NP-MRD: Showing NP-Card for Hymenoic acid (NP0007667)

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Record Information

Version

2.0

Created at

2020-12-09 04:29:16 UTC

Updated at

2021-07-15 16:58:13 UTC

NP-MRD ID

NP0007667

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Hymenoic acid

Provided By

NPAtlas

Description

Hymenoic acid, also known as hymenoate, belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. Hymenoic acid is found in Hymenochaete sp. Hymenoic acid was first documented in 2008 (PMID: 18364258). Based on a literature review very few articles have been published on Hymenoic acid (PMID: 29207915).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242119023D          

 43 43  0  0  0  0            999 V2000
   -0.3188    1.3266   -0.2554 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3320   -0.1522   -0.1093 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8127   -0.8020   -0.2297 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1029   -0.1335   -0.5017 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1199   -0.3930    0.6181 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3775    0.3353    0.2228 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8987   -0.1721   -1.0822 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3974    0.3288    1.2974 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2603   -0.2078    2.4086 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5975    0.9753    1.0336 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6287   -0.8464    0.1663 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5400   -0.5716   -0.9983 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9707   -0.8707   -0.7410 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.4478   -0.5071    0.6374 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.8388    0.9038    0.7605 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0085    1.2071    1.1007 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9748    1.9639    0.5184 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4996   -0.9041    1.7295 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1605   -0.3021    1.4646 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3306    1.7507   -0.2192 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1283    1.6514   -1.2255 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2322    1.7350    0.6153 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8026   -1.8765   -0.1235 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5496   -0.4134   -1.4771 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9451    0.9724   -0.5484 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3596   -1.4802    0.6500 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7335   -0.0824    1.5871 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0895    1.4114    0.0749 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6811   -1.2664   -1.2140 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3930    0.3301   -1.9527 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9735    0.0562   -1.1442 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7212    1.9701    1.0601 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4945   -1.9249    0.2738 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1981   -1.2573   -1.8288 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3803    0.4575   -1.3971 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5908   -0.2752   -1.4687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1971   -1.9329   -0.9466 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3701   -1.1292    0.8012 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8891    2.4340   -0.3627 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4555   -2.0108    1.8076 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8873   -0.4633    2.6746 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4387   -0.6184    2.2553 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2242    0.7843    1.5097 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
  2 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 14 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 11  1  0  0  0  0
  1 20  1  0  0  0  0
  1 21  1  0  0  0  0
  1 22  1  0  0  0  0
  3 23  1  0  0  0  0
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  6 28  1  6  0  0  0
  7 29  1  0  0  0  0
  7 30  1  0  0  0  0
  7 31  1  0  0  0  0
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 12 34  1  0  0  0  0
 12 35  1  0  0  0  0
 13 36  1  0  0  0  0
 13 37  1  0  0  0  0
 14 38  1  1  0  0  0
 17 39  1  0  0  0  0
 18 40  1  0  0  0  0
 18 41  1  0  0  0  0
 19 42  1  0  0  0  0
 19 43  1  0  0  0  0
M  END

     RDKit          3D

 43 43  0  0  0  0  0  0  0  0999 V2000
   -0.3188    1.3266   -0.2554 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3320   -0.1522   -0.1093 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8127   -0.8020   -0.2297 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1029   -0.1335   -0.5017 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1199   -0.3930    0.6181 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3775    0.3353    0.2228 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8987   -0.1721   -1.0822 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3974    0.3288    1.2974 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2603   -0.2078    2.4086 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5975    0.9753    1.0336 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6287   -0.8464    0.1663 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5400   -0.5716   -0.9983 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9707   -0.8707   -0.7410 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4478   -0.5071    0.6374 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.8388    0.9038    0.7605 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0085    1.2071    1.1007 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9748    1.9639    0.5184 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4996   -0.9041    1.7295 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1605   -0.3021    1.4646 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3306    1.7507   -0.2192 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1283    1.6514   -1.2255 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2322    1.7350    0.6153 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8026   -1.8765   -0.1235 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5496   -0.4134   -1.4771 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9451    0.9724   -0.5484 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3596   -1.4802    0.6500 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7335   -0.0824    1.5871 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0895    1.4114    0.0749 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6811   -1.2664   -1.2140 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3930    0.3301   -1.9527 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9735    0.0562   -1.1442 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7212    1.9701    1.0601 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4945   -1.9249    0.2738 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1981   -1.2573   -1.8288 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3803    0.4575   -1.3971 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5908   -0.2752   -1.4687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1971   -1.9329   -0.9466 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3701   -1.1292    0.8012 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8891    2.4340   -0.3627 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4555   -2.0108    1.8076 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8873   -0.4633    2.6746 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4387   -0.6184    2.2553 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2242    0.7843    1.5097 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  2  0
  8 10  1  0
  2 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 15 17  1  0
 14 18  1  0
 18 19  1  0
 19 11  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  3 23  1  0
  4 24  1  0
  4 25  1  0
  5 26  1  0
  5 27  1  0
  6 28  1  6
  7 29  1  0
  7 30  1  0
  7 31  1  0
 10 32  1  0
 11 33  1  1
 12 34  1  0
 12 35  1  0
 13 36  1  0
 13 37  1  0
 14 38  1  1
 17 39  1  0
 18 40  1  0
 18 41  1  0
 19 42  1  0
 19 43  1  0
M  END


