NP-MRD: Showing NP-Card for Rubralide B (NP0007204)

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Record Information

Version

2.0

Created at

2020-12-09 04:03:38 UTC

Updated at

2021-07-15 16:56:57 UTC

NP-MRD ID

NP0007204

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Rubralide B

Provided By

NPAtlas

Description

3,4,6-Trihydroxy-1-oxo-1,3-dihydro-2-benzofuran-5-carbaldehyde belongs to the class of organic compounds known as benzofuranones. These are organic compounds containing a benzene ring fused to a furanone. Rubralide B is found in Penicillium and Talaromyces ruber. Based on a literature review very few articles have been published on 3,4,6-trihydroxy-1-oxo-1,3-dihydro-2-benzofuran-5-carbaldehyde.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118383D          

 21 22  0  0  0  0            999 V2000
    3.8459   -0.7614   -0.1293 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7227   -1.0488    0.3044 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5340   -0.2861    0.0129 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4836    0.8417   -0.7701 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5973    1.3561   -1.3617 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2629    1.5036   -0.9841 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8922    1.0512   -0.4276 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8255   -0.0803    0.3546 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3398   -0.7535    0.5879 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3744   -1.8875    1.3786 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2009   -0.3612    0.8359 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6128   -1.6046    0.3561 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0040    0.6592    0.2837 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2656    1.5385   -0.4872 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7030    2.5594   -1.1152 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6720   -1.9239    0.9305 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4992    1.0046   -1.3004 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2523    2.3899   -1.6053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4868   -2.2221    1.7915 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2996   -0.2986    1.9280 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2938   -1.6762   -0.5831 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  4  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
  8 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
  9  3  1  0  0  0  0
 14  7  1  0  0  0  0
  2 16  1  0  0  0  0
  5 17  1  0  0  0  0
  6 18  1  0  0  0  0
 10 19  1  0  0  0  0
 11 20  1  1  0  0  0
 12 21  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0007204

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C(C([H])=O)C(O[H])=C2C(=C1[H])C(=O)O[C@@]2([H])O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C9H6O6/c10-2-4-5(11)1-3-6(7(4)12)9(14)15-8(3)13/h1-2,9,11-12,14H/t9-/m1/s1

> <INCHI_KEY>
DSGMNZPWOONSDF-UHFFFAOYSA-N

> <FORMULA>
C9H6O6

> <MOLECULAR_WEIGHT>
210.141

> <EXACT_MASS>
210.016437913

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
21

> <JCHEM_AVERAGE_POLARIZABILITY>
17.81286877000861

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3R)-3,4,6-trihydroxy-1-oxo-1,3-dihydro-2-benzofuran-5-carbaldehyde

> <ALOGPS_LOGP>
0.24

> <JCHEM_LOGP>
1.569097841

> <ALOGPS_LOGS>
-1.41

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
8.765388040315337

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.425978348850929

> <JCHEM_PKA_STRONGEST_BASIC>
-4.600463970982793

> <JCHEM_POLAR_SURFACE_AREA>
104.06

> <JCHEM_REFRACTIVITY>
48.21360000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.18e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3R)-3,4,6-trihydroxy-1-oxo-3H-2-benzofuran-5-carbaldehyde

