NP-MRD: Showing NP-Card for Spirodionic acid (NP0007120)

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Record Information

Version

2.0

Created at

2020-12-09 04:00:11 UTC

Updated at

2021-07-15 16:56:43 UTC

NP-MRD ID

NP0007120

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Spirodionic acid

Provided By

NPAtlas

Description

Spirodionic acid is also known as spirodionate. Spirodionic acid is found in Streptomyces. Spirodionic acid was first documented in 2007 (PMID: 17583901). Based on a literature review very few articles have been published on Spirodionic acid.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118373D          

 39 40  0  0  0  0            999 V2000
    2.8830    0.8297    1.0030 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4110   -0.2505    0.1082 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9790   -0.5756    0.1195 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6479   -1.7859    0.6158 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7476   -2.6615    1.0987 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7282   -2.2652    0.6821 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0857   -3.1729    1.4413 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6652   -1.5505   -0.2590 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.0951   -1.9642    0.0041 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4479   -0.0934    0.0670 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0814    0.3195   -0.4279 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0014    0.3160   -1.9285 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0439   -0.6350   -2.6674 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0184    1.7167   -2.4471 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5841    2.4761   -1.3085 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0701    1.7689   -0.0920 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6743    2.1932    1.1272 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0384    2.6074    2.1138 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0552    2.1447    1.2033 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8021    0.4929    1.6024 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2010    1.1888    1.7667 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3309    1.6536    0.3718 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6380   -0.0076   -0.9845 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0583   -1.1468    0.2805 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3377   -3.0461    0.2672 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3633   -2.1541    1.8988 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2922   -3.5245    1.6367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3983   -1.7687   -1.2984 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2883   -2.8722   -0.6054 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2565   -2.1662    1.0656 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7732   -1.1739   -0.3602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4094   -0.0323    1.1783 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2368    0.4756   -0.4103 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0577    2.0723   -2.6218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5601    1.8123   -3.3884 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3636    3.5434   -1.3053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6756    2.3411   -1.2890 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0992    2.1534   -0.1018 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5627    2.7415    1.8435 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  4  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  6  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
 11  3  1  0  0  0  0
 16 11  1  0  0  0  0
  1 20  1  0  0  0  0
  1 21  1  0  0  0  0
  1 22  1  0  0  0  0
  2 23  1  0  0  0  0
  2 24  1  0  0  0  0
  5 25  1  0  0  0  0
  5 26  1  0  0  0  0
  5 27  1  0  0  0  0
  8 28  1  6  0  0  0
  9 29  1  0  0  0  0
  9 30  1  0  0  0  0
  9 31  1  0  0  0  0
 10 32  1  0  0  0  0
 10 33  1  0  0  0  0
 14 34  1  0  0  0  0
 14 35  1  0  0  0  0
 15 36  1  0  0  0  0
 15 37  1  0  0  0  0
 16 38  1  1  0  0  0
 19 39  1  0  0  0  0
M  END

     RDKit          3D

 39 40  0  0  0  0  0  0  0  0999 V2000
    2.8830    0.8297    1.0030 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4110   -0.2505    0.1082 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9790   -0.5756    0.1195 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6479   -1.7859    0.6158 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7476   -2.6615    1.0987 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7282   -2.2652    0.6821 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0857   -3.1729    1.4413 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6652   -1.5505   -0.2590 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.0951   -1.9642    0.0041 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4479   -0.0934    0.0670 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0814    0.3195   -0.4279 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0014    0.3160   -1.9285 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0439   -0.6350   -2.6674 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0184    1.7167   -2.4471 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5841    2.4761   -1.3085 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0701    1.7689   -0.0920 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6743    2.1932    1.1272 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0384    2.6074    2.1138 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0552    2.1447    1.2033 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8021    0.4929    1.6024 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2010    1.1888    1.7667 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3309    1.6536    0.3718 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6380   -0.0076   -0.9845 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0583   -1.1468    0.2805 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3377   -3.0461    0.2672 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3633   -2.1541    1.8988 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2922   -3.5245    1.6367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3983   -1.7687   -1.2984 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2883   -2.8722   -0.6054 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2565   -2.1662    1.0656 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7732   -1.1739   -0.3602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4094   -0.0323    1.1783 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2368    0.4756   -0.4103 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0577    2.0723   -2.6218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5601    1.8123   -3.3884 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3636    3.5434   -1.3053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6756    2.3411   -1.2890 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0992    2.1534   -0.1018 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5627    2.7415    1.8435 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  4  6  1  0
  6  7  2  0
  6  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 11 12  1  6
 12 13  2  0
 12 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  2  0
 17 19  1  0
 11  3  1  0
 16 11  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  2 23  1  0
  2 24  1  0
  5 25  1  0
  5 26  1  0
  5 27  1  0
  8 28  1  6
  9 29  1  0
  9 30  1  0
  9 31  1  0
 10 32  1  0
 10 33  1  0
 14 34  1  0
 14 35  1  0
 15 36  1  0
 15 37  1  0
 16 38  1  1
 19 39  1  0
M  END


