NP-MRD: Showing NP-Card for Hatomarubigin B (NP0007146)

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Record Information

Version

1.0

Created at

2020-12-09 04:01:13 UTC

Updated at

2021-07-15 16:56:47 UTC

NP-MRD ID

NP0007146

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Hatomarubigin B

Provided By

NPAtlas

Description

Hatomarubigin B belongs to the class of organic compounds known as angucyclines. These are polyketides with a structure based on then benz[a]anthracene skeleton, with the particularity that the central ring of the anthracene moiety is a para-quinone. Hatomarubigin B is found in Streptomyces lividans and Streptomyces sp. 2238-SVT4. It was first documented in 1991 (PMID: 1761414). Based on a literature review very few articles have been published on Hatomarubigin B.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118383D          

 41 44  0  0  0  0            999 V2000
    5.9790   -1.5737    0.0937 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5926   -1.3686   -0.0289 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9652   -0.2082    0.3945 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6699    0.8227    0.9666 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0185    1.9516    1.3718 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6115    2.1023    1.2206 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0146    3.2260    1.6319 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9603    1.0509    0.6477 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6079   -0.0981    0.2330 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8909   -1.2159   -0.3827 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5061   -2.2578   -0.7519 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4568   -1.1462   -0.5800 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2516   -2.1812   -1.1487 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6141   -2.0980   -1.3229 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2438   -0.9671   -0.9212 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5728    0.1142   -0.3396 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2211    0.0187   -0.1662 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5131    1.1170    0.4479 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0815    2.1305    0.8206 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3199    1.3197   -0.0314 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8317    2.4303   -0.2133 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6807    1.1751    0.4998 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3340   -0.1260    0.1199 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.8112    0.0137   -0.1209 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6998   -0.8217   -1.0637 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.5626   -0.6935   -0.2322 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2703   -1.7480    1.1622 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2362   -2.4743   -0.5124 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7373    0.6808    1.0688 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5575    2.7669    1.8214 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1552    3.6388    1.6834 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3267   -3.0616   -1.4495 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1329   -2.9162   -1.7643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3686    1.9767    0.1517 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6362    1.2292    1.6061 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2028   -0.8174    0.9776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3568    0.1370    0.8396 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0571    0.8265   -0.8294 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1711   -0.9444   -0.5640 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1445   -1.8134   -1.2478 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8998   -0.1972   -1.9576 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
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  8  9  2  0  0  0  0
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 24 39  1  0  0  0  0
 25 40  1  0  0  0  0
 25 41  1  0  0  0  0
M  END

     RDKit          3D

 41 44  0  0  0  0  0  0  0  0999 V2000
    5.9790   -1.5737    0.0937 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5926   -1.3686   -0.0289 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9652   -0.2082    0.3945 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6699    0.8227    0.9666 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0185    1.9516    1.3718 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6115    2.1023    1.2206 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0146    3.2260    1.6319 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9603    1.0509    0.6477 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6079   -0.0981    0.2330 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8909   -1.2159   -0.3827 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5061   -2.2578   -0.7519 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4568   -1.1462   -0.5800 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2516   -2.1812   -1.1487 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6141   -2.0980   -1.3229 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2438   -0.9671   -0.9212 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5728    0.1142   -0.3396 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2211    0.0187   -0.1662 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5131    1.1170    0.4479 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0815    2.1305    0.8206 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3199    1.3197   -0.0314 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8317    2.4303   -0.2133 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6807    1.1751    0.4998 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3340   -0.1260    0.1199 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.8112    0.0137   -0.1209 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6998   -0.8217   -1.0637 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5626   -0.6935   -0.2322 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2703   -1.7480    1.1622 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2362   -2.4743   -0.5124 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7373    0.6808    1.0688 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5575    2.7669    1.8214 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1552    3.6388    1.6834 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3267   -3.0616   -1.4495 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1329   -2.9162   -1.7643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3686    1.9767    0.1517 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6362    1.2292    1.6061 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2028   -0.8174    0.9776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3568    0.1370    0.8396 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0571    0.8265   -0.8294 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1711   -0.9444   -0.5640 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1445   -1.8134   -1.2478 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8998   -0.1972   -1.9576 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  6  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
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 17 18  1  0
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 22 23  1  0
 23 24  1  0
 23 25  1  0
  9  3  1  0
 17 12  1  0
 18  8  1  0
 25 15  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
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 22 34  1  0
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 24 39  1  0
 25 40  1  0
 25 41  1  0
M  END


