NP-MRD: Showing NP-Card for Cytochalasin Z10 (NP0008493)

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Record Information

Version

2.0

Created at

2020-12-09 06:04:09 UTC

Updated at

2021-07-15 17:00:34 UTC

NP-MRD ID

NP0008493

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Cytochalasin Z10

Provided By

NPAtlas

Description

Cytochalasin Z10 is found in Endothia and Spicaria elegans. Cytochalasin Z10 was first documented in 2009 (PMID: 19479839).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242106103D          

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M  END

     RDKit          3D

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M  END


  Mrv1652306242106103D          

 71 74  0  0  0  0            999 V2000
    1.6425   -2.7208    0.9086 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0575   -1.6785   -0.0140 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4941   -2.0380   -1.1587 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4267   -3.4723   -1.5624 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1022   -3.6442   -2.7712 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0718   -0.9388   -2.0011 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8889   -1.5204   -2.9617 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8944   -0.0789   -1.0500 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7872    0.7561   -1.8386 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0808    0.4424   -1.9197 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7285   -0.7013   -1.2737 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2939   -0.4049    0.0994 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.7679   -0.7676    0.0919 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0745    1.0570    0.4828 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.5137    1.0824    1.8993 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1176    2.4387    2.3628 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6644    0.7424    2.6786 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5662   -0.0074    2.1599 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3156    0.0919    1.7671 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7281    1.2120    1.0684 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3067    1.8286    1.8167 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0479    0.6357   -0.1485 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7695    1.7724   -0.7368 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3337    2.7191   -1.4371 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1451    1.6689   -0.3893 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.4327    0.2738   -0.2493 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6092   -0.0385    0.6445 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8630    0.5628    0.1670 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6788   -0.0952   -0.7151 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8407    0.5049   -1.1274 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2459    1.7587   -0.6975 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3847    2.3760    0.1914 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2105    1.8046    0.6273 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1373   -0.2604    0.3666 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8335   -3.4598    1.1244 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.0488   -4.0471   -0.8126 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2650   -4.6341   -2.8484 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6786   -0.3568   -2.5415 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.5627   -1.0250   -1.9706 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.8377   -1.0808    0.8698 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2742   -0.3784    1.0002 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2120   -0.3878   -0.8456 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8086   -1.8801    0.0443 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0975    1.5127    0.4861 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.8121    2.8749    3.1479 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1832    3.2255    1.5518 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1274    2.4753    2.8847 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1130    1.5364    3.0110 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8354   -0.9467    2.6835 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6375   -0.7571    1.9860 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3382    1.9959    0.6739 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1750    1.7089    2.7786 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8252    2.4827   -0.2611 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6486   -0.1551   -1.2284 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3998    0.1576    1.7168 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7496   -1.1569    0.5680 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4173   -1.0985   -1.0991 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4930   -0.0082   -1.8255 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1715    2.2146   -1.0382 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7042    3.3705    0.5335 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5889    2.3626    1.3350 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2310   -0.1340    1.4812 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  3  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  1  0  0  0
 15 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  6  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 26 34  1  0  0  0  0
 34  2  1  0  0  0  0
 22  8  1  0  0  0  0
 33 28  1  0  0  0  0
 34 22  1  0  0  0  0
  1 35  1  0  0  0  0
  1 36  1  0  0  0  0
  1 37  1  0  0  0  0
  4 38  1  0  0  0  0
  4 39  1  0  0  0  0
  5 40  1  0  0  0  0
  6 41  1  6  0  0  0
  7 42  1  0  0  0  0
  8 43  1  1  0  0  0
  9 44  1  0  0  0  0
 10 45  1  0  0  0  0
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 20 60  1  6  0  0  0
 21 61  1  0  0  0  0
 25 62  1  0  0  0  0
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 29 66  1  0  0  0  0
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 31 68  1  0  0  0  0
 32 69  1  0  0  0  0
 33 70  1  0  0  0  0
 34 71  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0008493

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC([H])([H])C1=C(C([H])([H])[H])[C@@]2([H])[C@@]([H])(N([H])C(=O)[C@@]22[C@@]([H])(\C([H])=C([H])/C([H])([H])[C@]([H])(C([H])([H])[H])C([H])([H])[C@@](O[H])(\C([H])=C([H])/[C@@]2([H])O[H])C([H])([H])[H])[C@]1([H])O[H])C([H])([H])C1=C([H])C([H])=C([H])C([H])=C1[H]

