NP-MRD: Showing NP-Card for Phomodione (NP0007453)

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Record Information

Version

2.0

Created at

2020-12-09 04:20:00 UTC

Updated at

2021-07-15 16:57:38 UTC

NP-MRD ID

NP0007453

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Phomodione

Provided By

NPAtlas

Description

Phomodione is found in Phoma sp. Phomodione was first documented in 2008 (PMID: 18070629). Based on a literature review very few articles have been published on (2S,7R)-4,10-diacetyl-11-hydroxy-7,13-dimethoxy-2,12-dimethyl-8-oxatricyclo[7.4.0.0²,⁷]Trideca-1(13),9,11-triene-3,5-dione.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118403D          

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M  END

     RDKit          3D

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  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  2  0  0  0  0
  8 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  6  0  0  0
 14 16  1  0  0  0  0
 16 17  2  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  2  0  0  0  0
 18 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  6  0  0  0
 26 27  1  0  0  0  0
 25 28  1  0  0  0  0
 13  3  1  0  0  0  0
 25 14  1  0  0  0  0
 28 12  1  0  0  0  0
  1 29  1  0  0  0  0
  1 30  1  0  0  0  0
  1 31  1  0  0  0  0
  5 32  1  0  0  0  0
  5 33  1  0  0  0  0
  5 34  1  0  0  0  0
  7 35  1  0  0  0  0
 10 36  1  0  0  0  0
 10 37  1  0  0  0  0
 10 38  1  0  0  0  0
 15 39  1  0  0  0  0
 15 40  1  0  0  0  0
 15 41  1  0  0  0  0
 18 42  1  1  0  0  0
 20 43  1  0  0  0  0
 20 44  1  0  0  0  0
 20 45  1  0  0  0  0
 24 46  1  0  0  0  0
 24 47  1  0  0  0  0
 27 48  1  0  0  0  0
 27 49  1  0  0  0  0
 27 50  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0007453

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C(C(=O)C([H])([H])[H])C2=C(C(OC([H])([H])[H])=C1C([H])([H])[H])[C@]1(C(=O)[C@]([H])(C(=O)C([H])([H])[H])C(=O)C([H])([H])[C@@]1(OC([H])([H])[H])O2)C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C20H22O8/c1-8-15(24)13(10(3)22)17-14(16(8)26-5)19(4)18(25)12(9(2)21)11(23)7-20(19,27-6)28-17/h12,24H,7H2,1-6H3/t12-,19+,20-/m1/s1

> <INCHI_KEY>
SBCSGCNJMDGECZ-IWSJWDQHSA-N

> <FORMULA>
C20H22O8

> <MOLECULAR_WEIGHT>
390.388

> <EXACT_MASS>
390.131467668

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
50

> <JCHEM_AVERAGE_POLARIZABILITY>
38.81633467225597

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,4R,7R)-4,10-diacetyl-11-hydroxy-7,13-dimethoxy-2,12-dimethyl-8-oxatricyclo[7.4.0.0^{2,7}]trideca-1(9),10,12-triene-3,5-dione