  Mrv1652306242118383D          

 41 44  0  0  0  0            999 V2000
    5.9790   -1.5737    0.0937 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5926   -1.3686   -0.0289 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9652   -0.2082    0.3945 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6699    0.8227    0.9666 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0185    1.9516    1.3718 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6115    2.1023    1.2206 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0146    3.2260    1.6319 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9603    1.0509    0.6477 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6079   -0.0981    0.2330 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8909   -1.2159   -0.3827 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5061   -2.2578   -0.7519 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4568   -1.1462   -0.5800 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2516   -2.1812   -1.1487 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6141   -2.0980   -1.3229 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2438   -0.9671   -0.9212 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5728    0.1142   -0.3396 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2211    0.0187   -0.1662 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5131    1.1170    0.4479 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0815    2.1305    0.8206 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3199    1.3197   -0.0314 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8317    2.4303   -0.2133 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6807    1.1751    0.4998 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3340   -0.1260    0.1199 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.8112    0.0137   -0.1209 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6998   -0.8217   -1.0637 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.5626   -0.6935   -0.2322 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2703   -1.7480    1.1622 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.1552    3.6388    1.6834 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3267   -3.0616   -1.4495 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.6362    1.2292    1.6061 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2028   -0.8174    0.9776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3568    0.1370    0.8396 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.1711   -0.9444   -0.5640 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1445   -1.8134   -1.2478 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8998   -0.1972   -1.9576 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
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 23 24  1  0  0  0  0
 23 25  1  0  0  0  0
  9  3  1  0  0  0  0
 17 12  1  0  0  0  0
 18  8  1  0  0  0  0
 25 15  1  0  0  0  0
  1 26  1  0  0  0  0
  1 27  1  0  0  0  0
  1 28  1  0  0  0  0
  4 29  1  0  0  0  0
  5 30  1  0  0  0  0
  7 31  1  0  0  0  0
 13 32  1  0  0  0  0
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 22 34  1  0  0  0  0
 22 35  1  0  0  0  0
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 24 39  1  0  0  0  0
 25 40  1  0  0  0  0
 25 41  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0007146

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C([H])C([H])=C(OC([H])([H])[H])C2=C1C(=O)C1=C3C(=O)C([H])([H])[C@@]([H])(C([H])([H])[H])C([H])([H])C3=C([H])C([H])=C1C2=O

> <INCHI_IDENTIFIER>
InChI=1S/C20H16O5/c1-9-7-10-3-4-11-16(15(10)13(22)8-9)20(24)17-12(21)5-6-14(25-2)18(17)19(11)23/h3-6,9,21H,7-8H2,1-2H3/t9-/m0/s1

> <INCHI_KEY>
IAWMODONDSIOEK-VIFPVBQESA-N

> <FORMULA>
C20H16O5

> <MOLECULAR_WEIGHT>
336.343

> <EXACT_MASS>
336.099773615

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
41

> <JCHEM_AVERAGE_POLARIZABILITY>
35.46312860562806

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3S)-11-hydroxy-8-methoxy-3-methyl-1,2,3,4,7,12-hexahydrotetraphene-1,7,12-trione

