NP-MRD: Showing NP-Card for Xylarinic acid A (NP0007444)

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Record Information

Version

2.0

Created at

2020-12-09 04:19:39 UTC

Updated at

2021-07-15 16:57:36 UTC

NP-MRD ID

NP0007444

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Xylarinic acid A

Provided By

NPAtlas

Description

Xylarinic acid A, also known as xylarinate a, belongs to the class of organic compounds known as acyclic monoterpenoids. These are monoterpenes that do not contain a cycle. Xylarinic acid A is found in Xylaria polymorpha. Xylarinic acid A was first documented in 2007 (PMID: 18057699). Based on a literature review very few articles have been published on Xylarinic acid A.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118403D          

 37 36  0  0  0  0            999 V2000
   -4.2270    1.4128   -0.9819 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1580    1.4391    0.0872 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.2631    0.1870   -0.0496 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.6775    0.2902   -1.4299 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3049    0.2647    1.0732 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3025   -0.8102    1.2312 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9037   -2.1863    1.4237 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7104   -0.7537    0.1599 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9777   -0.3706    0.4184 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2463   -0.0246    1.8268 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9522   -0.3258   -0.6586 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2115    0.0286   -0.5335 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1154    0.0366   -1.7043 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3174    0.3713   -1.6035 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6260   -0.3328   -2.9384 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2125    1.7068   -0.5455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9753    2.1044   -1.8326 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3072    0.3723   -1.3357 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5736    2.3591   -0.0358 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6034    1.4723    1.1071 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9645   -0.6694    0.0157 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6252   -0.7332   -1.8531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4146    0.8138   -2.1163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7678    0.8813   -1.4951 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9280    0.4016    2.0086 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7860    1.2660    0.9840 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1924   -0.6028    2.2388 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9059   -2.7445    0.4461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2849   -2.8010    2.1106 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9169   -2.1520    1.8363 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5115   -1.0143   -0.8642 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1771   -0.9117    2.5115 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2882    0.3233    1.9288 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6216    0.8263    2.1822 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6362   -0.6021   -1.6486 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5737    0.3138    0.4425 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9447    0.1640   -3.4729 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
  1 16  1  0  0  0  0
  1 17  1  0  0  0  0
  1 18  1  0  0  0  0
  2 19  1  0  0  0  0
  2 20  1  0  0  0  0
  3 21  1  6  0  0  0
  4 22  1  0  0  0  0
  4 23  1  0  0  0  0
  4 24  1  0  0  0  0
  5 25  1  0  0  0  0
  5 26  1  0  0  0  0
  6 27  1  1  0  0  0
  7 28  1  0  0  0  0
  7 29  1  0  0  0  0
  7 30  1  0  0  0  0
  8 31  1  0  0  0  0
 10 32  1  0  0  0  0
 10 33  1  0  0  0  0
 10 34  1  0  0  0  0
 11 35  1  0  0  0  0
 12 36  1  0  0  0  0
 15 37  1  0  0  0  0
M  END

