NP-MRD: Showing NP-Card for 4,10-dihydroxy-10-methyl-dodecan-4-olide (NP0008278)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

1.0

Created at

2020-12-09 05:54:37 UTC

Updated at

2021-07-15 16:59:57 UTC

NP-MRD ID

NP0008278

Secondary Accession Numbers

None

Natural Product Identification

Common Name

4,10-dihydroxy-10-methyl-dodecan-4-olide

Provided By

NPAtlas

Description

SCHEMBL14945360 belongs to the class of organic compounds known as gamma butyrolactones. Gamma butyrolactones are compounds containing a gamma butyrolactone moiety, which consists of an aliphatic five-member ring with four carbon atoms, one oxygen atom, and bears a ketone group on the carbon adjacent to the oxygen atom. 4,10-dihydroxy-10-methyl-dodecan-4-olide is found in Streptomyces sp. It was first documented in 2008 (PMID: 19194032). Based on a literature review very few articles have been published on SCHEMBL14945360.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242106083D          

 40 40  0  0  0  0            999 V2000
   -5.1090   -1.4442    0.2462 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7474   -1.0318   -0.2525 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5282    0.4511   -0.0606 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.5953    1.1904   -0.8398 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7143    0.7481    1.2847 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1580    0.8785   -0.5358 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0551    0.1707    0.2083 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2727    0.6687   -0.3400 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4379    0.0015    0.3601 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7061    0.5652   -0.2576 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.9429   -0.0329    0.3679 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.1403    0.5930   -0.3155 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.2324   -0.4240    0.0446 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.4542   -1.6875   -0.0276 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9561   -2.8365   -0.0856 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0956   -1.4069   -0.0213 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4443   -2.3235   -0.3478 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0981   -1.7672    1.3070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8681   -0.6470    0.1491 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0068   -1.6276    0.3338 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6694   -1.3286   -1.3186 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8478    0.6878   -1.7990 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4677    1.3550   -0.1875 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1772    2.1930   -1.1005 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3200    0.0810    1.6813 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0265    1.9695   -0.4104 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0970    0.6619   -1.6023 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1163   -0.9307    0.0447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0719    0.4018    1.2926 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2959    1.7620   -0.2013 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3207    0.4587   -1.4169 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4161    0.1420    1.4425 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4070   -1.0775    0.1075 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7476    0.3865   -1.3301 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7358    1.6542   -0.0507 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9743    0.0582    1.4570 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3761    1.5968    0.0571 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9853    0.5326   -1.3960 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5569   -0.2580    1.1086 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0643   -0.3845   -0.6591 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  1  0  0  0
  3  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 16 11  1  0  0  0  0
  1 17  1  0  0  0  0
  1 18  1  0  0  0  0
  1 19  1  0  0  0  0
  2 20  1  0  0  0  0
  2 21  1  0  0  0  0
  4 22  1  0  0  0  0
  4 23  1  0  0  0  0
  4 24  1  0  0  0  0
  5 25  1  0  0  0  0
  6 26  1  0  0  0  0
  6 27  1  0  0  0  0
  7 28  1  0  0  0  0
  7 29  1  0  0  0  0
  8 30  1  0  0  0  0
  8 31  1  0  0  0  0
  9 32  1  0  0  0  0
  9 33  1  0  0  0  0
 10 34  1  0  0  0  0
 10 35  1  0  0  0  0
 11 36  1  1  0  0  0
 12 37  1  0  0  0  0
 12 38  1  0  0  0  0
 13 39  1  0  0  0  0
 13 40  1  0  0  0  0
M  END

