Np mrd loader

Record Information
Version1.0
Created at2020-12-09 05:53:27 UTC
Updated at2021-07-15 16:59:52 UTC
NP-MRD IDNP0008250
Secondary Accession NumbersNone
Natural Product Identification
Common NameMM 55268
Provided ByNPAtlasNPAtlas Logo
Description MM 55268 is found in Amycolatopsis and Amycolatopsis sp. NCIB 40089. It was first documented in 1991 (PMID: 1917694). Based on a literature review very few articles have been published on (1S,2S,18R,19R,22R,34R,37R,40S)-2-{[(2R,3R,4R,5S,6S)-6-carboxy-4,5-dihydroxy-3-[(1-hydroxydecylidene)amino]oxan-2-yl]oxy}-5,15,32,43,65-pentachloro-18,21,26,31,35,38,47,49,54,56,59-undecahydroxy-22-(methylamino)-44,64-bis({[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-7,13,28-trioxa-20,36,39,53,55,58-hexaazaundecacyclo[38.14.2.2³,⁶.2¹⁴,¹⁷.2¹⁹,³⁴.1⁸,¹².1²³,²⁷.1²⁹,³³.1⁴¹,⁴⁵.0¹⁰,³⁷.0⁴⁶,⁵¹]Hexahexaconta-3,5,8,10,12(64),14,16,20,23(61),24,26,29(60),30,32,35,38,41(57),42,44,46(51),47,49,53,55,58,62,65-heptacosaene-52-carboxylic acid.
Structure
Thumb
Synonyms
ValueSource
(1S,2S,18R,19R,22R,34R,37R,40S)-2-{[(2R,3R,4R,5S,6S)-6-carboxy-4,5-dihydroxy-3-[(1-hydroxydecylidene)amino]oxan-2-yl]oxy}-5,15,32,43,65-pentachloro-18,21,26,31,35,38,47,49,54,56,59-undecahydroxy-22-(methylamino)-44,64-bis({[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-7,13,28-trioxa-20,36,39,53,55,58-hexaazaundecacyclo[38.14.2.2,.2,.2,.1,.1,.1,.1,.0,.0,]hexahexaconta-3,5,8,10,12(64),14,16,20,23(61),24,26,29(60),30,32,35,38,41(57),42,44,46(51),47,49,53,55,58,62,65-heptacosaene-52-carboxylateGenerator
Chemical FormulaC87H91Cl5N8O35
Average Mass1985.9600 Da
Monoisotopic Mass1982.40295 Da
IUPAC Name(1S,2S,18R,19R,22R,34R,37R,40S,52R)-2-{[(2R,3R,4R,5S,6S)-6-carboxy-3-decanamido-4,5-dihydroxyoxan-2-yl]oxy}-5,32,43,63,65-pentachloro-18,26,31,47,49-pentahydroxy-22-(methylamino)-21,35,38,54,56,59-hexaoxo-44,64-bis({[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-7,13,28-trioxa-20,36,39,53,55,58-hexaazaundecacyclo[38.14.2.2^{3,6}.2^{14,17}.2^{19,34}.1^{8,12}.1^{23,27}.1^{29,33}.1^{41,45}.0^{10,37}.0^{46,51}]hexahexaconta-3,5,8,10,12(64),14,16,23,25,27(61),29,31,33(60),41,43,45(57),46,48,50,62,65-henicosaene-52-carboxylic acid
Traditional Name(1S,2S,18R,19R,22R,34R,37R,40S,52R)-2-{[(2R,3R,4R,5S,6S)-6-carboxy-3-decanamido-4,5-dihydroxyoxan-2-yl]oxy}-5,32,43,63,65-pentachloro-18,26,31,47,49-pentahydroxy-22-(methylamino)-21,35,38,54,56,59-hexaoxo-44,64-bis({[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-7,13,28-trioxa-20,36,39,53,55,58-hexaazaundecacyclo[38.14.2.2^{3,6}.2^{14,17}.2^{19,34}.1^{8,12}.1^{23,27}.1^{29,33}.1^{41,45}.0^{10,37}.0^{46,51}]hexahexaconta-3,5,8,10,12(64),14,16,23,25,27(61),29,31,33(60),41,43,45(57),46,48,50,62,65-henicosaene-52-carboxylic acid
CAS Registry NumberNot Available
SMILES
CCCCCCCCCC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@H](O[C@H]1O[C@@H]1[C@@H]2NC(=O)[C@@H](NC(=O)[C@@H]3NC(=O)[C@@H]4NC(=O)[C@H](NC(=O)[C@H](NC)C5=CC(OC6=CC(O)=C(Cl)C4=C6)=C(O)C=C5)[C@H](O)C4=CC(Cl)=C(OC5=C(O[C@@H]6O[C@@H](CO)[C@H](O)[C@@H](O)[C@H]6O)C(OC6=C(Cl)C=C1C=C6Cl)=CC3=C5)C=C4)C1=CC(Cl)=C(O[C@@H]3O[C@@H](CO)[C@H](O)[C@@H](O)[C@H]3O)C(=C1)C1=C(O)C=C(O)C=C1C(NC2=O)C(O)=O)C(O)=O
InChI Identifier
InChI=1S/C87H91Cl5N8O35/c1-3-4-5-6-7-8-9-10-52(107)94-61-66(111)69(114)76(84(125)126)135-85(61)132-72-33-18-41(90)74(42(91)19-33)129-49-22-32-21-48(75(49)134-87-71(116)68(113)65(110)51(28-102)131-87)128-46-14-12-30(16-39(46)88)63(108)60-81(121)97-58(38-25-35(26-45(106)54(38)92)127-47-20-29(11-13-43(47)104)55(93-2)77(117)99-60)80(120)96-57(32)78(118)95-56-31-15-37(73(40(89)17-31)133-86-70(115)67(112)64(109)50(27-101)130-86)53-36(23-34(103)24-44(53)105)59(83(123)124)98-82(122)62(72)100-79(56)119/h11-26,50-51,55-72,76,85-87,93,101-106,108-116H,3-10,27-28H2,1-2H3,(H,94,107)(H,95,118)(H,96,120)(H,97,121)(H,98,122)(H,99,117)(H,100,119)(H,123,124)(H,125,126)/t50-,51-,55+,56-,57+,58+,59?,60+,61+,62-,63+,64-,65-,66+,67+,68+,69-,70+,71+,72-,76-,85+,86-,87-/m0/s1
InChI KeyYMMGERHTUDYWJN-DXDAXJJZSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
AmycolatopsisNPAtlas
Amycolatopsis sp. NCIB 40089Bacteria
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.45ALOGPS
logP-0.79ChemAxon
logS-4ALOGPS
pKa (Strongest Acidic)2.82ChemAxon
pKa (Strongest Basic)7.59ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count33ChemAxon
Hydrogen Donor Count25ChemAxon
Polar Surface Area676.85 ŲChemAxon
Rotatable Bond Count20ChemAxon
Refractivity460.07 m³·mol⁻¹ChemAxon
Polarizability191.51 ųChemAxon
Number of Rings14ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA020656
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78442920
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139588915
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Box SJ, Coates NJ, Davis CJ, Gilpin ML, Houge-Frydrych CS, Milner PH: MM 55266 and MM 55268, glycopeptide antibiotics produced by a new strain of Amycolatopsis. Isolation, purification and structure determination. J Antibiot (Tokyo). 1991 Aug;44(8):807-13. doi: 10.7164/antibiotics.44.807. [PubMed:1917694 ]