> <ALOGPS_LOGP>
3.58

> <JCHEM_LOGP>
3.7023674359999994

> <ALOGPS_LOGS>
-4.34

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
16.522133291066357

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.720364162793036

> <JCHEM_PKA_STRONGEST_BASIC>
-4.865171432006626

> <JCHEM_POLAR_SURFACE_AREA>
80.67

> <JCHEM_REFRACTIVITY>
92.41239999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.55e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3S)-11-hydroxy-8-methoxy-3-methyl-3,4-dihydro-2H-tetraphene-1,7,12-trione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 41 44  0  0  0  0  0  0  0  0999 V2000
    5.9790   -1.5737    0.0937 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5926   -1.3686   -0.0289 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9652   -0.2082    0.3945 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6699    0.8227    0.9666 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0185    1.9516    1.3718 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6115    2.1023    1.2206 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0146    3.2260    1.6319 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9603    1.0509    0.6477 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6079   -0.0981    0.2330 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8909   -1.2159   -0.3827 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5061   -2.2578   -0.7519 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4568   -1.1462   -0.5800 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2516   -2.1812   -1.1487 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6141   -2.0980   -1.3229 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2438   -0.9671   -0.9212 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5728    0.1142   -0.3396 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2211    0.0187   -0.1662 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5131    1.1170    0.4479 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0815    2.1305    0.8206 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3199    1.3197   -0.0314 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8317    2.4303   -0.2133 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6807    1.1751    0.4998 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3340   -0.1260    0.1199 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.8112    0.0137   -0.1209 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6998   -0.8217   -1.0637 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5626   -0.6935   -0.2322 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2703   -1.7480    1.1622 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2362   -2.4743   -0.5124 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7373    0.6808    1.0688 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5575    2.7669    1.8214 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1552    3.6388    1.6834 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3267   -3.0616   -1.4495 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1329   -2.9162   -1.7643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3686    1.9767    0.1517 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6362    1.2292    1.6061 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2028   -0.8174    0.9776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3568    0.1370    0.8396 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0571    0.8265   -0.8294 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1711   -0.9444   -0.5640 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1445   -1.8134   -1.2478 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8998   -0.1972   -1.9576 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  6  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 16 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  1  0
 23 24  1  0
 23 25  1  0
  9  3  1  0
 17 12  1  0
 18  8  1  0
 25 15  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  4 29  1  0
  5 30  1  0
  7 31  1  0
 13 32  1  0
 14 33  1  0
 22 34  1  0
 22 35  1  0
 23 36  1  1
 24 37  1  0
 24 38  1  0
 24 39  1  0
 25 40  1  0
 25 41  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       5.979  -1.574   0.094  0.00  0.00           C+0
HETATM    2  O   UNK     0       4.593  -1.369  -0.029  0.00  0.00           O+0
HETATM    3  C   UNK     0       3.965  -0.208   0.395  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.670   0.823   0.967  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.019   1.952   1.372  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.611   2.102   1.221  0.00  0.00           C+0
HETATM    7  O   UNK     0       2.015   3.226   1.632  0.00  0.00           O+0
HETATM    8  C   UNK     0       1.960   1.051   0.648  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.608  -0.098   0.233  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.891  -1.216  -0.383  0.00  0.00           C+0
HETATM   11  O   UNK     0       2.506  -2.258  -0.752  0.00  0.00           O+0
HETATM   12  C   UNK     0       0.457  -1.146  -0.580  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.252  -2.181  -1.149  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.614  -2.098  -1.323  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.244  -0.967  -0.921  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.573   0.114  -0.340  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.221   0.019  -0.166  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.513   1.117   0.448  0.00  0.00           C+0
HETATM   19  O   UNK     0      -0.082   2.131   0.821  0.00  0.00           O+0
HETATM   20  C   UNK     0      -2.320   1.320  -0.031  0.00  0.00           C+0
HETATM   21  O   UNK     0      -1.832   2.430  -0.213  0.00  0.00           O+0
HETATM   22  C   UNK     0      -3.681   1.175   0.500  0.00  0.00           C+0
HETATM   23  C   UNK     0      -4.334  -0.126   0.120  0.00  0.00           C+0
HETATM   24  C   UNK     0      -5.811   0.014  -0.121  0.00  0.00           C+0
HETATM   25  C   UNK     0      -3.700  -0.822  -1.064  0.00  0.00           C+0
HETATM   26  H   UNK     0       6.563  -0.694  -0.232  0.00  0.00           H+0
HETATM   27  H   UNK     0       6.270  -1.748   1.162  0.00  0.00           H+0
HETATM   28  H   UNK     0       6.236  -2.474  -0.512  0.00  0.00           H+0
HETATM   29  H   UNK     0       5.737   0.681   1.069  0.00  0.00           H+0
HETATM   30  H   UNK     0       4.558   2.767   1.821  0.00  0.00           H+0
HETATM   31  H   UNK     0       1.155   3.639   1.683  0.00  0.00           H+0
HETATM   32  H   UNK     0       0.327  -3.062  -1.450  0.00  0.00           H+0
HETATM   33  H   UNK     0      -2.133  -2.916  -1.764  0.00  0.00           H+0
HETATM   34  H   UNK     0      -4.369   1.977   0.152  0.00  0.00           H+0
HETATM   35  H   UNK     0      -3.636   1.229   1.606  0.00  0.00           H+0
HETATM   36  H   UNK     0      -4.203  -0.817   0.978  0.00  0.00           H+0
HETATM   37  H   UNK     0      -6.357   0.137   0.840  0.00  0.00           H+0
HETATM   38  H   UNK     0      -6.057   0.827  -0.829  0.00  0.00           H+0
HETATM   39  H   UNK     0      -6.171  -0.944  -0.564  0.00  0.00           H+0
HETATM   40  H   UNK     0      -4.144  -1.813  -1.248  0.00  0.00           H+0
HETATM   41  H   UNK     0      -3.900  -0.197  -1.958  0.00  0.00           H+0
CONECT    1    2   26   27   28                                             
CONECT    2    1    3                                                       
CONECT    3    2    4    9                                                  
CONECT    4    3    5   29                                                  
CONECT    5    4    6   30                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6   31                                                       
CONECT    8    6    9   18                                                  
CONECT    9    8   10    3                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   17                                                  
CONECT   13   12   14   32                                                  
CONECT   14   13   15   33                                                  
CONECT   15   14   16   25                                                  
CONECT   16   15   17   20                                                  
CONECT   17   16   18   12                                                  
CONECT   18   17   19    8                                                  
CONECT   19   18                                                            
CONECT   20   16   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   34   35                                             
CONECT   23   22   24   25   36                                             
CONECT   24   23   37   38   39                                             
CONECT   25   23   15   40   41                                             
CONECT   26    1                                                            
CONECT   27    1                                                            
CONECT   28    1                                                            
CONECT   29    4                                                            
CONECT   30    5                                                            
CONECT   31    7                                                            
CONECT   32   13                                                            
CONECT   33   14                                                            
CONECT   34   22                                                            
CONECT   35   22                                                            
CONECT   36   23                                                            
CONECT   37   24                                                            
CONECT   38   24                                                            
CONECT   39   24                                                            
CONECT   40   25                                                            
CONECT   41   25                                                            
MASTER        0    0    0    0    0    0    0    0   41    0   88    0
END