> <INCHI_IDENTIFIER>
InChI=1S/C28H37NO5/c1-17-8-7-11-21-25(32)20(16-30)18(2)24-22(14-19-9-5-4-6-10-19)29-26(33)28(21,24)23(31)12-13-27(3,34)15-17/h4-7,9-13,17,21-25,30-32,34H,8,14-16H2,1-3H3,(H,29,33)/b11-7-,13-12-/t17-,21-,22-,23+,24-,25+,27-,28+/m0/s1

> <INCHI_KEY>
RCKPMDAOJSMYQM-VZSBNOFNSA-N

> <FORMULA>
C28H37NO5

> <MOLECULAR_WEIGHT>
467.606

> <EXACT_MASS>
467.267173295

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
71

> <JCHEM_AVERAGE_POLARIZABILITY>
51.74158703153166

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3S,6S,6aR,10S,12R,15R,15aR,15bR)-3-benzyl-6,12,15-trihydroxy-5-(hydroxymethyl)-4,10,12-trimethyl-1H,2H,3H,6H,6aH,9H,10H,11H,12H,15H,15bH-cycloundeca[e]isoindol-1-one

> <ALOGPS_LOGP>
2.11

> <JCHEM_LOGP>
1.5471609470000005

> <ALOGPS_LOGS>
-3.55

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.124169335884048

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.645630322236372

> <JCHEM_PKA_STRONGEST_BASIC>
-0.4877978036248817

> <JCHEM_POLAR_SURFACE_AREA>
110.02000000000001

> <JCHEM_REFRACTIVITY>
134.38680000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.32e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3S,6S,6aR,10S,12R,15R,15aR,15bR)-3-benzyl-6,12,15-trihydroxy-5-(hydroxymethyl)-4,10,12-trimethyl-2H,3H,6H,6aH,9H,10H,11H,15H,15bH-cycloundeca[e]isoindol-1-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 71 74  0  0  0  0  0  0  0  0999 V2000
    1.6425   -2.7208    0.9086 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0575   -1.6785   -0.0140 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4941   -2.0380   -1.1587 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4267   -3.4723   -1.5624 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1022   -3.6442   -2.7712 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0718   -0.9388   -2.0011 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8889   -1.5204   -2.9617 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8944   -0.0789   -1.0500 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7872    0.7561   -1.8386 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0808    0.4424   -1.9197 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7285   -0.7013   -1.2737 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2939   -0.4049    0.0994 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.7679   -0.7676    0.0919 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0745    1.0570    0.4828 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5137    1.0824    1.8993 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1176    2.4387    2.3628 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6644    0.7424    2.6786 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5662   -0.0074    2.1599 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3156    0.0919    1.7671 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7281    1.2120    1.0684 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3067    1.8286    1.8167 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0479    0.6357   -0.1485 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7695    1.7724   -0.7368 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3337    2.7191   -1.4371 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1451    1.6689   -0.3893 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.4327    0.2738   -0.2493 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6092   -0.0385    0.6445 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8630    0.5628    0.1670 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6788   -0.0952   -0.7151 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8407    0.5049   -1.1274 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2459    1.7587   -0.6975 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3847    2.3760    0.1914 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2105    1.8046    0.6273 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1373   -0.2604    0.3666 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8335   -3.4598    1.1244 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4640   -3.2679    0.4315 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0148   -2.2439    1.8137 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5935   -3.8464   -1.5456 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0488   -4.0471   -0.8126 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2650   -4.6341   -2.8484 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6786   -0.3568   -2.5415 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3465   -2.3330   -2.6416 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4344   -0.8205   -0.4018 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4288    1.6181   -2.3625 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6952    1.1247   -2.5353 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5627   -1.0250   -1.9706 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1049   -1.6199   -1.1960 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8377   -1.0808    0.8698 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2742   -0.3784    1.0002 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2120   -0.3878   -0.8456 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8086   -1.8801    0.0443 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.5011    1.6165   -0.2479 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.1832    3.2255    1.5518 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.1130    1.5364    3.0110 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8354   -0.9467    2.6835 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6375   -0.7571    1.9860 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3382    1.9959    0.6739 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1750    1.7089    2.7786 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8252    2.4827   -0.2611 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6486   -0.1551   -1.2284 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3998    0.1576    1.7168 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7496   -1.1569    0.5680 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4173   -1.0985   -1.0991 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4930   -0.0082   -1.8255 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1715    2.2146   -1.0382 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7042    3.3705    0.5335 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5889    2.3626    1.3350 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2310   -0.1340    1.4812 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  3  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  1  0