  Mrv1652306242118373D          

 39 40  0  0  0  0            999 V2000
    2.8830    0.8297    1.0030 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4110   -0.2505    0.1082 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9790   -0.5756    0.1195 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6479   -1.7859    0.6158 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7476   -2.6615    1.0987 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7282   -2.2652    0.6821 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0857   -3.1729    1.4413 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6652   -1.5505   -0.2590 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.0951   -1.9642    0.0041 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4479   -0.0934    0.0670 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0814    0.3195   -0.4279 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0014    0.3160   -1.9285 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0439   -0.6350   -2.6674 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0184    1.7167   -2.4471 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5841    2.4761   -1.3085 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0701    1.7689   -0.0920 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6743    2.1932    1.1272 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0384    2.6074    2.1138 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0552    2.1447    1.2033 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8021    0.4929    1.6024 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2010    1.1888    1.7667 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3309    1.6536    0.3718 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6380   -0.0076   -0.9845 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0583   -1.1468    0.2805 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3377   -3.0461    0.2672 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3633   -2.1541    1.8988 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2922   -3.5245    1.6367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3983   -1.7687   -1.2984 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2883   -2.8722   -0.6054 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2565   -2.1662    1.0656 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7732   -1.1739   -0.3602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4094   -0.0323    1.1783 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2368    0.4756   -0.4103 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0577    2.0723   -2.6218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5601    1.8123   -3.3884 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3636    3.5434   -1.3053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6756    2.3411   -1.2890 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0992    2.1534   -0.1018 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5627    2.7415    1.8435 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  4  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  6  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
 11  3  1  0  0  0  0
 16 11  1  0  0  0  0
  1 20  1  0  0  0  0
  1 21  1  0  0  0  0
  1 22  1  0  0  0  0
  2 23  1  0  0  0  0
  2 24  1  0  0  0  0
  5 25  1  0  0  0  0
  5 26  1  0  0  0  0
  5 27  1  0  0  0  0
  8 28  1  6  0  0  0
  9 29  1  0  0  0  0
  9 30  1  0  0  0  0
  9 31  1  0  0  0  0
 10 32  1  0  0  0  0
 10 33  1  0  0  0  0
 14 34  1  0  0  0  0
 14 35  1  0  0  0  0
 15 36  1  0  0  0  0
 15 37  1  0  0  0  0
 16 38  1  1  0  0  0
 19 39  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0007120

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)[C@]1([H])C([H])([H])C([H])([H])C(=O)[C@@]11C(=C(C(=O)[C@@]([H])(C([H])([H])[H])C1([H])[H])C([H])([H])[H])C([H])([H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C15H20O4/c1-4-10-9(3)13(17)8(2)7-15(10)11(14(18)19)5-6-12(15)16/h8,11H,4-7H2,1-3H3,(H,18,19)/t8-,11-,15-/m0/s1

> <INCHI_KEY>
LFDLVXYMKUPPOT-CYBUAMNDSA-N

> <FORMULA>
C15H20O4

> <MOLECULAR_WEIGHT>
264.321

> <EXACT_MASS>
264.136159124

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
27.519618437139062

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,5R,9S)-6-ethyl-7,9-dimethyl-4,8-dioxospiro[4.5]dec-6-ene-1-carboxylic acid