     RDKit          3D

 40 40  0  0  0  0  0  0  0  0999 V2000
   -5.1090   -1.4442    0.2462 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7474   -1.0318   -0.2525 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5282    0.4511   -0.0606 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.5953    1.1904   -0.8398 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7143    0.7481    1.2847 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1580    0.8785   -0.5358 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0551    0.1707    0.2083 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2727    0.6687   -0.3400 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4379    0.0015    0.3601 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7061    0.5652   -0.2576 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9429   -0.0329    0.3679 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.1403    0.5930   -0.3155 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2324   -0.4240    0.0446 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4542   -1.6875   -0.0276 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9561   -2.8365   -0.0856 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0956   -1.4069   -0.0213 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4443   -2.3235   -0.3478 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0981   -1.7672    1.3070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8681   -0.6470    0.1491 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0068   -1.6276    0.3338 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6694   -1.3286   -1.3186 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8478    0.6878   -1.7990 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4677    1.3550   -0.1875 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1772    2.1930   -1.1005 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3200    0.0810    1.6813 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0265    1.9695   -0.4104 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0970    0.6619   -1.6023 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1163   -0.9307    0.0447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0719    0.4018    1.2926 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2959    1.7620   -0.2013 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3207    0.4587   -1.4169 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4161    0.1420    1.4425 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4070   -1.0775    0.1075 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7476    0.3865   -1.3301 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7358    1.6542   -0.0507 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9743    0.0582    1.4570 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3761    1.5968    0.0571 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9853    0.5326   -1.3960 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5569   -0.2580    1.1086 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0643   -0.3845   -0.6591 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  1
  3  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 16 11  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  0
  2 21  1  0
  4 22  1  0
  4 23  1  0
  4 24  1  0
  5 25  1  0
  6 26  1  0
  6 27  1  0
  7 28  1  0
  7 29  1  0
  8 30  1  0
  8 31  1  0
  9 32  1  0
  9 33  1  0
 10 34  1  0
 10 35  1  0
 11 36  1  1
 12 37  1  0
 12 38  1  0
 13 39  1  0
 13 40  1  0
M  END


  Mrv1652306242106083D          

 40 40  0  0  0  0            999 V2000
   -5.1090   -1.4442    0.2462 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7474   -1.0318   -0.2525 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5282    0.4511   -0.0606 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.5953    1.1904   -0.8398 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7143    0.7481    1.2847 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1580    0.8785   -0.5358 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0551    0.1707    0.2083 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2727    0.6687   -0.3400 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4379    0.0015    0.3601 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7061    0.5652   -0.2576 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.9429   -0.0329    0.3679 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.1403    0.5930   -0.3155 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.2324   -0.4240    0.0446 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.4542   -1.6875   -0.0276 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9561   -2.8365   -0.0856 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0956   -1.4069   -0.0213 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4443   -2.3235   -0.3478 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0981   -1.7672    1.3070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8681   -0.6470    0.1491 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0068   -1.6276    0.3338 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6694   -1.3286   -1.3186 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8478    0.6878   -1.7990 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4677    1.3550   -0.1875 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1772    2.1930   -1.1005 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3200    0.0810    1.6813 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0265    1.9695   -0.4104 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0970    0.6619   -1.6023 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1163   -0.9307    0.0447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0719    0.4018    1.2926 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2959    1.7620   -0.2013 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3207    0.4587   -1.4169 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4161    0.1420    1.4425 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4070   -1.0775    0.1075 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7476    0.3865   -1.3301 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7358    1.6542   -0.0507 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9743    0.0582    1.4570 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3761    1.5968    0.0571 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9853    0.5326   -1.3960 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5569   -0.2580    1.1086 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0643   -0.3845   -0.6591 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  1  0  0  0
  3  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 16 11  1  0  0  0  0
  1 17  1  0  0  0  0
  1 18  1  0  0  0  0
  1 19  1  0  0  0  0
  2 20  1  0  0  0  0
  2 21  1  0  0  0  0
  4 22  1  0  0  0  0
  4 23  1  0  0  0  0
  4 24  1  0  0  0  0
  5 25  1  0  0  0  0
  6 26  1  0  0  0  0
  6 27  1  0  0  0  0
  7 28  1  0  0  0  0
  7 29  1  0  0  0  0
  8 30  1  0  0  0  0
  8 31  1  0  0  0  0
  9 32  1  0  0  0  0
  9 33  1  0  0  0  0
 10 34  1  0  0  0  0
 10 35  1  0  0  0  0
 11 36  1  1  0  0  0
 12 37  1  0  0  0  0
 12 38  1  0  0  0  0
 13 39  1  0  0  0  0
 13 40  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0008278

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@](C([H])([H])[H])(C([H])([H])C([H])([H])[H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[C@@]1([H])OC(=O)C([H])([H])C1([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C13H24O3/c1-3-13(2,15)10-6-4-5-7-11-8-9-12(14)16-11/h11,15H,3-10H2,1-2H3/t11-,13-/m1/s1

