NP-MRD: Showing NP-Card for Panglimycin C (NP0007460)

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Record Information

Version

2.0

Created at

2020-12-09 04:20:17 UTC

Updated at

2021-07-15 16:57:39 UTC

NP-MRD ID

NP0007460

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Panglimycin C

Provided By

NPAtlas

Description

(3R,6aR,7R,12aR)-6a,7,8-trihydroxy-3-methyl-1,2,3,4,5,6,6a,7,12,12a-decahydrotetraphene-1,12-dione belongs to the class of organic compounds known as tetralins. These are polycyclic aromatic compounds containing a tetralin moiety, which consists of a benzene fused to a cyclohexane. Panglimycin C is found in Streptomyces. Based on a literature review very few articles have been published on (3R,6aR,7R,12aR)-6a,7,8-trihydroxy-3-methyl-1,2,3,4,5,6,6a,7,12,12a-decahydrotetraphene-1,12-dione.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118403D          

 44 47  0  0  0  0            999 V2000
    5.4038    0.1893    0.6015 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0391    0.0395   -0.0217 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6828   -1.4249   -0.0197 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2355   -1.6448    0.2374 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8587   -2.8191    0.4827 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2371   -0.5833    0.2211 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6709    0.6582    0.3023 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8648    1.8464   -0.0508 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5471    1.5257   -0.4049 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7292    0.1392   -0.9517 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0827   -0.0158   -2.0453 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2157   -0.8245    0.1194 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9539   -0.5356    1.3475 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4259   -0.3224    2.4682 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4107   -0.4919    1.2642 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2079   -0.6329    2.3828 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5808   -0.5866    2.2691 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1247   -0.3970    1.0165 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3586   -0.2527   -0.1200 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9187   -0.0607   -1.3872 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9765   -0.3030    0.0203 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1704   -0.1452   -1.2166 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7307    0.8046   -2.0746 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0629    0.8653    0.7816 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.7087    1.2379    0.6977 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.9513    2.5765    0.7987 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3572    2.3313   -0.9222 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1659    1.6808    0.5199 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.4558   -1.8404   -0.2557 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.2117   -0.6973    3.1479 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2019   -0.3609    0.9290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8993   -0.0197   -1.5238 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2074   -1.1267   -1.7752 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6402    0.5219   -3.0191 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0876    0.5455    1.8433 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3781    1.9320    0.6616 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
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  6  7  2  0  0  0  0
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  8 31  1  0  0  0  0
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  9 33  1  0  0  0  0
  9 34  1  0  0  0  0
 11 35  1  0  0  0  0
 12 36  1  6  0  0  0
 16 37  1  0  0  0  0
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 22 41  1  6  0  0  0
 23 42  1  0  0  0  0
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 24 44  1  0  0  0  0
M  END

     RDKit          3D

 44 47  0  0  0  0  0  0  0  0999 V2000
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    4.0391    0.0395   -0.0217 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6828   -1.4249   -0.0197 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2355   -1.6448    0.2374 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8587   -2.8191    0.4827 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2371   -0.5833    0.2211 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6709    0.6582    0.3023 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8648    1.8464   -0.0508 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5471    1.5257   -0.4049 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7292    0.1392   -0.9517 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -0.2157   -0.8245    0.1194 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -0.4259   -0.3224    2.4682 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4107   -0.4919    1.2642 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2079   -0.6329    2.3828 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.7307    0.8046   -2.0746 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0629    0.8653    0.7816 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7087    1.2379    0.6977 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3813   -0.3486    1.5758 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1075   -0.4064   -0.0479 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.2578   -1.9906    0.7337 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9513    2.5765    0.7987 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3572    2.3313   -0.9222 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1659    1.6808    0.5199 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9731    2.2358   -1.1607 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3732    0.8365   -2.4588 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4558   -1.8404   -0.2557 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7047   -0.7779    3.3284 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2117   -0.6973    3.1479 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2019   -0.3609    0.9290 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.0876    0.5455    1.8433 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3781    1.9320    0.6616 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
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M  END


  Mrv1652306242118403D          

 44 47  0  0  0  0            999 V2000
    5.4038    0.1893    0.6015 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0391    0.0395   -0.0217 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6828   -1.4249   -0.0197 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2355   -1.6448    0.2374 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8587   -2.8191    0.4827 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2371   -0.5833    0.2211 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.3781    1.9320    0.6616 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  2  0  0  0  0
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 24  2  1  0  0  0  0
 12  6  1  0  0  0  0
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  8 31  1  0  0  0  0
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  9 33  1  0  0  0  0
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 11 35  1  0  0  0  0
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 16 37  1  0  0  0  0
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 22 41  1  6  0  0  0
 23 42  1  0  0  0  0
 24 43  1  0  0  0  0
 24 44  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0007460

