.622  -0.323  0.00  0.00           C+0
HETATM   30  O   UNK     0       4.709  -2.738  -0.475  0.00  0.00           O+0
HETATM   31  C   UNK     0      -1.313  -0.949   0.746  0.00  0.00           C+0
HETATM   32  O   UNK     0      -1.737  -2.096   1.483  0.00  0.00           O+0
HETATM   33  C   UNK     0      -2.239  -0.664  -0.387  0.00  0.00           C+0
HETATM   34  C   UNK     0      -2.456   0.764  -0.690  0.00  0.00           C+0
HETATM   35  C   UNK     0      -3.295   1.061  -1.750  0.00  0.00           C+0
HETATM   36  O   UNK     0      -3.898   0.077  -2.515  0.00  0.00           O+0
HETATM   37  C   UNK     0      -3.555   2.377  -2.076  0.00  0.00           C+0
HETATM   38  C   UNK     0      -2.999   3.423  -1.371  0.00  0.00           C+0
HETATM   39  C   UNK     0      -2.158   3.108  -0.309  0.00  0.00           C+0
HETATM   40  C   UNK     0      -1.909   1.811   0.002  0.00  0.00           C+0
HETATM   41  H   UNK     0      -5.231  -3.155  -0.340  0.00  0.00           H+0
HETATM   42  H   UNK     0      -4.009  -4.434  -0.484  0.00  0.00           H+0
HETATM   43  H   UNK     0      -4.037  -3.182  -1.748  0.00  0.00           H+0
HETATM   44  H   UNK     0      -4.398  -1.080  -0.580  0.00  0.00           H+0
HETATM   45  H   UNK     0      -2.871  -0.226   3.274  0.00  0.00           H+0
HETATM   46  H   UNK     0      -2.850   2.350   2.401  0.00  0.00           H+0
HETATM   47  H   UNK     0      -4.191   1.730   1.418  0.00  0.00           H+0
HETATM   48  H   UNK     0      -4.232   1.567   3.179  0.00  0.00           H+0
HETATM   49  H   UNK     0      -0.531   0.626   3.439  0.00  0.00           H+0
HETATM   50  H   UNK     0      -0.810   2.271   1.815  0.00  0.00           H+0
HETATM   51  H   UNK     0       0.688   2.054   0.005  0.00  0.00           H+0
HETATM   52  H   UNK     0      -0.063  -3.302   0.338  0.00  0.00           H+0
HETATM   53  H   UNK     0       3.265  -4.199  -0.309  0.00  0.00           H+0
HETATM   54  H   UNK     0       4.063   3.587   0.001  0.00  0.00           H+0
HETATM   55  H   UNK     0       7.381   2.654  -0.617  0.00  0.00           H+0
HETATM   56  H   UNK     0       8.302   0.345  -0.908  0.00  0.00           H+0
HETATM   57  H   UNK     0       7.861  -2.053  -0.972  0.00  0.00           H+0
HETATM   58  H   UNK     0      -1.101  -2.133   2.251  0.00  0.00           H+0
HETATM   59  H   UNK     0      -1.903  -1.176  -1.300  0.00  0.00           H+0
HETATM   60  H   UNK     0      -4.500   0.338  -3.277  0.00  0.00           H+0
HETATM   61  H   UNK     0      -4.222   2.612  -2.918  0.00  0.00           H+0
HETATM   62  H   UNK     0      -3.213   4.442  -1.638  0.00  0.00           H+0
HETATM   63  H   UNK     0      -1.705   3.886   0.265  0.00  0.00           H+0
CONECT    1    2   41   42   43                                             
CONECT    2    1    3                                                       
CONECT    3    2    4   33   44                                             
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7    8   45                                             
CONECT    7    6   46   47   48                                             
CONECT    8    6    9   10   31                                             
CONECT    9    8   49                                                       
CONECT   10    8   11   40   50                                             
CONECT   11   10   12   51                                                  
CONECT   12   11   13   18                                                  
CONECT   13   12   14   31                                                  
CONECT   14   13   15   52                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15   53                                                       
CONECT   17   15   18   29                                                  
CONECT   18   17   19   12                                                  
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   28                                                  
CONECT   22   21   23   24                                                  
CONECT   23   22   54                                                       
CONECT   24   22   25   55                                                  
CONECT   25   24   26   56                                                  
CONECT   26   25   27   28                                                  
CONECT   27   26   57                                                       
CONECT   28   26   29   21                                                  
CONECT   29   28   30   17                                                  
CONECT   30   29                                                            
CONECT   31   13   32   33    8                                             
CONECT   32   31   58                                                       
CONECT   33   31   34    3   59                                             
CONECT   34   33   35   40                                                  
CONECT   35   34   36   37                                                  
CONECT   36   35   60                                                       
CONECT   37   35   38   61                                                  
CONECT   38   37   39   62                                                  
CONECT   39   38   40   63                                                  
CONECT   40   39   34   10                                                  
CONECT   41    1                                                            
CONECT   42    1                                                            
CONECT   43    1                                                            
CONECT   44    3                                                            
CONECT   45    6                                                            
CONECT   46    7                                                            
CONECT   47    7                                                            
CONECT   48    7                                                            
CONECT   49    9                                                            
CONECT   50   10                                                            
CONECT   51   11                                                            
CONECT   52   14                                                            
CONECT   53   16                                                            
CONECT   54   23                                                            
CONECT   55   24                                                            
CONECT   56   25                                                            
CONECT   57   27                                                            
CONECT   58   32                                                            
CONECT   59   33                                                            
CONECT   60   36                                                            
CONECT   61   37                                                            
CONECT   62   38                                                            
CONECT   63   39                                                            
MASTER        0    0    0    0    0    0    0    0   63    0  138    0
END