  Mrv1652306242119023D          

 43 43  0  0  0  0            999 V2000
   -0.3188    1.3266   -0.2554 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3320   -0.1522   -0.1093 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8127   -0.8020   -0.2297 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1029   -0.1335   -0.5017 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1199   -0.3930    0.6181 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3775    0.3353    0.2228 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8987   -0.1721   -1.0822 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3974    0.3288    1.2974 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2603   -0.2078    2.4086 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5975    0.9753    1.0336 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6287   -0.8464    0.1663 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5400   -0.5716   -0.9983 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9707   -0.8707   -0.7410 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.4478   -0.5071    0.6374 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.8388    0.9038    0.7605 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0085    1.2071    1.1007 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9748    1.9639    0.5184 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4996   -0.9041    1.7295 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1605   -0.3021    1.4646 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3306    1.7507   -0.2192 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1283    1.6514   -1.2255 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2322    1.7350    0.6153 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8026   -1.8765   -0.1235 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5496   -0.4134   -1.4771 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9451    0.9724   -0.5484 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3596   -1.4802    0.6500 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7335   -0.0824    1.5871 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0895    1.4114    0.0749 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6811   -1.2664   -1.2140 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3930    0.3301   -1.9527 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9735    0.0562   -1.1442 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7212    1.9701    1.0601 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4945   -1.9249    0.2738 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1981   -1.2573   -1.8288 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3803    0.4575   -1.3971 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5908   -0.2752   -1.4687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1971   -1.9329   -0.9466 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3701   -1.1292    0.8012 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8891    2.4340   -0.3627 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4555   -2.0108    1.8076 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8873   -0.4633    2.6746 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4387   -0.6184    2.2553 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2242    0.7843    1.5097 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
  2 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 14 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 11  1  0  0  0  0
  1 20  1  0  0  0  0
  1 21  1  0  0  0  0
  1 22  1  0  0  0  0
  3 23  1  0  0  0  0
  4 24  1  0  0  0  0
  4 25  1  0  0  0  0
  5 26  1  0  0  0  0
  5 27  1  0  0  0  0
  6 28  1  6  0  0  0
  7 29  1  0  0  0  0
  7 30  1  0  0  0  0
  7 31  1  0  0  0  0
 10 32  1  0  0  0  0
 11 33  1  1  0  0  0
 12 34  1  0  0  0  0
 12 35  1  0  0  0  0
 13 36  1  0  0  0  0
 13 37  1  0  0  0  0
 14 38  1  1  0  0  0
 17 39  1  0  0  0  0
 18 40  1  0  0  0  0
 18 41  1  0  0  0  0
 19 42  1  0  0  0  0
 19 43  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0007667

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)[C@@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])C(\[H])=C(/C([H])([H])[H])[C@]1([H])C([H])([H])C([H])([H])[C@]([H])(C(=O)O[H])C([H])([H])C1([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C15H24O4/c1-10(4-3-5-11(2)14(16)17)12-6-8-13(9-7-12)15(18)19/h4,11-13H,3,5-9H2,1-2H3,(H,16,17)(H,18,19)/b10-4+/t11-,12-,13+/m0/s1

> <INCHI_KEY>
LTNNRLSIPOPBOC-AIPMOWSPSA-N

> <FORMULA>
C15H24O4

> <MOLECULAR_WEIGHT>
268.353

> <EXACT_MASS>
268.167459253

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
43

> <JCHEM_AVERAGE_POLARIZABILITY>
30.093339596656165

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1s,4s)-4-[(2E,6S)-6-carboxy-6-methylhex-2-en-2-yl]cyclohexane-1-carboxylic acid