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C2C(=C([H])C([H])=C1[H])C(=O)[C@]1([H])C3=C(C([H])([H])C([H])([H])[C@]1(O[H])[C@]2([H])O[H])C([H])([H])[C@@]([H])(C([H])([H])[H])C([H])([H])C3=O

> <INCHI_IDENTIFIER>
InChI=1S/C19H20O5/c1-9-7-10-5-6-19(24)16(14(10)13(21)8-9)17(22)11-3-2-4-12(20)15(11)18(19)23/h2-4,9,16,18,20,23-24H,5-8H2,1H3/t9-,16+,18-,19-/m1/s1

> <INCHI_KEY>
CRULJZWXPCYLAC-BXXNDXQRSA-N

> <FORMULA>
C19H20O5

> <MOLECULAR_WEIGHT>
328.364

> <EXACT_MASS>
328.131073744

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
44

> <JCHEM_AVERAGE_POLARIZABILITY>
33.59536320902052

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3R,6aR,7R,12aR)-6a,7,8-trihydroxy-3-methyl-1,2,3,4,5,6,6a,7,12,12a-decahydrotetraphene-1,12-dione

> <ALOGPS_LOGP>
1.48

> <JCHEM_LOGP>
1.3246282856666673

> <ALOGPS_LOGS>
-2.31

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.29611627817898

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.144223145572965

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6067226314619205

> <JCHEM_POLAR_SURFACE_AREA>
94.83000000000001

> <JCHEM_REFRACTIVITY>
87.8883

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.63e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3R,6aR,7R,12aR)-6a,7,8-trihydroxy-3-methyl-3,4,5,6,7,12a-hexahydro-2H-tetraphene-1,12-dione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 44 47  0  0  0  0  0  0  0  0999 V2000
    5.4038    0.1893    0.6015 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0391    0.0395   -0.0217 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6828   -1.4249   -0.0197 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2355   -1.6448    0.2374 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8587   -2.8191    0.4827 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2371   -0.5833    0.2211 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6709    0.6582    0.3023 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8648    1.8464   -0.0508 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5471    1.5257   -0.4049 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7292    0.1392   -0.9517 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0827   -0.0158   -2.0453 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2157   -0.8245    0.1194 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9539   -0.5356    1.3475 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4259   -0.3224    2.4682 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4107   -0.4919    1.2642 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2079   -0.6329    2.3828 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5808   -0.5866    2.2691 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1247   -0.3970    1.0165 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3586   -0.2527   -0.1200 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9187   -0.0607   -1.3872 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9765   -0.3030    0.0203 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1704   -0.1452   -1.2166 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7307    0.8046   -2.0746 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0629    0.8653    0.7816 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7087    1.2379    0.6977 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3813   -0.3486    1.5758 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1075   -0.4064   -0.0479 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0768    0.4695   -1.0332 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9930   -1.8271   -1.0151 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2578   -1.9906    0.7337 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9513    2.5765    0.7987 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3572    2.3313   -0.9222 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1659    1.6808    0.5199 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9731    2.2358   -1.1607 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3732    0.8365   -2.4588 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4558   -1.8404   -0.2557 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7047   -0.7779    3.3284 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2117   -0.6973    3.1479 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2019   -0.3609    0.9290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8993   -0.0197   -1.5238 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2074   -1.1267   -1.7752 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6402    0.5219   -3.0191 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0876    0.5455    1.8433 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3781    1.9320    0.6616 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  6
 10 12  1  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  1  0
 19 21  2  0
 21 22  1  0
 22 23  1  0
  7 24  1  0
 24  2  1  0
 12  6  1  0
 21 15  1  0
 22 10  1  0
  1 25  1  0
  1 26  1  0
  1 27  1  0
  2 28  1  6
  3 29  1  0
  3 30  1  0
  8 31  1  0
  8 32  1  0
  9 33  1  0
  9 34  1  0
 11 35  1  0
 12 36  1  6
 16 37  1  0
 17 38  1  0
 18 39  1  0
 20 40  1  0
 22 41  1  6
 23 42  1  0
 24 43  1  0
 24 44  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       5.404   0.189   0.602  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.039   0.040  -0.022  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.683  -1.425  -0.020  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.236  -1.645   0.237  0.00  0.00           C+0
HETATM    5  O   UNK     0       1.859  -2.819   0.483  0.00  0.00           O+0
HETATM    6  C   UNK     0       1.237  -0.583   0.221  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.671   0.658   0.302  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.865   1.846  -0.051  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.547   1.526  -0.405  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.729   0.139  -0.952  0.00  0.00           C+0
