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Record Information
Version1.0
Created at2020-12-09 05:41:16 UTC
Updated at2021-07-15 16:59:19 UTC
NP-MRD IDNP0008060
Secondary Accession NumbersNone
Natural Product Identification
Common NameStreptomycin
Provided ByNPAtlasNPAtlas Logo
DescriptionStreptomycin, also known as kantrex or SM, belongs to the class of organic compounds known as diphenylacetonitriles. These are cyclic aromatic compounds containing a diphenylacetonitrile moiety, which consists of a diphenylmethane linked to and acetonitrile to form 2,2-diphenylacetonitrile. Streptomycin exists in all living organisms, ranging from bacteria to humans. In humans, streptomycin is involved in the streptomycin action pathway. Streptomycin is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. Streptomycin is found in Streptomyces albidoflavus, Streptomyces avermitilis, Streptomyces bikiniensis, Streptomyces coelicolor, Streptomyces galbus, Streptomyces glaucescens, Streptomyces griseus, Streptomyces humidus, Streptomyces hygroscopicus and Streptomyces sioyaensis. It was first documented in 1948 (PMID: 18875100). Based on a literature review a significant number of articles have been published on Streptomycin (PMID: 11228320) (PMID: 11905029) (PMID: 12118520) (PMID: 13030054).
Structure
Thumb
Synonyms
ValueSource
2,4-Diguanidino-3,5,6-trihydroxycyclohexyl 5-deoxy-2-O-(2-deoxy-2-methylamino-alpha-L-glucopyranosyl)-3-C-formyl-beta-L-lyxopentanofuranosideChEBI
[2-Deoxy-2-(dimethylamino)-alpha-L-glucopyranosyl]-(1->2)-[5-deoxy-3-C-formyl-alpha-L-lyxofuranosyl]-(1->4)-{n',n'''-[(1,3,5/2,4,6)-2,4,5,6-tetrahydroxycyclohexane-1,3-diyl]diguanidine}ChEBI
KantrexChEBI
SMChEBI
StreomycinChEBI
2,4-Diguanidino-3,5,6-trihydroxycyclohexyl 5-deoxy-2-O-(2-deoxy-2-methylamino-a-L-glucopyranosyl)-3-C-formyl-b-L-lyxopentanofuranosideGenerator
2,4-Diguanidino-3,5,6-trihydroxycyclohexyl 5-deoxy-2-O-(2-deoxy-2-methylamino-α-L-glucopyranosyl)-3-C-formyl-β-L-lyxopentanofuranosideGenerator
[2-Deoxy-2-(dimethylamino)-a-L-glucopyranosyl]-(1->2)-[5-deoxy-3-C-formyl-a-L-lyxofuranosyl]-(1->4)-{n',n'''-[(1,3,5/2,4,6)-2,4,5,6-tetrahydroxycyclohexane-1,3-diyl]diguanidine}Generator
[2-Deoxy-2-(dimethylamino)-α-L-glucopyranosyl]-(1->2)-[5-deoxy-3-C-formyl-α-L-lyxofuranosyl]-(1->4)-{n',n'''-[(1,3,5/2,4,6)-2,4,5,6-tetrahydroxycyclohexane-1,3-diyl]diguanidine}Generator
Streptomycin a sulfateHMDB
Streptomycin sesquisulfate hydrateHMDB
Streptomycin sesquisulphate hydrateHMDB
Streptomycin sulfateHMDB
Streptomycin sulphateHMDB
Streptomycin, sulfate saltHMDB
Normon brand OF streptomycin sulfateHMDB
Sanavita brand OF streptomycin sulfateHMDB
Strepto hefaHMDB
Strepto-fatolHMDB
Streptomycin grünenthalHMDB
Wernigerode brand OF streptomycin sulfateHMDB
Clariana brand OF streptomycin sulfateHMDB
Estreptomicina cepaHMDB
Fatol brand OF streptomycin sulfateHMDB
Strepto fatolHMDB
Strepto-hefaHMDB
CEPA brand OF streptomycin sulfateHMDB
Estreptomicina normonHMDB
Grünenthal brand OF streptomycin sulfateHMDB
Panpharma brand OF streptomycin sulfateHMDB
Estreptomicina clarianaHMDB
Streptomycin sulfate (2:3) saltHMDB
Streptomycine panpharmaHMDB
Chemical FormulaC21H39N7O12
Average Mass581.5741 Da
Monoisotopic Mass581.26567 Da
IUPAC NameN''-[(1S,2R,3R,4S,5R,6R)-3-[(diaminomethylidene)amino]-6-{[(2R,3R,4R,5S)-3-{[(2S,3S,4S,5R,6S)-4,5-dihydroxy-6-(hydroxymethyl)-3-(methylamino)oxan-2-yl]oxy}-4-formyl-4-hydroxy-5-methyloxolan-2-yl]oxy}-2,4,5-trihydroxycyclohexyl]guanidine