> <ALOGPS_LOGP>
2.50

> <JCHEM_LOGP>
3.504203053

> <ALOGPS_LOGS>
-3.13

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
5.187558988706781

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.576588439443073

> <JCHEM_POLAR_SURFACE_AREA>
74.6

> <JCHEM_REFRACTIVITY>
73.03800000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.01e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1s,4s)-4-[(2E,6S)-6-carboxy-6-methylhex-2-en-2-yl]cyclohexane-1-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 43 43  0  0  0  0  0  0  0  0999 V2000
   -0.3188    1.3266   -0.2554 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3320   -0.1522   -0.1093 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8127   -0.8020   -0.2297 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1029   -0.1335   -0.5017 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1199   -0.3930    0.6181 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3775    0.3353    0.2228 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8987   -0.1721   -1.0822 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3974    0.3288    1.2974 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2603   -0.2078    2.4086 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5975    0.9753    1.0336 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6287   -0.8464    0.1663 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5400   -0.5716   -0.9983 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9707   -0.8707   -0.7410 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4478   -0.5071    0.6374 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.8388    0.9038    0.7605 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0085    1.2071    1.1007 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9748    1.9639    0.5184 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4996   -0.9041    1.7295 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1605   -0.3021    1.4646 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3306    1.7507   -0.2192 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1283    1.6514   -1.2255 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2322    1.7350    0.6153 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8026   -1.8765   -0.1235 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5496   -0.4134   -1.4771 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9451    0.9724   -0.5484 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3596   -1.4802    0.6500 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7335   -0.0824    1.5871 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0895    1.4114    0.0749 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6811   -1.2664   -1.2140 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3930    0.3301   -1.9527 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9735    0.0562   -1.1442 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7212    1.9701    1.0601 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4945   -1.9249    0.2738 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1981   -1.2573   -1.8288 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3803    0.4575   -1.3971 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5908   -0.2752   -1.4687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1971   -1.9329   -0.9466 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3701   -1.1292    0.8012 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8891    2.4340   -0.3627 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4555   -2.0108    1.8076 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8873   -0.4633    2.6746 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4387   -0.6184    2.2553 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2242    0.7843    1.5097 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  2  0
  8 10  1  0
  2 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 15 17  1  0
 14 18  1  0
 18 19  1  0
 19 11  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  3 23  1  0
  4 24  1  0
  4 25  1  0
  5 26  1  0
  5 27  1  0
  6 28  1  6
  7 29  1  0
  7 30  1  0
  7 31  1  0
 10 32  1  0
 11 33  1  1
 12 34  1  0
 12 35  1  0
 13 36  1  0
 13 37  1  0
 14 38  1  1
 17 39  1  0
 18 40  1  0
 18 41  1  0
 19 42  1  0
 19 43  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -0.319   1.327  -0.255  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.332  -0.152  -0.109  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.813  -0.802  -0.230  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.103  -0.134  -0.502  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.120  -0.393   0.618  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.378   0.335   0.223  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.899  -0.172  -1.082  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.397   0.329   1.297  0.00  0.00           C+0
HETATM    9  O   UNK     0       5.260  -0.208   2.409  0.00  0.00           O+0
HETATM   10  O   UNK     0       6.598   0.975   1.034  0.00  0.00           O+0
HETATM   11  C   UNK     0      -1.629  -0.846   0.166  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.540  -0.572  -0.998  0.00  0.00           C+0
HETATM   13  C   UNK     0      -3.971  -0.871  -0.741  0.00  0.00           C+0
HETATM   14  C   UNK     0      -4.448  -0.507   0.637  0.00  0.00           C+0