HETATM   11  O   UNK     0       0.083  -0.016  -2.045  0.00  0.00           O+0
HETATM   12  C   UNK     0      -0.216  -0.825   0.119  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.954  -0.536   1.347  0.00  0.00           C+0
HETATM   14  O   UNK     0      -0.426  -0.322   2.468  0.00  0.00           O+0
HETATM   15  C   UNK     0      -2.411  -0.492   1.264  0.00  0.00           C+0
HETATM   16  C   UNK     0      -3.208  -0.633   2.383  0.00  0.00           C+0
HETATM   17  C   UNK     0      -4.581  -0.587   2.269  0.00  0.00           C+0
HETATM   18  C   UNK     0      -5.125  -0.397   1.016  0.00  0.00           C+0
HETATM   19  C   UNK     0      -4.359  -0.253  -0.120  0.00  0.00           C+0
HETATM   20  O   UNK     0      -4.919  -0.061  -1.387  0.00  0.00           O+0
HETATM   21  C   UNK     0      -2.977  -0.303   0.020  0.00  0.00           C+0
HETATM   22  C   UNK     0      -2.170  -0.145  -1.217  0.00  0.00           C+0
HETATM   23  O   UNK     0      -2.731   0.805  -2.075  0.00  0.00           O+0
HETATM   24  C   UNK     0       3.063   0.865   0.782  0.00  0.00           C+0
HETATM   25  H   UNK     0       5.709   1.238   0.698  0.00  0.00           H+0
HETATM   26  H   UNK     0       5.381  -0.349   1.576  0.00  0.00           H+0
HETATM   27  H   UNK     0       6.107  -0.406  -0.048  0.00  0.00           H+0
HETATM   28  H   UNK     0       4.077   0.470  -1.033  0.00  0.00           H+0
HETATM   29  H   UNK     0       3.993  -1.827  -1.015  0.00  0.00           H+0
HETATM   30  H   UNK     0       4.258  -1.991   0.734  0.00  0.00           H+0
HETATM   31  H   UNK     0       0.951   2.576   0.799  0.00  0.00           H+0
HETATM   32  H   UNK     0       1.357   2.331  -0.922  0.00  0.00           H+0
HETATM   33  H   UNK     0      -1.166   1.681   0.520  0.00  0.00           H+0
HETATM   34  H   UNK     0      -0.973   2.236  -1.161  0.00  0.00           H+0
HETATM   35  H   UNK     0       0.373   0.837  -2.459  0.00  0.00           H+0
HETATM   36  H   UNK     0      -0.456  -1.840  -0.256  0.00  0.00           H+0
HETATM   37  H   UNK     0      -2.705  -0.778   3.328  0.00  0.00           H+0
HETATM   38  H   UNK     0      -5.212  -0.697   3.148  0.00  0.00           H+0
HETATM   39  H   UNK     0      -6.202  -0.361   0.929  0.00  0.00           H+0
HETATM   40  H   UNK     0      -5.899  -0.020  -1.524  0.00  0.00           H+0
HETATM   41  H   UNK     0      -2.207  -1.127  -1.775  0.00  0.00           H+0
HETATM   42  H   UNK     0      -2.640   0.522  -3.019  0.00  0.00           H+0
HETATM   43  H   UNK     0       3.088   0.546   1.843  0.00  0.00           H+0
HETATM   44  H   UNK     0       3.378   1.932   0.662  0.00  0.00           H+0
CONECT    1    2   25   26   27                                             
CONECT    2    1    3   24   28                                             
CONECT    3    2    4   29   30                                             
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7   12                                                  
CONECT    7    6    8   24                                                  
CONECT    8    7    9   31   32                                             
CONECT    9    8   10   33   34                                             
CONECT   10    9   11   12   22                                             
CONECT   11   10   35                                                       
CONECT   12   10   13    6   36                                             
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   21                                                  
CONECT   16   15   17   37                                                  
CONECT   17   16   18   38                                                  
CONECT   18   17   19   39                                                  
CONECT   19   18   20   21                                                  
CONECT   20   19   40                                                       
CONECT   21   19   22   15                                                  
CONECT   22   21   23   10   41                                             
CONECT   23   22   42                                                       
CONECT   24    7    2   43   44                                             
CONECT   25    1                                                            
CONECT   26    1                                                            
CONECT   27    1                                                            
CONECT   28    2                                                            
CONECT   29    3                                                            
CONECT   30    3                                                            
CONECT   31    8                                                            
CONECT   32    8                                                            
CONECT   33    9                                                            
CONECT   34    9                                                            
CONECT   35   11                                                            
CONECT   36   12                                                            
CONECT   37   16                                                            
CONECT   38   17                                                            
CONECT   39   18                                                            
CONECT   40   20                                                            
CONECT   41   22                                                            
CONECT   42   23                                                            
CONECT   43   24                                                            
CONECT   44   24                                                            
MASTER        0    0    0    0    0    0    0    0   44    0   94    0
END