 15 16  1  0
 15 17  1  1
 15 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  1  0
 20 22  1  0
 22 23  1  6
 23 24  2  0
 23 25  1  0
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 27 28  1  0
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 26 34  1  0
 34  2  1  0
 22  8  1  0
 33 28  1  0
 34 22  1  0
  1 35  1  0
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 29 66  1  0
 30 67  1  0
 31 68  1  0
 32 69  1  0
 33 70  1  0
 34 71  1  1
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       1.643  -2.721   0.909  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.058  -1.679  -0.014  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.494  -2.038  -1.159  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.427  -3.472  -1.562  0.00  0.00           C+0
HETATM    5  O   UNK     0       1.102  -3.644  -2.771  0.00  0.00           O+0
HETATM    6  C   UNK     0      -0.072  -0.939  -2.001  0.00  0.00           C+0
HETATM    7  O   UNK     0      -0.889  -1.520  -2.962  0.00  0.00           O+0
HETATM    8  C   UNK     0      -0.894  -0.079  -1.050  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.787   0.756  -1.839  0.00  0.00           C+0
HETATM   10  C   UNK     0      -3.081   0.442  -1.920  0.00  0.00           C+0
HETATM   11  C   UNK     0      -3.728  -0.701  -1.274  0.00  0.00           C+0
HETATM   12  C   UNK     0      -4.294  -0.405   0.099  0.00  0.00           C+0
HETATM   13  C   UNK     0      -5.768  -0.768   0.092  0.00  0.00           C+0
HETATM   14  C   UNK     0      -4.074   1.057   0.483  0.00  0.00           C+0
HETATM   15  C   UNK     0      -3.514   1.082   1.899  0.00  0.00           C+0
HETATM   16  C   UNK     0      -3.118   2.439   2.363  0.00  0.00           C+0
HETATM   17  O   UNK     0      -4.664   0.742   2.679  0.00  0.00           O+0
HETATM   18  C   UNK     0      -2.566  -0.007   2.160  0.00  0.00           C+0
HETATM   19  C   UNK     0      -1.316   0.092   1.767  0.00  0.00           C+0
HETATM   20  C   UNK     0      -0.728   1.212   1.068  0.00  0.00           C+0
HETATM   21  O   UNK     0       0.307   1.829   1.817  0.00  0.00           O+0
HETATM   22  C   UNK     0       0.048   0.636  -0.149  0.00  0.00           C+0
HETATM   23  C   UNK     0       0.770   1.772  -0.737  0.00  0.00           C+0
HETATM   24  O   UNK     0       0.334   2.719  -1.437  0.00  0.00           O+0
HETATM   25  N   UNK     0       2.145   1.669  -0.389  0.00  0.00           N+0
HETATM   26  C   UNK     0       2.433   0.274  -0.249  0.00  0.00           C+0
HETATM   27  C   UNK     0       3.609  -0.039   0.645  0.00  0.00           C+0
HETATM   28  C   UNK     0       4.863   0.563   0.167  0.00  0.00           C+0
HETATM   29  C   UNK     0       5.679  -0.095  -0.715  0.00  0.00           C+0
HETATM   30  C   UNK     0       6.841   0.505  -1.127  0.00  0.00           C+0
HETATM   31  C   UNK     0       7.246   1.759  -0.698  0.00  0.00           C+0
HETATM   32  C   UNK     0       6.385   2.376   0.191  0.00  0.00           C+0
HETATM   33  C   UNK     0       5.210   1.805   0.627  0.00  0.00           C+0
HETATM   34  C   UNK     0       1.137  -0.260   0.367  0.00  0.00           C+0
HETATM   35  H   UNK     0       0.834  -3.460   1.124  0.00  0.00           H+0
HETATM   36  H   UNK     0       2.464  -3.268   0.432  0.00  0.00           H+0
HETATM   37  H   UNK     0       2.015  -2.244   1.814  0.00  0.00           H+0
HETATM   38  H   UNK     0      -0.594  -3.846  -1.546  0.00  0.00           H+0
HETATM   39  H   UNK     0       1.049  -4.047  -0.813  0.00  0.00           H+0
HETATM   40  H   UNK     0       1.265  -4.634  -2.848  0.00  0.00           H+0
HETATM   41  H   UNK     0       0.679  -0.357  -2.542  0.00  0.00           H+0
HETATM   42  H   UNK     0      -1.347  -2.333  -2.642  0.00  0.00           H+0
HETATM   43  H   UNK     0      -1.434  -0.821  -0.402  0.00  0.00           H+0
HETATM   44  H   UNK     0      -1.429   1.618  -2.362  0.00  0.00           H+0
HETATM   45  H   UNK     0      -3.695   1.125  -2.535  0.00  0.00           H+0
HETATM   46  H   UNK     0      -4.563  -1.025  -1.971  0.00  0.00           H+0
HETATM   47  H   UNK     0      -3.105  -1.620  -1.196  0.00  0.00           H+0
HETATM   48  H   UNK     0      -3.838  -1.081   0.870  0.00  0.00           H+0
HETATM   49  H   UNK     0      -6.274  -0.378   1.000  0.00  0.00           H+0
HETATM   50  H   UNK     0      -6.212  -0.388  -0.846  0.00  0.00           H+0
HETATM   51  H   UNK     0      -5.809  -1.880   0.044  0.00  0.00           H+0
HETATM   52  H   UNK     0      -5.098   1.513   0.486  0.00  0.00           H+0
HETATM   53  H   UNK     0      -3.501   1.617  -0.248  0.00  0.00           H+0
HETATM   54  H   UNK     0      -3.812   2.875   3.148  0.00  0.00           H+0
HETATM   55  H   UNK     0      -3.183   3.225   1.552  0.00  0.00           H+0
HETATM   56  H   UNK     0      -2.127   2.475   2.885  0.00  0.00           H+0
HETATM   57  H   UNK     0      -5.113   1.536   3.011  0.00  0.00           H+0
HETATM   58  H   UNK     0      -2.835  -0.947   2.684  0.00  0.00           H+0
HETATM   59  H   UNK     0      -0.638  -0.757   1.986  0.00  0.00           H+0
HETATM   60  H   UNK     0      -1.338   1.996   0.674  0.00  0.00           H+0
HETATM   61  H   UNK     0       0.175   1.709   2.779  0.00  0.00           H+0
HETATM   62  H   UNK     0       2.825   2.483  -0.261  0.00  0.00           H+0