> <INCHI_KEY>
RUBODPIDZMQESI-UHFFFAOYSA-N

> <FORMULA>
C13H24O3

> <MOLECULAR_WEIGHT>
228.332

> <EXACT_MASS>
228.172544633

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
27.387130509110534

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(5R)-5-[(6R)-6-hydroxy-6-methyloctyl]oxolan-2-one

> <ALOGPS_LOGP>
3.40

> <JCHEM_LOGP>
2.649918856666666

> <ALOGPS_LOGS>
-3.02

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
19.094188761121373

> <JCHEM_PKA_STRONGEST_BASIC>
-1.0080014348031865

> <JCHEM_POLAR_SURFACE_AREA>
46.53

> <JCHEM_REFRACTIVITY>
63.16460000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.16e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(5R)-5-[(6R)-6-hydroxy-6-methyloctyl]oxolan-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 40 40  0  0  0  0  0  0  0  0999 V2000
   -5.1090   -1.4442    0.2462 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7474   -1.0318   -0.2525 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5282    0.4511   -0.0606 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.5953    1.1904   -0.8398 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7143    0.7481    1.2847 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1580    0.8785   -0.5358 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0551    0.1707    0.2083 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2727    0.6687   -0.3400 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4379    0.0015    0.3601 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7061    0.5652   -0.2576 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9429   -0.0329    0.3679 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.1403    0.5930   -0.3155 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2324   -0.4240    0.0446 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4542   -1.6875   -0.0276 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9561   -2.8365   -0.0856 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0956   -1.4069   -0.0213 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4443   -2.3235   -0.3478 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0981   -1.7672    1.3070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8681   -0.6470    0.1491 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0068   -1.6276    0.3338 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6694   -1.3286   -1.3186 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8478    0.6878   -1.7990 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4677    1.3550   -0.1875 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1772    2.1930   -1.1005 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3200    0.0810    1.6813 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0265    1.9695   -0.4104 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0970    0.6619   -1.6023 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1163   -0.9307    0.0447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0719    0.4018    1.2926 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2959    1.7620   -0.2013 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3207    0.4587   -1.4169 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4161    0.1420    1.4425 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4070   -1.0775    0.1075 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7476    0.3865   -1.3301 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7358    1.6542   -0.0507 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9743    0.0582    1.4570 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3761    1.5968    0.0571 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9853    0.5326   -1.3960 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5569   -0.2580    1.1086 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0643   -0.3845   -0.6591 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  1
  3  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 16 11  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  0
  2 21  1  0
  4 22  1  0
  4 23  1  0
  4 24  1  0
  5 25  1  0
  6 26  1  0
  6 27  1  0
  7 28  1  0
  7 29  1  0
  8 30  1  0
  8 31  1  0
  9 32  1  0
  9 33  1  0
 10 34  1  0
 10 35  1  0
 11 36  1  1
 12 37  1  0
 12 38  1  0
 13 39  1  0
 13 40  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -5.109  -1.444   0.246  0.00  0.00           C+0
HETATM    2  C   UNK     0      -3.747  -1.032  -0.253  0.00  0.00           C+0
HETATM    3  C   UNK     0      -3.528   0.451  -0.061  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.595   1.190  -0.840  0.00  0.00           C+0
HETATM    5  O   UNK     0      -3.714   0.748   1.285  0.00  0.00           O+0
HETATM    6  C   UNK     0      -2.158   0.879  -0.536  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.055   0.171   0.208  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.273   0.669  -0.340  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.438   0.002   0.360  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.706   0.565  -0.258  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.943  -0.033   0.368  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.140   0.593  -0.316  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.232  -0.424   0.045  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.454  -1.688  -0.028  0.00  0.00           C+0