     RDKit          3D

 37 36  0  0  0  0  0  0  0  0999 V2000
   -4.2270    1.4128   -0.9819 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1580    1.4391    0.0872 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2631    0.1870   -0.0496 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.6775    0.2902   -1.4299 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3049    0.2647    1.0732 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3025   -0.8102    1.2312 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9037   -2.1863    1.4237 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7104   -0.7537    0.1599 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9777   -0.3706    0.4184 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2463   -0.0246    1.8268 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9522   -0.3258   -0.6586 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2115    0.0286   -0.5335 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1154    0.0366   -1.7043 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3174    0.3713   -1.6035 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6260   -0.3328   -2.9384 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2125    1.7068   -0.5455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9753    2.1044   -1.8326 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3072    0.3723   -1.3357 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5736    2.3591   -0.0358 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6034    1.4723    1.1071 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9645   -0.6694    0.0157 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6252   -0.7332   -1.8531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4146    0.8138   -2.1163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7678    0.8813   -1.4951 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9280    0.4016    2.0086 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7860    1.2660    0.9840 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1924   -0.6028    2.2388 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9059   -2.7445    0.4461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2849   -2.8010    2.1106 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9169   -2.1520    1.8363 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5115   -1.0143   -0.8642 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1771   -0.9117    2.5115 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2882    0.3233    1.9288 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6216    0.8263    2.1822 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6362   -0.6021   -1.6486 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5737    0.3138    0.4425 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9447    0.1640   -3.4729 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  2  0
  9 10  1  0
  9 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
  1 16  1  0
  1 17  1  0
  1 18  1  0
  2 19  1  0
  2 20  1  0
  3 21  1  6
  4 22  1  0
  4 23  1  0
  4 24  1  0
  5 25  1  0
  5 26  1  0
  6 27  1  1
  7 28  1  0
  7 29  1  0
  7 30  1  0
  8 31  1  0
 10 32  1  0
 10 33  1  0
 10 34  1  0
 11 35  1  0
 12 36  1  0
 15 37  1  0
M  END


  Mrv1652306242118403D          

 37 36  0  0  0  0            999 V2000
   -4.2270    1.4128   -0.9819 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1580    1.4391    0.0872 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.2631    0.1870   -0.0496 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.6775    0.2902   -1.4299 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3049    0.2647    1.0732 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3025   -0.8102    1.2312 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9037   -2.1863    1.4237 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7104   -0.7537    0.1599 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9777   -0.3706    0.4184 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2463   -0.0246    1.8268 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9522   -0.3258   -0.6586 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2115    0.0286   -0.5335 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1154    0.0366   -1.7043 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3174    0.3713   -1.6035 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6260   -0.3328   -2.9384 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2125    1.7068   -0.5455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9753    2.1044   -1.8326 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3072    0.3723   -1.3357 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5736    2.3591   -0.0358 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6034    1.4723    1.1071 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9645   -0.6694    0.0157 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6252   -0.7332   -1.8531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4146    0.8138   -2.1163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7678    0.8813   -1.4951 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9280    0.4016    2.0086 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7860    1.2660    0.9840 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1924   -0.6028    2.2388 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9059   -2.7445    0.4461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2849   -2.8010    2.1106 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9169   -2.1520    1.8363 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5115   -1.0143   -0.8642 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1771   -0.9117    2.5115 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2882    0.3233    1.9288 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6216    0.8263    2.1822 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6362   -0.6021   -1.6486 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5737    0.3138    0.4425 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9447    0.1640   -3.4729 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
  1 16  1  0  0  0  0
  1 17  1  0  0  0  0
  1 18  1  0  0  0  0
  2 19  1  0  0  0  0
  2 20  1  0  0  0  0
  3 21  1  6  0  0  0
  4 22  1  0  0  0  0
  4 23  1  0  0  0  0
  4 24  1  0  0  0  0
  5 25  1  0  0  0  0
  5 26  1  0  0  0  0
  6 27  1  1  0  0  0
  7 28  1  0  0  0  0
  7 29  1  0  0  0  0
  7 30  1  0  0  0  0
  8 31  1  0  0  0  0
 10 32  1  0  0  0  0
 10 33  1  0  0  0  0
 10 34  1  0  0  0  0
 11 35  1  0  0  0  0
 12 36  1  0  0  0  0
 15 37  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0007444

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)C(\[H])=C(/[H])\C(=C(/[H])[C@]([H])(C([H])([H])[H])C([H])([H])[C@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])[H])\C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C13H22O2/c1-5-10(2)8-12(4)9-11(3)6-7-13(14)15/h6-7,9-10,12H,5,8H2,1-4H3,(H,14,15)/b7-6+,11-9+/t10-,12-/m1/s1