> <ALOGPS_LOGP>
2.48

> <JCHEM_LOGP>
3.1172968350000003

> <ALOGPS_LOGS>
-2.82

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
9.42470239200226

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.5525719339831214

> <JCHEM_PKA_STRONGEST_BASIC>
-4.161733948554849

> <JCHEM_POLAR_SURFACE_AREA>
116.20000000000002

> <JCHEM_REFRACTIVITY>
97.62389999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.85e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,4R,7R)-4,10-diacetyl-11-hydroxy-7,13-dimethoxy-2,12-dimethyl-8-oxatricyclo[7.4.0.0^{2,7}]trideca-1(9),10,12-triene-3,5-dione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 50 52  0  0  0  0  0  0  0  0999 V2000
   -0.3072    3.3719   -1.4425 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1195    2.2779   -1.5816 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4424    1.2959   -0.6717 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5037    1.4436    0.1676 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2956    2.6944    0.0685 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8903    0.4666    1.1289 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9721    0.7555    1.8964 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1855   -0.7006    1.2515 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4712   -1.7739    2.1860 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5309   -1.8612    3.1743 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6854   -2.8018    2.1483 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0894   -0.8393    0.3757 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7361    0.1179   -0.5438 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4534   -0.3732   -1.2946 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0150   -0.6702   -2.7064 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5744    0.5836   -1.3198 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8333    1.1604   -2.3570 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4184    0.8859   -0.1334 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.7897    1.3044   -0.5179 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7327    1.6311    0.5918 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1897    1.3976   -1.6565 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3788   -0.2947    0.7400 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5602   -0.1839    1.9196 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1130   -1.6001    0.1301 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8174   -1.6723   -0.6318 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8805   -2.7433   -1.5093 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1454   -3.9333   -0.8428 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2130   -1.9217    0.2927 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3339    3.4538   -2.3647 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8262    4.3511   -1.3911 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3997    3.3052   -0.5935 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0109    3.4247    0.8732 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3578    2.4296    0.3003 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2820    3.1192   -0.9331 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4208    0.3020    2.5789 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5281   -1.9265    2.6909 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4083   -2.8506    3.7293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4089   -1.1210    3.9631 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0716   -0.9684   -2.7211 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6107   -1.5108   -3.1344 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0889    0.2138   -3.3678 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9135    1.7417    0.3949 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1491    2.0842    1.4214 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1919    0.7057    0.9953 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5372    2.3257    0.2776 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9581   -1.8462   -0.5456 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0326   -2.3571    0.9612 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0921   -3.9479   -0.2945 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1995   -4.7551   -1.5917 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3478   -4.1904   -0.1107 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  4  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 10  1  0
  9 11  2  0
  8 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  6
 14 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 19 21  2  0
 18 22  1  0
 22 23  2  0
 22 24  1  0
 24 25  1  0
 25 26  1  6
 26 27  1  0
 25 28  1  0
 13  3  1  0
 25 14  1  0
 28 12  1  0
  1 29  1  0
  1 30  1  0
  1 31  1  0
  5 32  1  0
  5 33  1  0
  5 34  1  0
  7 35  1  0
 10 36  1  0
 10 37  1  0
 10 38  1  0
 15 39  1  0
 15 40  1  0
 15 41  1  0
 18 42  1  1
 20 43  1  0
 20 44  1  0
 20 45  1  0
 24 46  1  0
 24 47  1  0
 27 48  1  0
 27 49  1  0
 27 50  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -0.307   3.372  -1.442  0.00  0.00           C+0
HETATM    2  O   UNK     0      -1.119   2.278  -1.582  0.00  0.00           O+0
HETATM    3  C   UNK     0      -1.442   1.296  -0.672  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.504   1.444   0.168  0.00  0.00           C+0
HETATM    5  C   UNK     0      -3.296   2.694   0.069  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.890   0.467   1.129  0.00  0.00           C+0
HETATM    7  O   UNK     0      -3.972   0.756   1.896  0.00  0.00           O+0
HETATM    8  C   UNK     0      -2.186  -0.701   1.252  0.00  0.00           C+0
HETATM    9  C   UNK     0      -2.471  -1.774   2.186  0.00  0.00           C+0
HETATM   10  C   UNK     0      -3.531  -1.861   3.174  0.00  0.00           C+0
HETATM   11  O   UNK     0      -1.685  -2.802   2.148  0.00  0.00           O+0
HETATM   12  C   UNK     0      -1.089  -0.839   0.376  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.736   0.118  -0.544  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.453  -0.373  -1.295  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.015  -0.670  -2.706  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.574   0.584  -1.320  0.00  0.00           C+0