HETATM   15  O   UNK     0       5.956  -2.837  -0.086  0.00  0.00           O+0
HETATM   16  O   UNK     0       4.096  -1.407  -0.021  0.00  0.00           O+0
HETATM   17  H   UNK     0      -5.444  -2.324  -0.348  0.00  0.00           H+0
HETATM   18  H   UNK     0      -5.098  -1.767   1.307  0.00  0.00           H+0
HETATM   19  H   UNK     0      -5.868  -0.647   0.149  0.00  0.00           H+0
HETATM   20  H   UNK     0      -3.007  -1.628   0.334  0.00  0.00           H+0
HETATM   21  H   UNK     0      -3.669  -1.329  -1.319  0.00  0.00           H+0
HETATM   22  H   UNK     0      -4.848   0.688  -1.799  0.00  0.00           H+0
HETATM   23  H   UNK     0      -5.468   1.355  -0.188  0.00  0.00           H+0
HETATM   24  H   UNK     0      -4.177   2.193  -1.101  0.00  0.00           H+0
HETATM   25  H   UNK     0      -4.320   0.081   1.681  0.00  0.00           H+0
HETATM   26  H   UNK     0      -2.026   1.970  -0.410  0.00  0.00           H+0
HETATM   27  H   UNK     0      -2.097   0.662  -1.602  0.00  0.00           H+0
HETATM   28  H   UNK     0      -1.116  -0.931   0.045  0.00  0.00           H+0
HETATM   29  H   UNK     0      -1.072   0.402   1.293  0.00  0.00           H+0
HETATM   30  H   UNK     0       0.296   1.762  -0.201  0.00  0.00           H+0
HETATM   31  H   UNK     0       0.321   0.459  -1.417  0.00  0.00           H+0
HETATM   32  H   UNK     0       1.416   0.142   1.442  0.00  0.00           H+0
HETATM   33  H   UNK     0       1.407  -1.077   0.108  0.00  0.00           H+0
HETATM   34  H   UNK     0       2.748   0.387  -1.330  0.00  0.00           H+0
HETATM   35  H   UNK     0       2.736   1.654  -0.051  0.00  0.00           H+0
HETATM   36  H   UNK     0       3.974   0.058   1.457  0.00  0.00           H+0
HETATM   37  H   UNK     0       5.376   1.597   0.057  0.00  0.00           H+0
HETATM   38  H   UNK     0       4.985   0.533  -1.396  0.00  0.00           H+0
HETATM   39  H   UNK     0       6.557  -0.258   1.109  0.00  0.00           H+0
HETATM   40  H   UNK     0       7.064  -0.385  -0.659  0.00  0.00           H+0
CONECT    1    2   17   18   19                                             
CONECT    2    1    3   20   21                                             
CONECT    3    2    4    5    6                                             
CONECT    4    3   22   23   24                                             
CONECT    5    3   25                                                       
CONECT    6    3    7   26   27                                             
CONECT    7    6    8   28   29                                             
CONECT    8    7    9   30   31                                             
CONECT    9    8   10   32   33                                             
CONECT   10    9   11   34   35                                             
CONECT   11   10   12   16   36                                             
CONECT   12   11   13   37   38                                             
CONECT   13   12   14   39   40                                             
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   11                                                       
CONECT   17    1                                                            
CONECT   18    1                                                            
CONECT   19    1                                                            
CONECT   20    2                                                            
CONECT   21    2                                                            
CONECT   22    4                                                            
CONECT   23    4                                                            
CONECT   24    4                                                            
CONECT   25    5                                                            
CONECT   26    6                                                            
CONECT   27    6                                                            
CONECT   28    7                                                            
CONECT   29    7                                                            
CONECT   30    8                                                            
CONECT   31    8                                                            
CONECT   32    9                                                            
CONECT   33    9                                                            
CONECT   34   10                                                            
CONECT   35   10                                                            
CONECT   36   11                                                            
CONECT   37   12                                                            
CONECT   38   12                                                            
CONECT   39   13                                                            
CONECT   40   13                                                            
MASTER        0    0    0    0    0    0    0    0   40    0   80    0
END

