Np mrd loader

Record Information
Version2.0
Created at2020-12-09 04:19:09 UTC
Updated at2021-07-15 16:57:34 UTC
NP-MRD IDNP0007432
Secondary Accession NumbersNone
Natural Product Identification
Common NameSerinocyclin B
Provided ByNPAtlasNPAtlas Logo
Description(3'S,6'R,13'R,16'S,23'R,24'aS)-6'-(4-aminobutyl)-1',4',7',11',14',17',23'-heptahydroxy-3',13',16'-tris(hydroxymethyl)-6',9',10',13',16',20',22',23',24',24'a-decahydro-3'H-spiro[cyclopropane-1,19'-pyrrolo[2,1-i]1,4,7,10,13,16,19-heptaazacyclodocosane]-20'-one belongs to the class of organic compounds known as hybrid peptides. Hybrid peptides are compounds containing at least two different types of amino acids (alpha, beta, gamma, delta) linked to each other through a peptide bond. Serinocyclin B is found in Metarhizium acridum and Metarhizium anisopliae. Serinocyclin B was first documented in 2007 (PMID: 18044842). Based on a literature review very few articles have been published on (3'S,6'R,13'R,16'S,23'R,24'aS)-6'-(4-aminobutyl)-1',4',7',11',14',17',23'-heptahydroxy-3',13',16'-tris(hydroxymethyl)-6',9',10',13',16',20',22',23',24',24'a-decahydro-3'H-spiro[cyclopropane-1,19'-pyrrolo[2,1-i]1,4,7,10,13,16,19-heptaazacyclodocosane]-20'-one.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC27H44N8O11
Average Mass656.6940 Da
Monoisotopic Mass656.31295 Da
IUPAC Name(3'S,6'R,13'R,16'S,23'R,24'aS)-6'-(4-aminobutyl)-23'-hydroxy-3',13',16'-tris(hydroxymethyl)-docosahydro-1'H-spiro[cyclopropane-1,19'-pyrrolo[2,1-i]1,4,7,10,13,16,19-heptaazacyclodocosane]-1',4',7',11',14',17',20'-heptone
Traditional Name(3'S,6'R,13'R,16'S,23'R,24'aS)-6'-(4-aminobutyl)-23'-hydroxy-3',13',16'-tris(hydroxymethyl)-hexadecahydrospiro[cyclopropane-1,19'-pyrrolo[2,1-i]1,4,7,10,13,16,19-heptaazacyclodocosane]-1',4',7',11',14',17',20'-heptone
CAS Registry NumberNot Available
SMILES
NCCCC[C@H]1NC(=O)[C@H](CO)NC(=O)[C@@H]2C[C@@H](O)CN2C(=O)C2(CC2)NC(=O)[C@H](CO)NC(=O)[C@@H](CO)NC(=O)CCNC1=O
InChI Identifier
InChI=1S/C27H44N8O11/c28-7-2-1-3-15-21(41)29-8-4-20(40)30-16(11-36)22(42)32-18(13-38)24(44)34-27(5-6-27)26(46)35-10-14(39)9-19(35)25(45)33-17(12-37)23(43)31-15/h14-19,36-39H,1-13,28H2,(H,29,41)(H,30,40)(H,31,43)(H,32,42)(H,33,45)(H,34,44)/t14-,15-,16-,17+,18+,19+/m1/s1
InChI KeyGWGAXRUGGRQBFQ-VWQYPGANSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Metarhizium acridumLOTUS Database
Metarhizium anisopliaeNPAtlas
Chemical Taxonomy
Description Belongs to the class of organic compounds known as hybrid peptides. Hybrid peptides are compounds containing at least two different types of amino acids (alpha, beta, gamma, delta) linked to each other through a peptide bond.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassPeptidomimetics
Sub ClassHybrid peptides
Direct ParentHybrid peptides
Alternative Parents
Substituents
  • Cyclic hybrid peptide
  • Alpha-oligopeptide
  • Macrolactam
  • Beta amino acid or derivatives
  • Alpha-amino acid or derivatives
  • Tertiary carboxylic acid amide
  • Pyrrolidine
  • Amino acid or derivatives
  • Carboxamide group
  • Lactam
  • Secondary carboxylic acid amide
  • Secondary alcohol
  • Carboxylic acid derivative
  • Azacycle
  • Organoheterocyclic compound
  • Organonitrogen compound
  • Primary aliphatic amine
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Alcohol
  • Organic oxide
  • Carbonyl group
  • Organopnictogen compound
  • Organic oxygen compound
  • Amine
  • Organooxygen compound
  • Primary alcohol
  • Primary amine
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-3.1ALOGPS
logP-8.4ChemAxon
logS-1.4ALOGPS
pKa (Strongest Acidic)11.22ChemAxon
pKa (Strongest Basic)10.16ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count12ChemAxon
Hydrogen Donor Count11ChemAxon
Polar Surface Area301.85 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity154.99 m³·mol⁻¹ChemAxon
Polarizability64.82 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA016948
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78440433
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound24762345
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Krasnoff SB, Keresztes I, Gillilan RE, Szebenyi DM, Donzelli BG, Churchill AC, Gibson DM: Serinocyclins A and B, cyclic heptapeptides from Metarhizium anisopliae. J Nat Prod. 2007 Dec;70(12):1919-24. doi: 10.1021/np070407i. Epub 2007 Nov 29. [PubMed:18044842 ]