RDKit          3D

63 69  0  0  0  0  0  0  0  0999 V2000
   -4.2016   -3.3542   -0.6841 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3399   -2.6458    0.1458 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5787   -1.2709    0.1053 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.7681   -0.7477    1.4637 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7945   -1.1151    2.0523 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8744    0.1682    2.2113 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.5369    1.5109    2.2879 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4546    0.1845    1.7731 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5651   -0.1447    2.8044 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9736    1.4319    1.1385 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2882    1.2133    0.4430 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.9019   -0.0508    0.3344 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0859   -1.2012    0.4221 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5763   -2.4465    0.2681 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9528   -2.5847    0.0140 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3791   -3.8803   -0.1323 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7774   -1.4782   -0.0743 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2462   -0.1968    0.0884 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0816    0.9886    0.0168 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6454    2.1336    0.1611 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5165    0.8446   -0.2350 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3489    1.9385   -0.3129 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9227    3.2204   -0.1660 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7445    1.7785   -0.5594 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2327    0.5175   -0.7156 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4034   -0.5784   -0.6384 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8926   -1.8753   -0.7969 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0591   -0.4309   -0.4013 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1926   -1.6221   -0.3230 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7093   -2.7379   -0.4752 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3133   -0.9488    0.7458 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7371   -2.0957    1.4827 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2388   -0.6636   -0.3874 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4564    0.7635   -0.6902 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2953    1.0612   -1.7503 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8976    0.0767   -2.5154 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5553    2.3766   -2.0763 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9993    3.4228   -1.3712 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1580    3.1076   -0.3092 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9094    1.8105    0.0019 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2315   -3.1554   -0.3396 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0094   -4.4342   -0.4841 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0366   -3.1815   -1.7480 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3983   -1.0801   -0.5798 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8711   -0.2260    3.2740 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8502    2.3503    2.4005 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1911    1.7297    1.4178 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2325    1.5669    3.1785 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5313    0.6255    3.4391 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8104    2.2705    1.8153 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6879    2.0535    0.0048 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0632   -3.3024    0.3375 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2652   -4.1986   -0.3089 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0625    3.5865    0.0013 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3812    2.6535   -0.6168 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3024    0.3445   -0.9075 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8609   -2.0529   -0.9718 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1006   -2.1331    2.2509 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9034   -1.1758   -1.2997 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5005    0.3384   -3.2772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2219    2.6123   -2.9184 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2127    4.4425   -1.6383 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7046    3.8858    0.2654 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  1  1
  8 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 15 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
 19 21  1  0
 21 22  2  0
 22 23  1  0
 22 24  1  0
 24 25  2  0
 25 26  1  0
 26 27  1  0
 26 28  2  0
 28 29  1  0
 29 30  2  0
 13 31  1  0
 31 32  1  1
 31 33  1  0
 33 34  1  0
 34 35  2  0
 35 36  1  0
 35 37  1  0
 37 38  2  0
 38 39  1  0
 39 40  2  0
 33  3  1  0
 40 34  1  0
 31  8  1  0
 40 10  1  0
 18 12  1  0
 28 21  1  0
 29 17  1  0
  1 41  1  0
  1 42  1  0
  1 43  1  0
  3 44  1  6
  6 45  1  1
  7 46  1  0
  7 47  1  0
  7 48  1  0
  9 49  1  0
 10 50  1  1
 11 51  1  0
 14 52  1  0
 16 53  1  0
 23 54  1  0
 24 55  1  0
 25 56  1  0
 27 57  1  0
 32 58  1  0
 33 59  1  6
 36 60  1  0
 37 61  1  0
 38 62  1  0
 39 63  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₉H₂₃NO₁₀