RDKit          3D

41 44  0  0  0  0  0  0  0  0999 V2000
    5.9790   -1.5737    0.0937 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5926   -1.3686   -0.0289 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9652   -0.2082    0.3945 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6699    0.8227    0.9666 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0185    1.9516    1.3718 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6115    2.1023    1.2206 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0146    3.2260    1.6319 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9603    1.0509    0.6477 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6079   -0.0981    0.2330 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8909   -1.2159   -0.3827 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5061   -2.2578   -0.7519 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4568   -1.1462   -0.5800 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2516   -2.1812   -1.1487 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6141   -2.0980   -1.3229 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2438   -0.9671   -0.9212 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5728    0.1142   -0.3396 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2211    0.0187   -0.1662 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5131    1.1170    0.4479 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0815    2.1305    0.8206 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3199    1.3197   -0.0314 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8317    2.4303   -0.2133 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6807    1.1751    0.4998 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3340   -0.1260    0.1199 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.8112    0.0137   -0.1209 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6998   -0.8217   -1.0637 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5626   -0.6935   -0.2322 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2703   -1.7480    1.1622 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2362   -2.4743   -0.5124 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7373    0.6808    1.0688 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5575    2.7669    1.8214 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1552    3.6388    1.6834 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3267   -3.0616   -1.4495 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1329   -2.9162   -1.7643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3686    1.9767    0.1517 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6362    1.2292    1.6061 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2028   -0.8174    0.9776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3568    0.1370    0.8396 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0571    0.8265   -0.8294 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1711   -0.9444   -0.5640 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1445   -1.8134   -1.2478 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8998   -0.1972   -1.9576 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  6  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 16 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  1  0
 23 24  1  0
 23 25  1  0
  9  3  1  0
 17 12  1  0
 18  8  1  0
 25 15  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  4 29  1  0
  5 30  1  0
  7 31  1  0
 13 32  1  0
 14 33  1  0
 22 34  1  0
 22 35  1  0
 23 36  1  1
 24 37  1  0
 24 38  1  0
 24 39  1  0
 25 40  1  0
 25 41  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₀H₁₆O₅

