NP-MRD: Showing NP-Card for 3-methyl arginine (NP0007883)

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Record Information

Version

2.0

Created at

2020-12-09 05:27:09 UTC

Updated at

2021-07-15 16:58:49 UTC

NP-MRD ID

NP0007883

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-methyl arginine

Provided By

NPAtlas

Description

3-Methylarginine is also known as 3-mearg. 3-Methylarginine is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. 3-methyl arginine is found in Pseudomonas syringae and Pseudomonas syringae pv. syringae. 3-methyl arginine was first documented in 2008 (PMID: 18655083). Based on a literature review very few articles have been published on 3-methylarginine (PMID: 20190091).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242106053D          

 29 28  0  0  0  0            999 V2000
   -0.4331   -1.2701   -0.0230 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0051   -0.0195    0.5271 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0986    1.1630    0.4229 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2090    0.9197    1.1874 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9396   -0.2016    0.7011 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.9097   -0.1687   -0.1375 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3928    1.0315   -0.7054 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.4917   -1.4425   -0.4765 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3810    0.3239    0.0268 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.3421   -0.7351    0.3646 N   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4682    0.6650   -1.3918 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7328    1.5777   -1.8432 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3141    0.0533   -2.3079 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2547   -1.1223   -0.8789 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2557   -1.9903   -0.2738 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1591   -1.7693    0.7694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1548   -0.1927    1.6400 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2261    1.3770   -0.6321 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5463    2.0760    0.8578 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8863    0.6857    2.2427 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8146    1.8244    1.2397 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2056    1.9455   -0.2474 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9420    1.0364   -1.5851 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4634   -1.6330   -0.2068 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8771   -2.1000   -0.9827 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7121    1.2097    0.6105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1554   -1.0249    1.3649 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2530   -1.5507   -0.2516 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9196   -0.6682   -1.9838 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  3  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  2  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
  1 14  1  0  0  0  0
  1 15  1  0  0  0  0
  1 16  1  0  0  0  0
  2 17  1  1  0  0  0
  3 18  1  0  0  0  0
  3 19  1  0  0  0  0
  4 20  1  0  0  0  0
  4 21  1  0  0  0  0
  7 22  1  0  0  0  0
  7 23  1  0  0  0  0
  8 24  1  0  0  0  0
  8 25  1  0  0  0  0
  9 26  1  1  0  0  0
 10 27  1  0  0  0  0
 10 28  1  0  0  0  0
 13 29  1  0  0  0  0
M  END

     RDKit          3D

 29 28  0  0  0  0  0  0  0  0999 V2000
   -0.4331   -1.2701   -0.0230 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0051   -0.0195    0.5271 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0986    1.1630    0.4229 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2090    0.9197    1.1874 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9396   -0.2016    0.7011 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.9097   -0.1687   -0.1375 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3928    1.0315   -0.7054 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.4917   -1.4425   -0.4765 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3810    0.3239    0.0268 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.3421   -0.7351    0.3646 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4682    0.6650   -1.3918 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7328    1.5777   -1.8432 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3141    0.0533   -2.3079 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2547   -1.1223   -0.8789 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2557   -1.9903   -0.2738 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1591   -1.7693    0.7694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1548   -0.1927    1.6400 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2261    1.3770   -0.6321 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5463    2.0760    0.8578 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8863    0.6857    2.2427 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8146    1.8244    1.2397 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2056    1.9455   -0.2474 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9420    1.0364   -1.5851 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4634   -1.6330   -0.2068 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8771   -2.1000   -0.9827 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7121    1.2097    0.6105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1554   -1.0249    1.3649 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2530   -1.5507   -0.2516 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9196   -0.6682   -1.9838 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  3
  6  7  1  0
  6  8  1  0
  2  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  2  0
 11 13  1  0
  1 14  1  0
  1 15  1  0
  1 16  1  0
  2 17  1  1
  3 18  1  0
  3 19  1  0
  4 20  1  0
  4 21  1  0
  7 22  1  0
  7 23  1  0
  8 24  1  0
  8 25  1  0
  9 26  1  1
 10 27  1  0
 10 28  1  0
 13 29  1  0
M  END