> <ALOGPS_LOGP>
1.90

> <JCHEM_LOGP>
2.6804232543333337

> <ALOGPS_LOGS>
-2.26

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
19.07084410404278

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.411087594989531

> <JCHEM_PKA_STRONGEST_BASIC>
-5.388880749293695

> <JCHEM_POLAR_SURFACE_AREA>
71.44

> <JCHEM_REFRACTIVITY>
70.51190000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.44e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,5R,9S)-6-ethyl-7,9-dimethyl-4,8-dioxospiro[4.5]dec-6-ene-1-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 39 40  0  0  0  0  0  0  0  0999 V2000
    2.8830    0.8297    1.0030 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4110   -0.2505    0.1082 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9790   -0.5756    0.1195 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6479   -1.7859    0.6158 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7476   -2.6615    1.0987 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7282   -2.2652    0.6821 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0857   -3.1729    1.4413 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6652   -1.5505   -0.2590 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.0951   -1.9642    0.0041 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4479   -0.0934    0.0670 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0814    0.3195   -0.4279 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0014    0.3160   -1.9285 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0439   -0.6350   -2.6674 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0184    1.7167   -2.4471 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5841    2.4761   -1.3085 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0701    1.7689   -0.0920 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6743    2.1932    1.1272 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0384    2.6074    2.1138 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0552    2.1447    1.2033 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8021    0.4929    1.6024 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2010    1.1888    1.7667 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3309    1.6536    0.3718 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6380   -0.0076   -0.9845 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0583   -1.1468    0.2805 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3377   -3.0461    0.2672 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3633   -2.1541    1.8988 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2922   -3.5245    1.6367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3983   -1.7687   -1.2984 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2883   -2.8722   -0.6054 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2565   -2.1662    1.0656 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7732   -1.1739   -0.3602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4094   -0.0323    1.1783 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2368    0.4756   -0.4103 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0577    2.0723   -2.6218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5601    1.8123   -3.3884 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3636    3.5434   -1.3053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6756    2.3411   -1.2890 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0992    2.1534   -0.1018 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5627    2.7415    1.8435 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  4  6  1  0
  6  7  2  0
  6  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 11 12  1  6
 12 13  2  0
 12 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  2  0
 17 19  1  0
 11  3  1  0
 16 11  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  2 23  1  0
  2 24  1  0
  5 25  1  0
  5 26  1  0
  5 27  1  0
  8 28  1  6
  9 29  1  0
  9 30  1  0
  9 31  1  0
 10 32  1  0
 10 33  1  0
 14 34  1  0
 14 35  1  0
 15 36  1  0
 15 37  1  0
 16 38  1  1
 19 39  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       2.883   0.830   1.003  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.411  -0.251   0.108  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.979  -0.576   0.120  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.648  -1.786   0.616  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.748  -2.662   1.099  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.728  -2.265   0.682  0.00  0.00           C+0
HETATM    7  O   UNK     0      -1.086  -3.173   1.441  0.00  0.00           O+0
HETATM    8  C   UNK     0      -1.665  -1.551  -0.259  0.00  0.00           C+0
HETATM    9  C   UNK     0      -3.095  -1.964   0.004  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.448  -0.093   0.067  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.081   0.320  -0.428  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.001   0.316  -1.929  0.00  0.00           C+0
HETATM   13  O   UNK     0       0.044  -0.635  -2.667  0.00  0.00           O+0
HETATM   14  C   UNK     0       0.018   1.717  -2.447  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.584   2.476  -1.309  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.070   1.769  -0.092  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.674   2.193   1.127  0.00  0.00           C+0
HETATM   18  O   UNK     0      -0.038   2.607   2.114  0.00  0.00           O+0
HETATM   19  O   UNK     0      -2.055   2.145   1.203  0.00  0.00           O+0
HETATM   20  H   UNK     0       3.802   0.493   1.602  0.00  0.00           H+0
HETATM   21  H   UNK     0       2.201   1.189   1.767  0.00  0.00           H+0
HETATM   22  H   UNK     0       3.331   1.654   0.372  0.00  0.00           H+0
HETATM   23  H   UNK     0       2.638  -0.008  -0.985  0.00  0.00           H+0
HETATM   24  H   UNK     0       3.058  -1.147   0.281  0.00  0.00           H+0
HETATM   25  H   UNK     0       2.338  -3.046   0.267  0.00  0.00           H+0
HETATM   26  H   UNK     0       2.363  -2.154   1.899  0.00  0.00           H+0
HETATM   27  H   UNK     0       1.292  -3.525   1.637  0.00  0.00           H+0
HETATM   28  H   UNK     0      -1.398  -1.769  -1.298  0.00  0.00           H+0
HETATM   29  H   UNK     0      -3.288  -2.872  -0.605  0.00  0.00           H+0
HETATM   30  H   UNK     0      -3.256  -2.166   1.066  0.00  0.00           H+0
HETATM   31  H   UNK     0      -3.773  -1.174  -0.360  0.00  0.00           H+0
HETATM   32  H   UNK     0      -1.409  -0.032   1.178  0.00  0.00           H+0
HETATM   33  H   UNK     0      -2.237   0.476  -0.410  0.00  0.00           H+0
HETATM   34  H   UNK     0       1.058   2.072  -2.622  0.00  0.00           H+0
HETATM   35  H   UNK     0      -0.560   1.812  -3.388  0.00  0.00           H+0
HETATM   36  H   UNK     0      -0.364   3.543  -1.305  0.00  0.00           H+0
HETATM   37  H   UNK     0      -1.676   2.341  -1.289  0.00  0.00           H+0
HETATM   38  H   UNK     0       1.099   2.153  -0.102  0.00  0.00           H+0
HETATM   39  H   UNK     0      -2.563   2.741   1.843  0.00  0.00           H+0
CONECT    1    2   20   21   22                                             
CONECT    2    1    3   23   24                                             
CONECT    3    2    4   11                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4   25   26   27                                             
CONECT    6    4    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   10   28                                             
CONECT    9    8   29   30   31                                             
CONECT   10    8   11   32   33                                             
CONECT   11   10   12    3   16                                             
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   34   35                                             
CONECT   15   14   16   36   37                                             
CONECT   16   15   17   11   38                                             
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   39                                                       
CONECT   20    1                                                            
CONECT   21    1                                                            
CONECT   22    1                                                            
CONECT   23    2                                                            
CONECT   24    2                                                            
CONECT   25    5                                                            
CONECT   26    5                                                            
CONECT   27    5                                                            
CONECT   28    8                                                            
CONECT   29    9                                                            
CONECT   30    9                                                            
CONECT   31    9                                                            
CONECT   32   10                                                            
CONECT   33   10                                                            
CONECT   34   14                                                            
CONECT   35   14                                                            
CONECT   36   15                                                            
CONECT   37   15                                                            
CONECT   38   16                                                            
CONECT   39   19                                                            
MASTER        0    0    0    0    0    0    0    0   39    0   80    0
END