RDKit          3D

40 40  0  0  0  0  0  0  0  0999 V2000
   -5.1090   -1.4442    0.2462 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7474   -1.0318   -0.2525 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5282    0.4511   -0.0606 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.5953    1.1904   -0.8398 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7143    0.7481    1.2847 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1580    0.8785   -0.5358 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0551    0.1707    0.2083 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2727    0.6687   -0.3400 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4379    0.0015    0.3601 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7061    0.5652   -0.2576 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9429   -0.0329    0.3679 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.1403    0.5930   -0.3155 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2324   -0.4240    0.0446 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4542   -1.6875   -0.0276 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9561   -2.8365   -0.0856 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0956   -1.4069   -0.0213 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4443   -2.3235   -0.3478 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0981   -1.7672    1.3070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8681   -0.6470    0.1491 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0068   -1.6276    0.3338 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6694   -1.3286   -1.3186 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8478    0.6878   -1.7990 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4677    1.3550   -0.1875 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1772    2.1930   -1.1005 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3200    0.0810    1.6813 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0265    1.9695   -0.4104 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0970    0.6619   -1.6023 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1163   -0.9307    0.0447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0719    0.4018    1.2926 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2959    1.7620   -0.2013 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3207    0.4587   -1.4169 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4161    0.1420    1.4425 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4070   -1.0775    0.1075 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7476    0.3865   -1.3301 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7358    1.6542   -0.0507 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9743    0.0582    1.4570 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3761    1.5968    0.0571 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9853    0.5326   -1.3960 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5569   -0.2580    1.1086 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0643   -0.3845   -0.6591 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  1
  3  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 16 11  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  0
  2 21  1  0
  4 22  1  0
  4 23  1  0
  4 24  1  0
  5 25  1  0
  6 26  1  0
  6 27  1  0
  7 28  1  0
  7 29  1  0
  8 30  1  0
  8 31  1  0
  9 32  1  0
  9 33  1  0
 10 34  1  0
 10 35  1  0
 11 36  1  1
 12 37  1  0
 12 38  1  0
 13 39  1  0
 13 40  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₁₃H₂₄O₃

Average Mass

228.3320 Da

Monoisotopic Mass

228.17254 Da

IUPAC Name

(5R)-5-[(6R)-6-hydroxy-6-methyloctyl]oxolan-2-one

Traditional Name

(5R)-5-[(6R)-6-hydroxy-6-methyloctyl]oxolan-2-one

CAS Registry Number

Not Available

SMILES

CCC(C)(O)CCCCCC1CCC(=O)O1

InChI Identifier

InChI=1S/C13H24O3/c1-3-13(2,15)10-6-4-5-7-11-8-9-12(14)16-11/h11,15H,3-10H2,1-2H3

InChI Key

RUBODPIDZMQESI-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces sp.	NPAtlas	19194032

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as gamma butyrolactones. Gamma butyrolactones are compounds containing a gamma butyrolactone moiety, which consists of an aliphatic five-member ring with four carbon atoms, one oxygen atom, and bears a ketone group on the carbon adjacent to the oxygen atom.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Lactones

Sub Class

Gamma butyrolactones

Direct Parent

Gamma butyrolactones

Alternative Parents

Substituents

Gamma butyrolactone
Tertiary alcohol
Oxolane
Carboxylic acid ester
Oxacycle
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.4	ALOGPS
logP	2.65	ChemAxon
logS	-3	ALOGPS
pKa (Strongest Acidic)	19.09	ChemAxon
pKa (Strongest Basic)	-1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	46.53 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	63.16 m³·mol⁻¹	ChemAxon
Polarizability	27.39 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA001173

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

27024219

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

25198820

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Shaaban KA, Shaaban M, Facey P, Fotso S, Frauendorf H, Helmke E, Maier A, Fiebig HH, Laatsch H: Electrospray ionization mass spectra of piperazimycins A and B and gamma-butyrolactones from a marine-derived Streptomyces sp. J Antibiot (Tokyo). 2008 Dec;61(12):736-46. doi: 10.1038/ja.2008.87. [PubMed:19194032 ]

Showing NP-Card for 4,10-dihydroxy-10-methyl-dodecan-4-olide (NP0008278)

MOL for NP0008278 (4,10-dihydroxy-10-methyl-dodecan-4-olide)

3D MOL for NP0008278 (4,10-dihydroxy-10-methyl-dodecan-4-olide)

3D SDF for NP0008278 (4,10-dihydroxy-10-methyl-dodecan-4-olide)

3D-SDF for NP0008278 (4,10-dihydroxy-10-methyl-dodecan-4-olide)

PDB for NP0008278 (4,10-dihydroxy-10-methyl-dodecan-4-olide)

3D PDB for NP0008278 (4,10-dihydroxy-10-methyl-dodecan-4-olide)

SMILES for NP0008278 (4,10-dihydroxy-10-methyl-dodecan-4-olide)

INCHI for NP0008278 (4,10-dihydroxy-10-methyl-dodecan-4-olide)

Structure for NP0008278 (4,10-dihydroxy-10-methyl-dodecan-4-olide)

3D Structure for NP0008278 (4,10-dihydroxy-10-methyl-dodecan-4-olide)