  Mrv1652306242106053D          

 29 28  0  0  0  0            999 V2000
   -0.4331   -1.2701   -0.0230 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0051   -0.0195    0.5271 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0986    1.1630    0.4229 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2090    0.9197    1.1874 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9396   -0.2016    0.7011 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.9097   -0.1687   -0.1375 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3928    1.0315   -0.7054 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.4917   -1.4425   -0.4765 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3810    0.3239    0.0268 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.3421   -0.7351    0.3646 N   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4682    0.6650   -1.3918 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7328    1.5777   -1.8432 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3141    0.0533   -2.3079 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2547   -1.1223   -0.8789 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2557   -1.9903   -0.2738 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1591   -1.7693    0.7694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1548   -0.1927    1.6400 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2261    1.3770   -0.6321 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5463    2.0760    0.8578 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8863    0.6857    2.2427 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8146    1.8244    1.2397 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2056    1.9455   -0.2474 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9420    1.0364   -1.5851 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4634   -1.6330   -0.2068 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8771   -2.1000   -0.9827 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7121    1.2097    0.6105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1554   -1.0249    1.3649 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2530   -1.5507   -0.2516 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9196   -0.6682   -1.9838 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  3  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  2  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
  1 14  1  0  0  0  0
  1 15  1  0  0  0  0
  1 16  1  0  0  0  0
  2 17  1  1  0  0  0
  3 18  1  0  0  0  0
  3 19  1  0  0  0  0
  4 20  1  0  0  0  0
  4 21  1  0  0  0  0
  7 22  1  0  0  0  0
  7 23  1  0  0  0  0
  8 24  1  0  0  0  0
  8 25  1  0  0  0  0
  9 26  1  1  0  0  0
 10 27  1  0  0  0  0
 10 28  1  0  0  0  0
 13 29  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0007883

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)[C@@]([H])(N([H])[H])[C@@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])N=C(N([H])[H])N([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C7H16N4O2/c1-4(5(8)6(12)13)2-3-11-7(9)10/h4-5H,2-3,8H2,1H3,(H,12,13)(H4,9,10,11)/t4-,5-/m0/s1

> <INCHI_KEY>
VRWSVIUPXSFVFZ-UHFFFAOYSA-N

> <FORMULA>
C7H16N4O2

> <MOLECULAR_WEIGHT>
188.231

> <EXACT_MASS>
188.127325771

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
29

> <JCHEM_AVERAGE_POLARIZABILITY>
19.176241633053113

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,3S)-2-amino-5-[(diaminomethylidene)amino]-3-methylpentanoic acid