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  O   UNK     0       3.846  -0.761  -0.129  0.00  0.00           O+0
HETATM    2  C   UNK     0       2.723  -1.049   0.304  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.534  -0.286   0.013  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.484   0.842  -0.770  0.00  0.00           C+0
HETATM    5  O   UNK     0       2.597   1.356  -1.362  0.00  0.00           O+0
HETATM    6  C   UNK     0       0.263   1.504  -0.984  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.892   1.051  -0.428  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.826  -0.080   0.355  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.340  -0.754   0.588  0.00  0.00           C+0
HETATM   10  O   UNK     0       0.374  -1.888   1.379  0.00  0.00           O+0
HETATM   11  C   UNK     0      -2.201  -0.361   0.836  0.00  0.00           C+0
HETATM   12  O   UNK     0      -2.613  -1.605   0.356  0.00  0.00           O+0
HETATM   13  O   UNK     0      -3.004   0.659   0.284  0.00  0.00           O+0
HETATM   14  C   UNK     0      -2.266   1.539  -0.487  0.00  0.00           C+0
HETATM   15  O   UNK     0      -2.703   2.559  -1.115  0.00  0.00           O+0
HETATM   16  H   UNK     0       2.672  -1.924   0.931  0.00  0.00           H+0
HETATM   17  H   UNK     0       3.499   1.005  -1.300  0.00  0.00           H+0
HETATM   18  H   UNK     0       0.252   2.390  -1.605  0.00  0.00           H+0
HETATM   19  H   UNK     0      -0.487  -2.222   1.792  0.00  0.00           H+0
HETATM   20  H   UNK     0      -2.300  -0.299   1.928  0.00  0.00           H+0
HETATM   21  H   UNK     0      -2.294  -1.676  -0.583  0.00  0.00           H+0
CONECT    1    2                                                            
CONECT    2    1    3   16                                                  
CONECT    3    2    4    9                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4   17                                                       
CONECT    6    4    7   18                                                  
CONECT    7    6    8   14                                                  
CONECT    8    7    9   11                                                  
CONECT    9    8   10    3                                                  
CONECT   10    9   19                                                       
CONECT   11    8   12   13   20                                             
CONECT   12   11   21                                                       
CONECT   13   11   14                                                       
CONECT   14   13   15    7                                                  
CONECT   15   14                                                            
CONECT   16    2                                                            
CONECT   17    5                                                            
CONECT   18    6                                                            
CONECT   19   10                                                            
CONECT   20   11                                                            
CONECT   21   12                                                            
MASTER        0    0    0    0    0    0    0    0   21    0   44    0
END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₉H₆O₆

Average Mass

210.1410 Da

Monoisotopic Mass

210.01644 Da

IUPAC Name

(3R)-3,4,6-trihydroxy-1-oxo-1,3-dihydro-2-benzofuran-5-carbaldehyde

Traditional Name

(3R)-3,4,6-trihydroxy-1-oxo-3H-2-benzofuran-5-carbaldehyde

CAS Registry Number

Not Available

SMILES

OC1OC(=O)C2=CC(O)=C(C=O)C(O)=C12

InChI Identifier

InChI=1S/C9H6O6/c10-2-4-5(11)1-3-6(7(4)12)9(14)15-8(3)13/h1-2,9,11-12,14H

InChI Key

DSGMNZPWOONSDF-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Penicillium	NPAtlas	17690484
Talaromyces ruber	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as benzofuranones. These are organic compounds containing a benzene ring fused to a furanone.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzofurans

Sub Class

Benzofuranones

Direct Parent

Benzofuranones

Alternative Parents

Substituents

Benzofuranone
Phthalide
Isobenzofuranone
Isocoumaran
1-hydroxy-4-unsubstituted benzenoid
Phenol
1-hydroxy-2-unsubstituted benzenoid
Aryl-aldehyde
Benzenoid
Vinylogous acid
Lactone
Hemiacetal
Carboxylic acid ester
Carboxylic acid derivative
Polyol
Oxacycle
Aldehyde
Organooxygen compound
Hydrocarbon derivative
Organic oxygen compound
Organic oxide
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.24	ALOGPS
logP	1.57	ChemAxon
logS	-1.4	ALOGPS
pKa (Strongest Acidic)	7.43	ChemAxon
pKa (Strongest Basic)	-4.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	104.06 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	48.21 m³·mol⁻¹	ChemAxon
Polarizability	17.81 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA004562

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

60688016

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102516030

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Rubralide B (NP0007204)

MOL for NP0007204 (Rubralide B)

3D MOL for NP0007204 (Rubralide B)

3D SDF for NP0007204 (Rubralide B)

3D-SDF for NP0007204 (Rubralide B)

PDB for NP0007204 (Rubralide B)

3D PDB for NP0007204 (Rubralide B)

SMILES for NP0007204 (Rubralide B)

INCHI for NP0007204 (Rubralide B)

Structure for NP0007204 (Rubralide B)

3D Structure for NP0007204 (Rubralide B)