HETATM   63  H   UNK     0       2.649  -0.155  -1.228  0.00  0.00           H+0
HETATM   64  H   UNK     0       3.400   0.158   1.717  0.00  0.00           H+0
HETATM   65  H   UNK     0       3.750  -1.157   0.568  0.00  0.00           H+0
HETATM   66  H   UNK     0       5.417  -1.099  -1.099  0.00  0.00           H+0
HETATM   67  H   UNK     0       7.493  -0.008  -1.825  0.00  0.00           H+0
HETATM   68  H   UNK     0       8.172   2.215  -1.038  0.00  0.00           H+0
HETATM   69  H   UNK     0       6.704   3.370   0.534  0.00  0.00           H+0
HETATM   70  H   UNK     0       4.589   2.363   1.335  0.00  0.00           H+0
HETATM   71  H   UNK     0       1.231  -0.134   1.481  0.00  0.00           H+0
CONECT    1    2   35   36   37                                             
CONECT    2    1    3   34                                                  
CONECT    3    2    4    6                                                  
CONECT    4    3    5   38   39                                             
CONECT    5    4   40                                                       
CONECT    6    3    7    8   41                                             
CONECT    7    6   42                                                       
CONECT    8    6    9   22   43                                             
CONECT    9    8   10   44                                                  
CONECT   10    9   11   45                                                  
CONECT   11   10   12   46   47                                             
CONECT   12   11   13   14   48                                             
CONECT   13   12   49   50   51                                             
CONECT   14   12   15   52   53                                             
CONECT   15   14   16   17   18                                             
CONECT   16   15   54   55   56                                             
CONECT   17   15   57                                                       
CONECT   18   15   19   58                                                  
CONECT   19   18   20   59                                                  
CONECT   20   19   21   22   60                                             
CONECT   21   20   61                                                       
CONECT   22   20   23    8   34                                             
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   62                                                  
CONECT   26   25   27   34   63                                             
CONECT   27   26   28   64   65                                             
CONECT   28   27   29   33                                                  
CONECT   29   28   30   66                                                  
CONECT   30   29   31   67                                                  
CONECT   31   30   32   68                                                  
CONECT   32   31   33   69                                                  
CONECT   33   32   28   70                                                  
CONECT   34   26    2   22   71                                             
CONECT   35    1                                                            
CONECT   36    1                                                            
CONECT   37    1                                                            
CONECT   38    4                                                            
CONECT   39    4                                                            
CONECT   40    5                                                            
CONECT   41    6                                                            
CONECT   42    7                                                            
CONECT   43    8                                                            
CONECT   44    9                                                            
CONECT   45   10                                                            
CONECT   46   11                                                            
CONECT   47   11                                                            
CONECT   48   12                                                            
CONECT   49   13                                                            
CONECT   50   13                                                            
CONECT   51   13                                                            
CONECT   52   14                                                            
CONECT   53   14                                                            
CONECT   54   16                                                            
CONECT   55   16                                                            
CONECT   56   16                                                            
CONECT   57   17                                                            
CONECT   58   18                                                            
CONECT   59   19                                                            
CONECT   60   20                                                            
CONECT   61   21                                                            
CONECT   62   25                                                            
CONECT   63   26                                                            
CONECT   64   27                                                            
CONECT   65   27                                                            
CONECT   66   29                                                            
CONECT   67   30                                                            
CONECT   68   31                                                            
CONECT   69   32                                                            
CONECT   70   33                                                            
CONECT   71   34                                                            
MASTER        0    0    0    0    0    0    0    0   71    0  148    0
END