> <ALOGPS_LOGP>
-3.69

> <JCHEM_LOGP>
-2.873240865407828

> <ALOGPS_LOGS>
-1.45

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_ACIDIC>
2.4873921643718866

> <JCHEM_PKA_STRONGEST_BASIC>
11.969305385335051

> <JCHEM_POLAR_SURFACE_AREA>
127.71999999999998

> <JCHEM_REFRACTIVITY>
48.1019

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.62e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3S)-2-amino-5-[(diaminomethylidene)amino]-3-methylpentanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 29 28  0  0  0  0  0  0  0  0999 V2000
   -0.4331   -1.2701   -0.0230 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0051   -0.0195    0.5271 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0986    1.1630    0.4229 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2090    0.9197    1.1874 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9396   -0.2016    0.7011 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.9097   -0.1687   -0.1375 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3928    1.0315   -0.7054 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.4917   -1.4425   -0.4765 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3810    0.3239    0.0268 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.3421   -0.7351    0.3646 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4682    0.6650   -1.3918 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7328    1.5777   -1.8432 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3141    0.0533   -2.3079 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2547   -1.1223   -0.8789 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2557   -1.9903   -0.2738 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1591   -1.7693    0.7694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1548   -0.1927    1.6400 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2261    1.3770   -0.6321 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5463    2.0760    0.8578 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8863    0.6857    2.2427 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8146    1.8244    1.2397 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2056    1.9455   -0.2474 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9420    1.0364   -1.5851 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4634   -1.6330   -0.2068 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8771   -2.1000   -0.9827 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7121    1.2097    0.6105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1554   -1.0249    1.3649 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2530   -1.5507   -0.2516 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9196   -0.6682   -1.9838 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  3
  6  7  1  0
  6  8  1  0
  2  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  2  0
 11 13  1  0
  1 14  1  0
  1 15  1  0
  1 16  1  0
  2 17  1  1
  3 18  1  0
  3 19  1  0
  4 20  1  0
  4 21  1  0
  7 22  1  0
  7 23  1  0
  8 24  1  0
  8 25  1  0
  9 26  1  1
 10 27  1  0
 10 28  1  0
 13 29  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -0.433  -1.270  -0.023  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.005  -0.020   0.527  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.099   1.163   0.423  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.209   0.920   1.187  0.00  0.00           C+0
HETATM    5  N   UNK     0       1.940  -0.202   0.701  0.00  0.00           N+0
HETATM    6  C   UNK     0       2.910  -0.169  -0.138  0.00  0.00           C+0
HETATM    7  N   UNK     0       3.393   1.032  -0.705  0.00  0.00           N+0
HETATM    8  N   UNK     0       3.492  -1.442  -0.477  0.00  0.00           N+0
HETATM    9  C   UNK     0      -2.381   0.324   0.027  0.00  0.00           C+0
HETATM   10  N   UNK     0      -3.342  -0.735   0.365  0.00  0.00           N+0
HETATM   11  C   UNK     0      -2.468   0.665  -1.392  0.00  0.00           C+0
HETATM   12  O   UNK     0      -1.733   1.578  -1.843  0.00  0.00           O+0
HETATM   13  O   UNK     0      -3.314   0.053  -2.308  0.00  0.00           O+0
HETATM   14  H   UNK     0       0.255  -1.122  -0.879  0.00  0.00           H+0
HETATM   15  H   UNK     0      -1.256  -1.990  -0.274  0.00  0.00           H+0
HETATM   16  H   UNK     0       0.159  -1.769   0.769  0.00  0.00           H+0
HETATM   17  H   UNK     0      -1.155  -0.193   1.640  0.00  0.00           H+0
HETATM   18  H   UNK     0       0.226   1.377  -0.632  0.00  0.00           H+0
HETATM   19  H   UNK     0      -0.546   2.076   0.858  0.00  0.00           H+0
HETATM   20  H   UNK     0       0.886   0.686   2.243  0.00  0.00           H+0
HETATM   21  H   UNK     0       1.815   1.824   1.240  0.00  0.00           H+0
HETATM   22  H   UNK     0       3.206   1.946  -0.247  0.00  0.00           H+0
HETATM   23  H   UNK     0       3.942   1.036  -1.585  0.00  0.00           H+0
HETATM   24  H   UNK     0       4.463  -1.633  -0.207  0.00  0.00           H+0
HETATM   25  H   UNK     0       2.877  -2.100  -0.983  0.00  0.00           H+0
HETATM   26  H   UNK     0      -2.712   1.210   0.611  0.00  0.00           H+0
HETATM   27  H   UNK     0      -3.155  -1.025   1.365  0.00  0.00           H+0
HETATM   28  H   UNK     0      -3.253  -1.551  -0.252  0.00  0.00           H+0
HETATM   29  H   UNK     0      -3.920  -0.668  -1.984  0.00  0.00           H+0
CONECT    1    2   14   15   16                                             
CONECT    2    1    3    9   17                                             
CONECT    3    2    4   18   19                                             
CONECT    4    3    5   20   21                                             
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6   22   23                                                  
CONECT    8    6   24   25                                                  
CONECT    9    2   10   11   26                                             
CONECT   10    9   27   28                                                  
CONECT   11    9   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   29                                                       
CONECT   14    1                                                            
CONECT   15    1                                                            
CONECT   16    1                                                            
CONECT   17    2                                                            
CONECT   18    3                                                            
CONECT   19    3                                                            
CONECT   20    4                                                            
CONECT   21    4                                                            
CONECT   22    7                                                            
CONECT   23    7                                                            
CONECT   24    8                                                            
CONECT   25    8                                                            
CONECT   26    9                                                            
CONECT   27   10                                                            
CONECT   28   10                                                            
CONECT   29   13                                                            
MASTER        0    0    0    0    0    0    0    0   29    0   56    0
END