HETATM   15  C   UNK     0      -4.839   0.904   0.761  0.00  0.00           C+0
HETATM   16  O   UNK     0      -6.008   1.207   1.101  0.00  0.00           O+0
HETATM   17  O   UNK     0      -3.975   1.964   0.518  0.00  0.00           O+0
HETATM   18  C   UNK     0      -3.500  -0.904   1.730  0.00  0.00           C+0
HETATM   19  C   UNK     0      -2.160  -0.302   1.465  0.00  0.00           C+0
HETATM   20  H   UNK     0      -1.331   1.751  -0.219  0.00  0.00           H+0
HETATM   21  H   UNK     0       0.128   1.651  -1.226  0.00  0.00           H+0
HETATM   22  H   UNK     0       0.232   1.735   0.615  0.00  0.00           H+0
HETATM   23  H   UNK     0       0.803  -1.877  -0.124  0.00  0.00           H+0
HETATM   24  H   UNK     0       2.550  -0.413  -1.477  0.00  0.00           H+0
HETATM   25  H   UNK     0       1.945   0.972  -0.548  0.00  0.00           H+0
HETATM   26  H   UNK     0       3.360  -1.480   0.650  0.00  0.00           H+0
HETATM   27  H   UNK     0       2.733  -0.082   1.587  0.00  0.00           H+0
HETATM   28  H   UNK     0       4.090   1.411   0.075  0.00  0.00           H+0
HETATM   29  H   UNK     0       4.681  -1.266  -1.214  0.00  0.00           H+0
HETATM   30  H   UNK     0       4.393   0.330  -1.953  0.00  0.00           H+0
HETATM   31  H   UNK     0       5.973   0.056  -1.144  0.00  0.00           H+0
HETATM   32  H   UNK     0       6.721   1.970   1.060  0.00  0.00           H+0
HETATM   33  H   UNK     0      -1.494  -1.925   0.274  0.00  0.00           H+0
HETATM   34  H   UNK     0      -2.198  -1.257  -1.829  0.00  0.00           H+0
HETATM   35  H   UNK     0      -2.380   0.458  -1.397  0.00  0.00           H+0
HETATM   36  H   UNK     0      -4.591  -0.275  -1.469  0.00  0.00           H+0
HETATM   37  H   UNK     0      -4.197  -1.933  -0.947  0.00  0.00           H+0
HETATM   38  H   UNK     0      -5.370  -1.129   0.801  0.00  0.00           H+0
HETATM   39  H   UNK     0      -3.889   2.434  -0.363  0.00  0.00           H+0
HETATM   40  H   UNK     0      -3.455  -2.011   1.808  0.00  0.00           H+0
HETATM   41  H   UNK     0      -3.887  -0.463   2.675  0.00  0.00           H+0
HETATM   42  H   UNK     0      -1.439  -0.618   2.255  0.00  0.00           H+0
HETATM   43  H   UNK     0      -2.224   0.784   1.510  0.00  0.00           H+0
CONECT    1    2   20   21   22                                             
CONECT    2    1    3   11                                                  
CONECT    3    2    4   23                                                  
CONECT    4    3    5   24   25                                             
CONECT    5    4    6   26   27                                             
CONECT    6    5    7    8   28                                             
CONECT    7    6   29   30   31                                             
CONECT    8    6    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   32                                                       
CONECT   11    2   12   19   33                                             
CONECT   12   11   13   34   35                                             
CONECT   13   12   14   36   37                                             
CONECT   14   13   15   18   38                                             
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   39                                                       
CONECT   18   14   19   40   41                                             
CONECT   19   18   11   42   43                                             
CONECT   20    1                                                            
CONECT   21    1                                                            
CONECT   22    1                                                            
CONECT   23    3                                                            
CONECT   24    4                                                            
CONECT   25    4                                                            
CONECT   26    5                                                            
CONECT   27    5                                                            
CONECT   28    6                                                            
CONECT   29    7                                                            
CONECT   30    7                                                            
CONECT   31    7                                                            
CONECT   32   10                                                            
CONECT   33   11                                                            
CONECT   34   12                                                            
CONECT   35   12                                                            
CONECT   36   13                                                            
CONECT   37   13                                                            
CONECT   38   14                                                            
CONECT   39   17                                                            
CONECT   40   18                                                            
CONECT   41   18                                                            
CONECT   42   19                                                            
CONECT   43   19                                                            
MASTER        0    0    0    0    0    0    0    0   43    0   86    0
END