Average Mass

336.3430 Da

Monoisotopic Mass

336.09977 Da

IUPAC Name

(3S)-11-hydroxy-8-methoxy-3-methyl-1,2,3,4,7,12-hexahydrotetraphene-1,7,12-trione

Traditional Name

(3S)-11-hydroxy-8-methoxy-3-methyl-3,4-dihydro-2H-tetraphene-1,7,12-trione

CAS Registry Number

Not Available

SMILES

COC1=C2C(=O)C3=C(C(=O)C2=C(O)C=C1)C1=C(C[C@H](C)CC1=O)C=C3

InChI Identifier

InChI=1S/C20H16O5/c1-9-7-10-3-4-11-16(15(10)13(22)8-9)20(24)17-12(21)5-6-14(25-2)18(17)19(11)23/h3-6,9,21H,7-8H2,1-2H3/t9-/m0/s1

InChI Key

IAWMODONDSIOEK-VIFPVBQESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces lividans	LOTUS Database	35616633
Streptomyces sp. 2238-SVT4	NPAtlas	1761414

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as angucyclines. These are polyketides with a structure based on then benz[a]anthracene skeleton, with the particularity that the central ring of the anthracene moiety is a para-quinone.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Angucyclines

Sub Class

Not Available

Direct Parent

Angucyclines

Alternative Parents

Substituents

Angucycline core
9,10-anthraquinone
Anthraquinone
Anthracene
Phenanthrene
Tetralin
Anisole
Aryl alkyl ketone
Aryl ketone
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Benzenoid
Vinylogous acid
Ketone
Ether
Organooxygen compound
Organic oxygen compound
Hydrocarbon derivative
Organic oxide
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.58	ALOGPS
logP	3.7	ChemAxon
logS	-4.3	ALOGPS
pKa (Strongest Acidic)	8.72	ChemAxon
pKa (Strongest Basic)	-4.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	80.67 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	92.41 m³·mol⁻¹	ChemAxon
Polarizability	35.46 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA020431

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00017187

Chemspider ID

116796

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

132243

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Hayakawa Y, Ha SC, Kim YJ, Furihata K, Seto H: Studies on the isotetracenone antibiotics. IV. Hatomarubigins A, B, C and D, new isotetracenone antibiotics effective against multidrug-resistant tumor cells. J Antibiot (Tokyo). 1991 Nov;44(11):1179-86. doi: 10.7164/antibiotics.44.1179. [PubMed:1761414 ]

Showing NP-Card for Hatomarubigin B (NP0007146)

MOL for NP0007146 (Hatomarubigin B)

3D MOL for NP0007146 (Hatomarubigin B)

3D SDF for NP0007146 (Hatomarubigin B)

3D-SDF for NP0007146 (Hatomarubigin B)

PDB for NP0007146 (Hatomarubigin B)

3D PDB for NP0007146 (Hatomarubigin B)

SMILES for NP0007146 (Hatomarubigin B)

INCHI for NP0007146 (Hatomarubigin B)

Structure for NP0007146 (Hatomarubigin B)

3D Structure for NP0007146 (Hatomarubigin B)