RDKit          3D

29 28  0  0  0  0  0  0  0  0999 V2000
   -0.4331   -1.2701   -0.0230 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0051   -0.0195    0.5271 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0986    1.1630    0.4229 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2090    0.9197    1.1874 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9396   -0.2016    0.7011 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.9097   -0.1687   -0.1375 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3928    1.0315   -0.7054 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.4917   -1.4425   -0.4765 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3810    0.3239    0.0268 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.3421   -0.7351    0.3646 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4682    0.6650   -1.3918 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7328    1.5777   -1.8432 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3141    0.0533   -2.3079 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2547   -1.1223   -0.8789 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2557   -1.9903   -0.2738 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1591   -1.7693    0.7694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1548   -0.1927    1.6400 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2261    1.3770   -0.6321 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5463    2.0760    0.8578 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8863    0.6857    2.2427 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8146    1.8244    1.2397 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2056    1.9455   -0.2474 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9420    1.0364   -1.5851 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4634   -1.6330   -0.2068 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8771   -2.1000   -0.9827 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7121    1.2097    0.6105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1554   -1.0249    1.3649 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2530   -1.5507   -0.2516 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9196   -0.6682   -1.9838 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  3
  6  7  1  0
  6  8  1  0
  2  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  2  0
 11 13  1  0
  1 14  1  0
  1 15  1  0
  1 16  1  0
  2 17  1  1
  3 18  1  0
  3 19  1  0
  4 20  1  0
  4 21  1  0
  7 22  1  0
  7 23  1  0
  8 24  1  0
  8 25  1  0
  9 26  1  1
 10 27  1  0
 10 28  1  0
 13 29  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
2-Amino-5-(diaminomethylideneamino)-3-methylpentanoic acid	ChEBI
2-Amino-5-carbamimidamido-3-methylpentanoic acid	ChEBI
3-MeArg	ChEBI
3-Methyl-arg	ChEBI
2-Amino-5-(diaminomethylideneamino)-3-methylpentanoate	Generator
2-Amino-5-carbamimidamido-3-methylpentanoate	Generator

Chemical Formula

C₇H₁₆N₄O₂

Average Mass

188.2310 Da

Monoisotopic Mass

188.12733 Da

IUPAC Name

(2S,3S)-2-amino-5-[(diaminomethylidene)amino]-3-methylpentanoic acid

Traditional Name

(2S,3S)-2-amino-5-[(diaminomethylidene)amino]-3-methylpentanoic acid

CAS Registry Number

Not Available

SMILES

CC(CCN=C(N)N)C(N)C(O)=O

InChI Identifier

InChI=1S/C7H16N4O2/c1-4(5(8)6(12)13)2-3-11-7(9)10/h4-5H,2-3,8H2,1H3,(H,12,13)(H4,9,10,11)

InChI Key

VRWSVIUPXSFVFZ-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Pseudomonas syringae	LOTUS Database	35616633
Pseudomonas syringae pv. syringae	NPAtlas	18655083

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-3.7	ALOGPS
logP	-2.9	ChemAxon
logS	-1.4	ALOGPS
pKa (Strongest Acidic)	2.49	ChemAxon
pKa (Strongest Basic)	11.97	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	127.72 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	48.1 m³·mol⁻¹	ChemAxon
Polarizability	19.18 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA024795

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

96340229

KEGG Compound ID

Not Available

BioCyc ID

CPD-12429

BiGG ID

Not Available

Wikipedia Link

Methylarginine

METLIN ID

Not Available

PubChem Compound

46173348

PDB ID

Not Available

ChEBI ID

171656

Good Scents ID

Not Available

References

General References

Braun SD, Volksch B, Nuske J, Spiteller D: 3-Methylarginine from Pseudomonas syringae pv. syringae 22d/93 suppresses the bacterial blight caused by its close relative Pseudomonas syringae pv. glycinea. Chembiochem. 2008 Aug 11;9(12):1913-20. doi: 10.1002/cbic.200800080. [PubMed:18655083 ]
Braun SD, Hofmann J, Wensing A, Ullrich MS, Weingart H, Volksch B, Spiteller D: Identification of the biosynthetic gene cluster for 3-methylarginine, a toxin produced by Pseudomonas syringae pv. syringae 22d/93. Appl Environ Microbiol. 2010 Apr;76(8):2500-8. doi: 10.1128/AEM.00666-09. Epub 2010 Feb 26. [PubMed:20190091 ]

Showing NP-Card for 3-methyl arginine (NP0007883)

MOL for NP0007883 (3-methyl arginine)

3D MOL for NP0007883 (3-methyl arginine)

3D SDF for NP0007883 (3-methyl arginine)

3D-SDF for NP0007883 (3-methyl arginine)

PDB for NP0007883 (3-methyl arginine)

3D PDB for NP0007883 (3-methyl arginine)

SMILES for NP0007883 (3-methyl arginine)

INCHI for NP0007883 (3-methyl arginine)

Structure for NP0007883 (3-methyl arginine)

3D Structure for NP0007883 (3-methyl arginine)