RDKit          3D

71 74  0  0  0  0  0  0  0  0999 V2000
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   -1.7872    0.7561   -1.8386 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.7679   -0.7676    0.0919 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0745    1.0570    0.4828 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.7281    1.2120    1.0684 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3067    1.8286    1.8167 O   0  0  0  0  0  0  0  0  0  0  0  0
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    7.2459    1.7587   -0.6975 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3847    2.3760    0.1914 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.8335   -3.4598    1.1244 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.5889    2.3626    1.3350 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2310   -0.1340    1.4812 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  3  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  0
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 22  8  1  0
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  1 35  1  0
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 34 71  1  1
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₈H₃₇NO₅

Average Mass

467.6060 Da

Monoisotopic Mass

467.26717 Da

IUPAC Name

(3S,6S,6aR,10S,12R,15R,15aR,15bR)-3-benzyl-6,12,15-trihydroxy-5-(hydroxymethyl)-4,10,12-trimethyl-1H,2H,3H,6H,6aH,9H,10H,11H,12H,15H,15bH-cycloundeca[e]isoindol-1-one

Traditional Name

(3S,6S,6aR,10S,12R,15R,15aR,15bR)-3-benzyl-6,12,15-trihydroxy-5-(hydroxymethyl)-4,10,12-trimethyl-2H,3H,6H,6aH,9H,10H,11H,15H,15bH-cycloundeca[e]isoindol-1-one

CAS Registry Number

Not Available

SMILES

C[C@H]1C\C=C/[C@H]2[C@H](O)C(CO)=C(C)[C@H]3[C@H](CC4=CC=CC=C4)NC(=O)[C@@]23[C@H](O)\C=C/[C@](C)(O)C1

InChI Identifier

InChI=1S/C28H37NO5/c1-17-8-7-11-21-25(32)20(16-30)18(2)24-22(14-19-9-5-4-6-10-19)29-26(33)28(21,24)23(31)12-13-27(3,34)15-17/h4-7,9-13,17,21-25,30-32,34H,8,14-16H2,1-3H3,(H,29,33)/b11-7-,13-12-/t17-,21-,22-,23+,24-,25+,27-,28+/m0/s1

InChI Key

RCKPMDAOJSMYQM-VZSBNOFNSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Endothia	NPAtlas	19479839
Mariannaea elegans	-	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.11	ALOGPS
logP	1.55	ChemAxon
logS	-3.6	ALOGPS
pKa (Strongest Acidic)	13.65	ChemAxon
pKa (Strongest Basic)	-0.49	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	110.02 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	134.39 m³·mol⁻¹	ChemAxon
Polarizability	51.74 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Xu S, Ge HM, Song YC, Shen Y, Ding H, Tan RX: Cytotoxic cytochalasin metabolites of endophytic Endothia gyrosa. Chem Biodivers. 2009 May;6(5):739-45. doi: 10.1002/cbdv.200800034. [PubMed:19479839 ]

Showing NP-Card for Cytochalasin Z10 (NP0008493)

MOL for NP0008493 (Cytochalasin Z10)

3D MOL for NP0008493 (Cytochalasin Z10)

3D SDF for NP0008493 (Cytochalasin Z10)

3D-SDF for NP0008493 (Cytochalasin Z10)

PDB for NP0008493 (Cytochalasin Z10)

3D PDB for NP0008493 (Cytochalasin Z10)

SMILES for NP0008493 (Cytochalasin Z10)

INCHI for NP0008493 (Cytochalasin Z10)

Structure for NP0008493 (Cytochalasin Z10)

3D Structure for NP0008493 (Cytochalasin Z10)