RDKit          3D

44 47  0  0  0  0  0  0  0  0999 V2000
    5.4038    0.1893    0.6015 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0391    0.0395   -0.0217 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6828   -1.4249   -0.0197 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2355   -1.6448    0.2374 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8587   -2.8191    0.4827 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2371   -0.5833    0.2211 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6709    0.6582    0.3023 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8648    1.8464   -0.0508 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5471    1.5257   -0.4049 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7292    0.1392   -0.9517 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0827   -0.0158   -2.0453 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2157   -0.8245    0.1194 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9539   -0.5356    1.3475 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4259   -0.3224    2.4682 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4107   -0.4919    1.2642 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2079   -0.6329    2.3828 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5808   -0.5866    2.2691 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1247   -0.3970    1.0165 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3586   -0.2527   -0.1200 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9187   -0.0607   -1.3872 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9765   -0.3030    0.0203 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1704   -0.1452   -1.2166 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7307    0.8046   -2.0746 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0629    0.8653    0.7816 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7087    1.2379    0.6977 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3813   -0.3486    1.5758 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1075   -0.4064   -0.0479 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0768    0.4695   -1.0332 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9930   -1.8271   -1.0151 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2578   -1.9906    0.7337 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9513    2.5765    0.7987 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3572    2.3313   -0.9222 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1659    1.6808    0.5199 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9731    2.2358   -1.1607 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3732    0.8365   -2.4588 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4558   -1.8404   -0.2557 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7047   -0.7779    3.3284 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2117   -0.6973    3.1479 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2019   -0.3609    0.9290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8993   -0.0197   -1.5238 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2074   -1.1267   -1.7752 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6402    0.5219   -3.0191 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0876    0.5455    1.8433 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3781    1.9320    0.6616 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  6
 10 12  1  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  1  0
 19 21  2  0
 21 22  1  0
 22 23  1  0
  7 24  1  0
 24  2  1  0
 12  6  1  0
 21 15  1  0
 22 10  1  0
  1 25  1  0
  1 26  1  0
  1 27  1  0
  2 28  1  6
  3 29  1  0
  3 30  1  0
  8 31  1  0
  8 32  1  0
  9 33  1  0
  9 34  1  0
 11 35  1  0
 12 36  1  6
 16 37  1  0
 17 38  1  0
 18 39  1  0
 20 40  1  0
 22 41  1  6
 23 42  1  0
 24 43  1  0
 24 44  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₁₉H₂₀O₅

Average Mass

328.3640 Da

Monoisotopic Mass

328.13107 Da

IUPAC Name

(3R,6aR,7R,12aR)-6a,7,8-trihydroxy-3-methyl-1,2,3,4,5,6,6a,7,12,12a-decahydrotetraphene-1,12-dione

Traditional Name

(3R,6aR,7R,12aR)-6a,7,8-trihydroxy-3-methyl-3,4,5,6,7,12a-hexahydro-2H-tetraphene-1,12-dione

CAS Registry Number

Not Available

SMILES

C[C@H]1CC(=O)C2=C(CC[C@]3(O)[C@H](O)C4=C(C=CC=C4O)C(=O)[C@H]23)C1

InChI Identifier

InChI=1S/C19H20O5/c1-9-7-10-5-6-19(24)16(14(10)13(21)8-9)17(22)11-3-2-4-12(20)15(11)18(19)23/h2-4,9,16,18,20,23-24H,5-8H2,1H3/t9-,16+,18-,19-/m1/s1

InChI Key

CRULJZWXPCYLAC-BXXNDXQRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	18081255

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tetralins. These are polycyclic aromatic compounds containing a tetralin moiety, which consists of a benzene fused to a cyclohexane.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Tetralins

Sub Class

Not Available

Direct Parent

Tetralins

Alternative Parents

Substituents

Tetralin
Aryl ketone
Aryl alkyl ketone
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Cyclohexenone
Tertiary alcohol
1,2-diol
Secondary alcohol
Ketone
Polyol
Organic oxygen compound
Alcohol
Organooxygen compound
Carbonyl group
Hydrocarbon derivative
Organic oxide
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.48	ALOGPS
logP	1.32	ChemAxon
logS	-2.3	ALOGPS
pKa (Strongest Acidic)	9.14	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	94.83 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	87.89 m³·mol⁻¹	ChemAxon
Polarizability	33.6 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA007093

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78440181

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139585094

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Panglimycin C (NP0007460)

MOL for NP0007460 (Panglimycin C)

3D MOL for NP0007460 (Panglimycin C)

3D SDF for NP0007460 (Panglimycin C)

3D-SDF for NP0007460 (Panglimycin C)

PDB for NP0007460 (Panglimycin C)

3D PDB for NP0007460 (Panglimycin C)

SMILES for NP0007460 (Panglimycin C)

INCHI for NP0007460 (Panglimycin C)

Structure for NP0007460 (Panglimycin C)

3D Structure for NP0007460 (Panglimycin C)