Average Mass

545.5000 Da

Monoisotopic Mass

545.13220 Da

IUPAC Name

(2R,3R,4R,6R,7R,14S)-2,3,9,20,23,27-hexahydroxy-6-methoxy-4-methyl-15-azaheptacyclo[14.12.0.0^{2,7}.0^{3,14}.0^{8,13}.0^{17,26}.0^{19,24}]octacosa-1(28),8(13),9,11,16,19,21,23,26-nonaene-5,18,25-trione

Traditional Name

CAS Registry Number

Not Available

SMILES

CO[C@@H]1[C@H]2C3=C(C=CC=C3O)[C@@H]3NC4=C5C(=O)C6=C(O)C=CC(O)=C6C(=O)C5=C(O)C=C4[C@@]2(O)[C@@]3(O)[C@@H](C)C1=O

InChI Identifier

InChI=1S/C29H23NO10/c1-9-23(35)26(40-2)21-16-10(4-3-5-12(16)31)27-28(9,38)29(21,39)11-8-15(34)19-20(22(11)30-27)25(37)18-14(33)7-6-13(32)17(18)24(19)36/h3-9,21,26-27,30-34,38-39H,1-2H3/t9-,21+,26+,27-,28-,29-/m0/s1

InChI Key

DXAZISIKQHCJNJ-ZCRFVMIVSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Micromonospora	NPAtlas	1955384
Micromonospora chersina	LOTUS Database	35616633
Micromonospora chersina M956-1	Bacteria	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.26	ALOGPS
logP	4.05	ChemAxon
logS	-2.8	ALOGPS
pKa (Strongest Acidic)	8.24	ChemAxon
pKa (Strongest Basic)	0.74	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	11	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	193.85 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	140.27 m³·mol⁻¹	ChemAxon
Polarizability	42.06 Å³	ChemAxon
Number of Rings	7	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA020649

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00017163

Chemspider ID

78442917

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139588912

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Dynemicin O (NP0008518)

MOL for NP0008518 (Dynemicin O)

3D MOL for NP0008518 (Dynemicin O)

3D SDF for NP0008518 (Dynemicin O)

3D-SDF for NP0008518 (Dynemicin O)

PDB for NP0008518 (Dynemicin O)

3D PDB for NP0008518 (Dynemicin O)

SMILES for NP0008518 (Dynemicin O)

INCHI for NP0008518 (Dynemicin O)

Structure for NP0008518 (Dynemicin O)

3D Structure for NP0008518 (Dynemicin O)