HETATM   17  O   UNK     0       1.833   1.160  -2.357  0.00  0.00           O+0
HETATM   18  C   UNK     0       2.418   0.886  -0.133  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.790   1.304  -0.518  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.733   1.631   0.592  0.00  0.00           C+0
HETATM   21  O   UNK     0       4.190   1.398  -1.657  0.00  0.00           O+0
HETATM   22  C   UNK     0       2.379  -0.295   0.740  0.00  0.00           C+0
HETATM   23  O   UNK     0       2.560  -0.184   1.920  0.00  0.00           O+0
HETATM   24  C   UNK     0       2.113  -1.600   0.130  0.00  0.00           C+0
HETATM   25  C   UNK     0       0.817  -1.672  -0.632  0.00  0.00           C+0
HETATM   26  O   UNK     0       0.881  -2.743  -1.509  0.00  0.00           O+0
HETATM   27  C   UNK     0       1.145  -3.933  -0.843  0.00  0.00           C+0
HETATM   28  O   UNK     0      -0.213  -1.922   0.293  0.00  0.00           O+0
HETATM   29  H   UNK     0       0.334   3.454  -2.365  0.00  0.00           H+0
HETATM   30  H   UNK     0      -0.826   4.351  -1.391  0.00  0.00           H+0
HETATM   31  H   UNK     0       0.400   3.305  -0.594  0.00  0.00           H+0
HETATM   32  H   UNK     0      -3.011   3.425   0.873  0.00  0.00           H+0
HETATM   33  H   UNK     0      -4.358   2.430   0.300  0.00  0.00           H+0
HETATM   34  H   UNK     0      -3.282   3.119  -0.933  0.00  0.00           H+0
HETATM   35  H   UNK     0      -4.421   0.302   2.579  0.00  0.00           H+0
HETATM   36  H   UNK     0      -4.528  -1.927   2.691  0.00  0.00           H+0
HETATM   37  H   UNK     0      -3.408  -2.851   3.729  0.00  0.00           H+0
HETATM   38  H   UNK     0      -3.409  -1.121   3.963  0.00  0.00           H+0
HETATM   39  H   UNK     0      -1.072  -0.968  -2.721  0.00  0.00           H+0
HETATM   40  H   UNK     0       0.611  -1.511  -3.134  0.00  0.00           H+0
HETATM   41  H   UNK     0       0.089   0.214  -3.368  0.00  0.00           H+0
HETATM   42  H   UNK     0       1.914   1.742   0.395  0.00  0.00           H+0
HETATM   43  H   UNK     0       4.149   2.084   1.421  0.00  0.00           H+0
HETATM   44  H   UNK     0       5.192   0.706   0.995  0.00  0.00           H+0
HETATM   45  H   UNK     0       5.537   2.326   0.278  0.00  0.00           H+0
HETATM   46  H   UNK     0       2.958  -1.846  -0.546  0.00  0.00           H+0
HETATM   47  H   UNK     0       2.033  -2.357   0.961  0.00  0.00           H+0
HETATM   48  H   UNK     0       2.092  -3.948  -0.295  0.00  0.00           H+0
HETATM   49  H   UNK     0       1.200  -4.755  -1.592  0.00  0.00           H+0
HETATM   50  H   UNK     0       0.348  -4.190  -0.111  0.00  0.00           H+0
CONECT    1    2   29   30   31                                             
CONECT    2    1    3                                                       
CONECT    3    2    4   13                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4   32   33   34                                             
CONECT    6    4    7    8                                                  
CONECT    7    6   35                                                       
CONECT    8    6    9   12                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9   36   37   38                                             
CONECT   11    9                                                            
CONECT   12    8   13   28                                                  
CONECT   13   12   14    3                                                  
CONECT   14   13   15   16   25                                             
CONECT   15   14   39   40   41                                             
CONECT   16   14   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19   22   42                                             
CONECT   19   18   20   21                                                  
CONECT   20   19   43   44   45                                             
CONECT   21   19                                                            
CONECT   22   18   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25   46   47                                             
CONECT   25   24   26   28   14                                             
CONECT   26   25   27                                                       
CONECT   27   26   48   49   50                                             
CONECT   28   25   12                                                       
CONECT   29    1                                                            
CONECT   30    1                                                            
CONECT   31    1                                                            
CONECT   32    5                                                            
CONECT   33    5                                                            
CONECT   34    5                                                            
CONECT   35    7                                                            
CONECT   36   10                                                            
CONECT   37   10                                                            
CONECT   38   10                                                            
CONECT   39   15                                                            
CONECT   40   15                                                            
CONECT   41   15                                                            
CONECT   42   18                                                            
CONECT   43   20                                                            
CONECT   44   20                                                            
CONECT   45   20                                                            
CONECT   46   24                                                            
CONECT   47   24                                                            
CONECT   48   27                                                            
CONECT   49   27                                                            
CONECT   50   27                                                            
MASTER        0    0    0    0    0    0    0    0   50    0  104    0
END