Traditional NameN''-[(1S,2R,3R,4S,5R,6R)-3-[(diaminomethylidene)amino]-6-{[(2R,3R,4R,5S)-3-{[(2S,3S,4S,5R,6S)-4,5-dihydroxy-6-(hydroxymethyl)-3-(methylamino)oxan-2-yl]oxy}-4-formyl-4-hydroxy-5-methyloxolan-2-yl]oxy}-2,4,5-trihydroxycyclohexyl]guanidine
CAS Registry NumberNot Available
SMILES
CN[C@H]1[C@H](O)[C@@H](O)[C@H](CO)O[C@H]1O[C@H]1[C@H](O[C@H]2[C@H](O)[C@@H](O)[C@H](N=C(N)N)[C@@H](O)[C@@H]2N=C(N)N)O[C@@H](C)[C@]1(O)C=O
InChI Identifier
InChI=1S/C21H39N7O12/c1-5-21(36,4-30)16(40-17-9(26-2)13(34)10(31)6(3-29)38-17)18(37-5)39-15-8(28-20(24)25)11(32)7(27-19(22)23)12(33)14(15)35/h4-18,26,29,31-36H,3H2,1-2H3,(H4,22,23,27)(H4,24,25,28)/t5-,6-,7+,8-,9-,10-,11+,12-,13-,14+,15+,16-,17-,18-,21+/m0/s1
InChI KeyUCSJYZPVAKXKNQ-HZYVHMACSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces albidoflavusLOTUS Database
Streptomyces avermitilisLOTUS Database
Streptomyces bikiniensisLOTUS Database
Streptomyces coelicolorLOTUS Database
Streptomyces galbusLOTUS Database
Streptomyces glaucescensLOTUS Database
Streptomyces griseusNPAtlas
Streptomyces humidusLOTUS Database
Streptomyces hygroscopicusLOTUS Database
Streptomyces sioyaensisLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as diphenylacetonitriles. These are cyclic aromatic compounds containing a diphenylacetonitrile moiety, which consists of a diphenylmethane linked to and acetonitrile to form 2,2-diphenylacetonitrile.
KingdomOrganic compounds
Super ClassBenzenoids
ClassBenzene and substituted derivatives
Sub ClassDiphenylacetonitriles
Direct ParentDiphenylacetonitriles
Alternative ParentsNot Available
SubstituentsNot Available
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-2.4ALOGPS
logP-7.1ChemAxon
logS-0.96ALOGPS
pKa (Strongest Acidic)11.23ChemAxon
pKa (Strongest Basic)10.24ChemAxon
Physiological Charge3ChemAxon
Hydrogen Acceptor Count19ChemAxon
Hydrogen Donor Count12ChemAxon
Polar Surface Area336.43 ŲChemAxon
Rotatable Bond Count9ChemAxon
Refractivity128.89 m³·mol⁻¹ChemAxon
Polarizability55.74 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA024652
HMDB IDHMDB0015214
DrugBank IDDB01082
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID18508
KEGG Compound IDC00413
BioCyc IDSTREPTOMYCIN
BiGG IDNot Available
Wikipedia LinkStreptomycin
METLIN IDNot Available
PubChem Compound19649
PDB IDSRY
ChEBI ID17076
Good Scents IDNot Available
References
General References
  1. KUEHL FA Jr, PECK RL, et al.: Streptomyces antibiotics; structure of streptomycin. J Am Chem Soc. 1948 Jul;70(7):2325-30. doi: 10.1021/ja01187a006. [PubMed:18875100 ]
  2. Thompson S, Omphroy L, Oetting T: Parinaud's oculoglandular syndrome attributable to an encounter with a wild rabbit. Am J Ophthalmol. 2001 Feb;131(2):283-4. doi: 10.1016/s0002-9394(00)00954-5. [PubMed:11228320 ]
  3. Higa M, Saitoh H, Yamane N, Nakasone I, Miyagi C: [Interpretive compatibility of antimycobacterial susceptibility for Mycobacterium tuberculosis determined by proportion test method on egg-based Ogawa media and broth microdilution test, BrothMIC MTB]. Kekkaku. 2002 Feb;77(2):61-6. [PubMed:11905029 ]
  4. Ruiz P, Rodriguez-Cano F, Zerolo FJ, Casal M: Investigation of the in vitro activity of streptomycin against Mycobacterium tuberculosis. Microb Drug Resist. 2002 Summer;8(2):147-9. doi: 10.1089/107662902760190707. [PubMed:12118520 ]
  5. VICHER EE, SOSKA JW, JACKSON GG: Microbiologic flora of chronic cutaneous ulcers; in vitro sensitivity of microbiologic flora to three antibiotics, penicillin, streptomycin, and bacitracin. AMA Arch Surg. 1953 Mar;66(3):283-91. [PubMed:13030054 ]