> <INCHI_KEY>
OILLDIIQDQVGSY-RXUIJTJXSA-N

> <FORMULA>
C13H22O2

> <MOLECULAR_WEIGHT>
210.317

> <EXACT_MASS>
210.161979948

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
37

> <JCHEM_AVERAGE_POLARIZABILITY>
25.485235941711203

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2E,4E,6R,8R)-4,6,8-trimethyldeca-2,4-dienoic acid

> <ALOGPS_LOGP>
4.33

> <JCHEM_LOGP>
4.042472085

> <ALOGPS_LOGS>
-3.84

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.1012486728509945

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
65.06670000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.06e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2E,4E,6R,8R)-4,6,8-trimethyldeca-2,4-dienoic acid

> <JCHEM_VEBER_RULE>
1

$$$$

     RDKit          3D

 37 36  0  0  0  0  0  0  0  0999 V2000
   -4.2270    1.4128   -0.9819 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1580    1.4391    0.0872 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2631    0.1870   -0.0496 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.6775    0.2902   -1.4299 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3049    0.2647    1.0732 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3025   -0.8102    1.2312 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9037   -2.1863    1.4237 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7104   -0.7537    0.1599 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9777   -0.3706    0.4184 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2463   -0.0246    1.8268 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9522   -0.3258   -0.6586 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2115    0.0286   -0.5335 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1154    0.0366   -1.7043 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3174    0.3713   -1.6035 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6260   -0.3328   -2.9384 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2125    1.7068   -0.5455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9753    2.1044   -1.8326 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3072    0.3723   -1.3357 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5736    2.3591   -0.0358 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6034    1.4723    1.1071 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9645   -0.6694    0.0157 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6252   -0.7332   -1.8531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4146    0.8138   -2.1163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7678    0.8813   -1.4951 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9280    0.4016    2.0086 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7860    1.2660    0.9840 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1924   -0.6028    2.2388 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9059   -2.7445    0.4461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2849   -2.8010    2.1106 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9169   -2.1520    1.8363 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5115   -1.0143   -0.8642 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1771   -0.9117    2.5115 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2882    0.3233    1.9288 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6216    0.8263    2.1822 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6362   -0.6021   -1.6486 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5737    0.3138    0.4425 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9447    0.1640   -3.4729 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  2  0
  9 10  1  0
  9 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
  1 16  1  0
  1 17  1  0
  1 18  1  0
  2 19  1  0
  2 20  1  0
  3 21  1  6
  4 22  1  0
  4 23  1  0
  4 24  1  0
  5 25  1  0
  5 26  1  0
  6 27  1  1
  7 28  1  0
  7 29  1  0
  7 30  1  0
  8 31  1  0
 10 32  1  0
 10 33  1  0
 10 34  1  0
 11 35  1  0
 12 36  1  0
 15 37  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -4.227   1.413  -0.982  0.00  0.00           C+0
HETATM    2  C   UNK     0      -3.158   1.439   0.087  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.263   0.187  -0.050  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.678   0.290  -1.430  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.305   0.265   1.073  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.303  -0.810   1.231  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.904  -2.186   1.424  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.710  -0.754   0.160  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.978  -0.371   0.418  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.246  -0.025   1.827  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.952  -0.326  -0.659  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.212   0.029  -0.534  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.115   0.037  -1.704  0.00  0.00           C+0