RDKit          3D

50 52  0  0  0  0  0  0  0  0999 V2000
   -0.3072    3.3719   -1.4425 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1195    2.2779   -1.5816 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4424    1.2959   -0.6717 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5037    1.4436    0.1676 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2956    2.6944    0.0685 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8903    0.4666    1.1289 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9721    0.7555    1.8964 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1855   -0.7006    1.2515 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4712   -1.7739    2.1860 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5309   -1.8612    3.1743 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6854   -2.8018    2.1483 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0894   -0.8393    0.3757 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7361    0.1179   -0.5438 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4534   -0.3732   -1.2946 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0150   -0.6702   -2.7064 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5744    0.5836   -1.3198 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8333    1.1604   -2.3570 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4184    0.8859   -0.1334 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.7897    1.3044   -0.5179 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7327    1.6311    0.5918 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1897    1.3976   -1.6565 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3788   -0.2947    0.7400 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5602   -0.1839    1.9196 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1130   -1.6001    0.1301 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8174   -1.6723   -0.6318 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8805   -2.7433   -1.5093 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1454   -3.9333   -0.8428 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2130   -1.9217    0.2927 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3339    3.4538   -2.3647 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8262    4.3511   -1.3911 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3997    3.3052   -0.5935 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0109    3.4247    0.8732 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3578    2.4296    0.3003 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2820    3.1192   -0.9331 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4208    0.3020    2.5789 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5281   -1.9265    2.6909 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4083   -2.8506    3.7293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4089   -1.1210    3.9631 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0716   -0.9684   -2.7211 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6107   -1.5108   -3.1344 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0889    0.2138   -3.3678 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9135    1.7417    0.3949 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1491    2.0842    1.4214 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1919    0.7057    0.9953 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5372    2.3257    0.2776 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9581   -1.8462   -0.5456 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0326   -2.3571    0.9612 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0921   -3.9479   -0.2945 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1995   -4.7551   -1.5917 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3478   -4.1904   -0.1107 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  4  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 10  1  0
  9 11  2  0
  8 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  6
 14 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 19 21  2  0
 18 22  1  0
 22 23  2  0
 22 24  1  0
 24 25  1  0
 25 26  1  6
 26 27  1  0
 25 28  1  0
 13  3  1  0
 25 14  1  0
 28 12  1  0
  1 29  1  0
  1 30  1  0
  1 31  1  0
  5 32  1  0
  5 33  1  0
  5 34  1  0
  7 35  1  0
 10 36  1  0
 10 37  1  0
 10 38  1  0
 15 39  1  0
 15 40  1  0
 15 41  1  0
 18 42  1  1
 20 43  1  0
 20 44  1  0
 20 45  1  0
 24 46  1  0
 24 47  1  0
 27 48  1  0
 27 49  1  0
 27 50  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₀H₂₂O₈

Average Mass

390.3880 Da

Monoisotopic Mass

390.13147 Da

IUPAC Name

(2S,4R,7R)-4,10-diacetyl-11-hydroxy-7,13-dimethoxy-2,12-dimethyl-8-oxatricyclo[7.4.0.0^{2,7}]trideca-1(9),10,12-triene-3,5-dione

Traditional Name

(2S,4R,7R)-4,10-diacetyl-11-hydroxy-7,13-dimethoxy-2,12-dimethyl-8-oxatricyclo[7.4.0.0^{2,7}]trideca-1(9),10,12-triene-3,5-dione

CAS Registry Number

Not Available

SMILES

COC1=C2C(O[C@@]3(CC(=O)C(C(C)=O)C(=O)[C@]23C)OC)=C(C(C)=O)C(O)=C1C

InChI Identifier

InChI=1S/C20H22O8/c1-8-15(24)13(10(3)22)17-14(16(8)26-5)19(4)18(25)12(9(2)21)11(23)7-20(19,27-6)28-17/h12,24H,7H2,1-6H3/t12?,19-,20+/m0/s1

InChI Key

SBCSGCNJMDGECZ-IWSJWDQHSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Phoma sp.	NPAtlas	18070629

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.48	ALOGPS
logP	3.12	ChemAxon
logS	-2.8	ALOGPS
pKa (Strongest Acidic)	3.55	ChemAxon
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	116.2 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	97.62 m³·mol⁻¹	ChemAxon
Polarizability	38.82 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA000246

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78442440

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139583154

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Hoffman AM, Mayer SG, Strobel GA, Hess WM, Sovocool GW, Grange AH, Harper JK, Arif AM, Grant DM, Kelley-Swift EG: Purification, identification and activity of phomodione, a furandione from an endophytic Phoma species. Phytochemistry. 2008 Feb;69(4):1049-56. doi: 10.1016/j.phytochem.2007.10.031. Epub 2007 Dec 19. [PubMed:18070629 ]

Showing NP-Card for Phomodione (NP0007453)

MOL for NP0007453 (Phomodione)

3D MOL for NP0007453 (Phomodione)

3D SDF for NP0007453 (Phomodione)

3D-SDF for NP0007453 (Phomodione)

PDB for NP0007453 (Phomodione)

3D PDB for NP0007453 (Phomodione)

SMILES for NP0007453 (Phomodione)

INCHI for NP0007453 (Phomodione)

Structure for NP0007453 (Phomodione)

3D Structure for NP0007453 (Phomodione)