RDKit          3D

43 43  0  0  0  0  0  0  0  0999 V2000
   -0.3188    1.3266   -0.2554 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3320   -0.1522   -0.1093 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8127   -0.8020   -0.2297 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1029   -0.1335   -0.5017 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1199   -0.3930    0.6181 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3775    0.3353    0.2228 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8987   -0.1721   -1.0822 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3974    0.3288    1.2974 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2603   -0.2078    2.4086 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5975    0.9753    1.0336 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6287   -0.8464    0.1663 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5400   -0.5716   -0.9983 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9707   -0.8707   -0.7410 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4478   -0.5071    0.6374 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.8388    0.9038    0.7605 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0085    1.2071    1.1007 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9748    1.9639    0.5184 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4996   -0.9041    1.7295 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1605   -0.3021    1.4646 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3306    1.7507   -0.2192 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1283    1.6514   -1.2255 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2322    1.7350    0.6153 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8026   -1.8765   -0.1235 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5496   -0.4134   -1.4771 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9451    0.9724   -0.5484 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3596   -1.4802    0.6500 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7335   -0.0824    1.5871 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0895    1.4114    0.0749 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6811   -1.2664   -1.2140 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3930    0.3301   -1.9527 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9735    0.0562   -1.1442 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7212    1.9701    1.0601 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4945   -1.9249    0.2738 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1981   -1.2573   -1.8288 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3803    0.4575   -1.3971 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5908   -0.2752   -1.4687 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1971   -1.9329   -0.9466 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3701   -1.1292    0.8012 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8891    2.4340   -0.3627 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4555   -2.0108    1.8076 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8873   -0.4633    2.6746 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4387   -0.6184    2.2553 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2242    0.7843    1.5097 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  2  0
  8 10  1  0
  2 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 15 17  1  0
 14 18  1  0
 18 19  1  0
 19 11  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  3 23  1  0
  4 24  1  0
  4 25  1  0
  5 26  1  0
  5 27  1  0
  6 28  1  6
  7 29  1  0
  7 30  1  0
  7 31  1  0
 10 32  1  0
 11 33  1  1
 12 34  1  0
 12 35  1  0
 13 36  1  0
 13 37  1  0
 14 38  1  1
 17 39  1  0
 18 40  1  0
 18 41  1  0
 19 42  1  0
 19 43  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
Hymenoate	Generator
trans-4-((1'e,5's)-5'-Carboxy-1'-methyl-1'-hexenyl)cyclohexanecarboxylic acid	MeSH
4-[(2E,6S)-6-Carboxy-6-methylhex-2-en-2-yl]cyclohexane-1-carboxylate	Generator

Chemical Formula

C₁₅H₂₄O₄

Average Mass

268.3530 Da

Monoisotopic Mass

268.16746 Da

IUPAC Name

(1s,4s)-4-[(2E,6S)-6-carboxy-6-methylhex-2-en-2-yl]cyclohexane-1-carboxylic acid

Traditional Name

(1s,4s)-4-[(2E,6S)-6-carboxy-6-methylhex-2-en-2-yl]cyclohexane-1-carboxylic acid

CAS Registry Number

Not Available

SMILES

C[C@@H](CC\C=C(/C)C1CCC(CC1)C(O)=O)C(O)=O

InChI Identifier

InChI=1S/C15H24O4/c1-10(4-3-5-11(2)14(16)17)12-6-8-13(9-7-12)15(18)19/h4,11-13H,3,5-9H2,1-2H3,(H,16,17)(H,18,19)/b10-4+/t11-,12?,13?/m0/s1

InChI Key

LTNNRLSIPOPBOC-AIPMOWSPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Hymenochaete sp.	NPAtlas	18364258

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Sesquiterpenoid
Bisabolane sesquiterpenoid
Medium-chain fatty acid
Branched fatty acid
Methyl-branched fatty acid
Dicarboxylic acid or derivatives
Unsaturated fatty acid
Fatty acyl
Fatty acid
Carboxylic acid
Carboxylic acid derivative
Organic oxide
Organooxygen compound
Hydrocarbon derivative
Organic oxygen compound
Carbonyl group
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.5	ALOGPS
logP	3.5	ChemAxon
logS	-3.1	ALOGPS
pKa (Strongest Acidic)	4.58	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	74.6 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	73.04 m³·mol⁻¹	ChemAxon
Polarizability	30.09 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA014957

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78438066

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

25014973

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Nishida M, Ida N, Horio M, Takeuchi T, Kamisuki S, Murata H, Kuramochi K, Sugawara F, Yoshida H, Mizushina Y: Hymenoic acid, a novel specific inhibitor of human DNA polymerase lambda from a fungus of Hymenochaetaceae sp. Bioorg Med Chem. 2008 May 1;16(9):5115-22. doi: 10.1016/j.bmc.2008.03.021. Epub 2008 Mar 10. [PubMed:18364258 ]
Takahashi K, Matsui M, Kuse M, Takikawa H: First synthesis of (S)-(+)-hymenoic acid, a DNA polymerase lambda inhibitor isolated from Hymenochaetaceae sp. Biosci Biotechnol Biochem. 2018 Jan;82(1):42-45. doi: 10.1080/09168451.2017.1406302. Epub 2017 Dec 6. [PubMed:29207915 ]

Showing NP-Card for Hymenoic acid (NP0007667)

MOL for NP0007667 (Hymenoic acid)

3D MOL for NP0007667 (Hymenoic acid)

3D SDF for NP0007667 (Hymenoic acid)

3D-SDF for NP0007667 (Hymenoic acid)

PDB for NP0007667 (Hymenoic acid)

3D PDB for NP0007667 (Hymenoic acid)

SMILES for NP0007667 (Hymenoic acid)

INCHI for NP0007667 (Hymenoic acid)

Structure for NP0007667 (Hymenoic acid)

3D Structure for NP0007667 (Hymenoic acid)