HETATM   14  O   UNK     0       6.317   0.371  -1.603  0.00  0.00           O+0
HETATM   15  O   UNK     0       4.626  -0.333  -2.938  0.00  0.00           O+0
HETATM   16  H   UNK     0      -5.213   1.707  -0.546  0.00  0.00           H+0
HETATM   17  H   UNK     0      -3.975   2.104  -1.833  0.00  0.00           H+0
HETATM   18  H   UNK     0      -4.307   0.372  -1.336  0.00  0.00           H+0
HETATM   19  H   UNK     0      -2.574   2.359  -0.036  0.00  0.00           H+0
HETATM   20  H   UNK     0      -3.603   1.472   1.107  0.00  0.00           H+0
HETATM   21  H   UNK     0      -2.965  -0.669   0.016  0.00  0.00           H+0
HETATM   22  H   UNK     0      -1.625  -0.733  -1.853  0.00  0.00           H+0
HETATM   23  H   UNK     0      -2.415   0.814  -2.116  0.00  0.00           H+0
HETATM   24  H   UNK     0      -0.768   0.881  -1.495  0.00  0.00           H+0
HETATM   25  H   UNK     0      -1.928   0.402   2.009  0.00  0.00           H+0
HETATM   26  H   UNK     0      -0.786   1.266   0.984  0.00  0.00           H+0
HETATM   27  H   UNK     0       0.192  -0.603   2.239  0.00  0.00           H+0
HETATM   28  H   UNK     0      -0.906  -2.744   0.446  0.00  0.00           H+0
HETATM   29  H   UNK     0      -0.285  -2.801   2.111  0.00  0.00           H+0
HETATM   30  H   UNK     0      -1.917  -2.152   1.836  0.00  0.00           H+0
HETATM   31  H   UNK     0       0.511  -1.014  -0.864  0.00  0.00           H+0
HETATM   32  H   UNK     0       2.177  -0.912   2.511  0.00  0.00           H+0
HETATM   33  H   UNK     0       3.288   0.323   1.929  0.00  0.00           H+0
HETATM   34  H   UNK     0       1.622   0.826   2.182  0.00  0.00           H+0
HETATM   35  H   UNK     0       2.636  -0.602  -1.649  0.00  0.00           H+0
HETATM   36  H   UNK     0       4.574   0.314   0.443  0.00  0.00           H+0
HETATM   37  H   UNK     0       3.945   0.164  -3.473  0.00  0.00           H+0
CONECT    1    2   16   17   18                                             
CONECT    2    1    3   19   20                                             
CONECT    3    2    4    5   21                                             
CONECT    4    3   22   23   24                                             
CONECT    5    3    6   25   26                                             
CONECT    6    5    7    8   27                                             
CONECT    7    6   28   29   30                                             
CONECT    8    6    9   31                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9   32   33   34                                             
CONECT   11    9   12   35                                                  
CONECT   12   11   13   36                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   37                                                       
CONECT   16    1                                                            
CONECT   17    1                                                            
CONECT   18    1                                                            
CONECT   19    2                                                            
CONECT   20    2                                                            
CONECT   21    3                                                            
CONECT   22    4                                                            
CONECT   23    4                                                            
CONECT   24    4                                                            
CONECT   25    5                                                            
CONECT   26    5                                                            
CONECT   27    6                                                            
CONECT   28    7                                                            
CONECT   29    7                                                            
CONECT   30    7                                                            
CONECT   31    8                                                            
CONECT   32   10                                                            
CONECT   33   10                                                            
CONECT   34   10                                                            
CONECT   35   11                                                            
CONECT   36   12                                                            
CONECT   37   15                                                            
MASTER        0    0    0    0    0    0    0    0   37    0   72    0
END

RDKit          3D

37 36  0  0  0  0  0  0  0  0999 V2000
   -4.2270    1.4128   -0.9819 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1580    1.4391    0.0872 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2631    0.1870   -0.0496 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.6775    0.2902   -1.4299 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3049    0.2647    1.0732 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3025   -0.8102    1.2312 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9037   -2.1863    1.4237 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7104   -0.7537    0.1599 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9777   -0.3706    0.4184 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2463   -0.0246    1.8268 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9522   -0.3258   -0.6586 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2115    0.0286   -0.5335 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1154    0.0366   -1.7043 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3174    0.3713   -1.6035 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6260   -0.3328   -2.9384 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2125    1.7068   -0.5455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9753    2.1044   -1.8326 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3072    0.3723   -1.3357 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5736    2.3591   -0.0358 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6034    1.4723    1.1071 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9645   -0.6694    0.0157 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6252   -0.7332   -1.8531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4146    0.8138   -2.1163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7678    0.8813   -1.4951 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9280    0.4016    2.0086 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7860    1.2660    0.9840 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1924   -0.6028    2.2388 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9059   -2.7445    0.4461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2849   -2.8010    2.1106 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9169   -2.1520    1.8363 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5115   -1.0143   -0.8642 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1771   -0.9117    2.5115 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2882    0.3233    1.9288 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6216    0.8263    2.1822 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6362   -0.6021   -1.6486 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5737    0.3138    0.4425 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9447    0.1640   -3.4729 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  2  0
  9 10  1  0
  9 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
  1 16  1  0
  1 17  1  0
  1 18  1  0
  2 19  1  0
  2 20  1  0
  3 21  1  6
  4 22  1  0
  4 23  1  0
  4 24  1  0
  5 25  1  0
  5 26  1  0
  6 27  1  1
  7 28  1  0
  7 29  1  0
  7 30  1  0
  8 31  1  0
 10 32  1  0
 10 33  1  0
 10 34  1  0
 11 35  1  0
 12 36  1  0
 15 37  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
Xylarinate a	Generator
4,6,8-Trimethyl-2,4-decadienoic acid	MeSH
(2E,4E)-4,6,8-Trimethyldeca-2,4-dienoate	Generator

Chemical Formula

C₁₃H₂₂O₂

Average Mass

210.3170 Da

Monoisotopic Mass

210.16198 Da

IUPAC Name

(2E,4E,6R,8R)-4,6,8-trimethyldeca-2,4-dienoic acid

Traditional Name

(2E,4E,6R,8R)-4,6,8-trimethyldeca-2,4-dienoic acid

CAS Registry Number

Not Available

SMILES

CCC(C)CC(C)\C=C(/C)\C=C\C(O)=O

InChI Identifier

InChI=1S/C13H22O2/c1-5-10(2)8-12(4)9-11(3)6-7-13(14)15/h6-7,9-10,12H,5,8H2,1-4H3,(H,14,15)/b7-6+,11-9+

InChI Key

OILLDIIQDQVGSY-RXUIJTJXSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Xylaria polymorpha	NPAtlas	18057699

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as acyclic monoterpenoids. These are monoterpenes that do not contain a cycle.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Monoterpenoids

Direct Parent

Acyclic monoterpenoids

Alternative Parents

Substituents

Acyclic monoterpenoid
Medium-chain fatty acid
Branched fatty acid
Methyl-branched fatty acid
Unsaturated fatty acid
Fatty acyl
Fatty acid
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organooxygen compound
Carbonyl group
Hydrocarbon derivative
Organic oxide
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.33	ALOGPS
logP	4.04	ChemAxon
logS	-3.8	ALOGPS
pKa (Strongest Acidic)	5.1	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.3 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	65.07 m³·mol⁻¹	ChemAxon
Polarizability	25.49 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA005923

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

21378266

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

24740398

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Jang YW, Lee IK, Kim YS, Lee S, Lee HJ, Yu SH, Yun BS: Xylarinic acids A and B, new antifungal polypropionates from the fruiting body of Xylaria polymorpha. J Antibiot (Tokyo). 2007 Nov;60(11):696-9. doi: 10.1038/ja.2007.89. [PubMed:18057699 ]

Showing NP-Card for Xylarinic acid A (NP0007444)

MOL for NP0007444 (Xylarinic acid A)

3D MOL for NP0007444 (Xylarinic acid A)

3D SDF for NP0007444 (Xylarinic acid A)

3D-SDF for NP0007444 (Xylarinic acid A)

PDB for NP0007444 (Xylarinic acid A)

3D PDB for NP0007444 (Xylarinic acid A)

SMILES for NP0007444 (Xylarinic acid A)

INCHI for NP0007444 (Xylarinic acid A)

Structure for NP0007444 (Xylarinic acid A)

3D Structure for NP0007444 (Xylarinic acid A)