RDKit          3D

39 40  0  0  0  0  0  0  0  0999 V2000
    2.8830    0.8297    1.0030 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4110   -0.2505    0.1082 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9790   -0.5756    0.1195 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6479   -1.7859    0.6158 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7476   -2.6615    1.0987 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7282   -2.2652    0.6821 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0857   -3.1729    1.4413 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6652   -1.5505   -0.2590 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.0951   -1.9642    0.0041 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4479   -0.0934    0.0670 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0814    0.3195   -0.4279 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0014    0.3160   -1.9285 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0439   -0.6350   -2.6674 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0184    1.7167   -2.4471 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5841    2.4761   -1.3085 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0701    1.7689   -0.0920 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6743    2.1932    1.1272 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0384    2.6074    2.1138 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0552    2.1447    1.2033 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8021    0.4929    1.6024 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2010    1.1888    1.7667 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3309    1.6536    0.3718 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6380   -0.0076   -0.9845 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0583   -1.1468    0.2805 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3377   -3.0461    0.2672 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3633   -2.1541    1.8988 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2922   -3.5245    1.6367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3983   -1.7687   -1.2984 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2883   -2.8722   -0.6054 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2565   -2.1662    1.0656 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7732   -1.1739   -0.3602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4094   -0.0323    1.1783 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2368    0.4756   -0.4103 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0577    2.0723   -2.6218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5601    1.8123   -3.3884 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3636    3.5434   -1.3053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6756    2.3411   -1.2890 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0992    2.1534   -0.1018 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5627    2.7415    1.8435 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  4  6  1  0
  6  7  2  0
  6  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 11 12  1  6
 12 13  2  0
 12 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  2  0
 17 19  1  0
 11  3  1  0
 16 11  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  2 23  1  0
  2 24  1  0
  5 25  1  0
  5 26  1  0
  5 27  1  0
  8 28  1  6
  9 29  1  0
  9 30  1  0
  9 31  1  0
 10 32  1  0
 10 33  1  0
 14 34  1  0
 14 35  1  0
 15 36  1  0
 15 37  1  0
 16 38  1  1
 19 39  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
Spirodionate	Generator
(1R,5R,9S)-6-Ethyl-7,9-dimethyl-4,8-dioxospiro[4.5]dec-6-ene-1-carboxylate	Generator

Chemical Formula

C₁₅H₂₀O₄

Average Mass

264.3210 Da

Monoisotopic Mass

264.13616 Da

IUPAC Name

(1R,5R,9S)-6-ethyl-7,9-dimethyl-4,8-dioxospiro[4.5]dec-6-ene-1-carboxylic acid

Traditional Name

(1R,5R,9S)-6-ethyl-7,9-dimethyl-4,8-dioxospiro[4.5]dec-6-ene-1-carboxylic acid

CAS Registry Number

Not Available

SMILES

CCC1=C(C)C(=O)[C@@H](C)C[C@@]11[C@@H](CCC1=O)C(O)=O

InChI Identifier

InChI=1S/C15H20O4/c1-4-10-9(3)13(17)8(2)7-15(10)11(14(18)19)5-6-12(15)16/h8,11H,4-7H2,1-3H3,(H,18,19)/t8-,11-,15-/m0/s1

InChI Key

LFDLVXYMKUPPOT-CYBUAMNDSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	17583901

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.9	ALOGPS
logP	2.68	ChemAxon
logS	-2.3	ALOGPS
pKa (Strongest Acidic)	4.41	ChemAxon
pKa (Strongest Basic)	-5.4	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	71.44 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	70.51 m³·mol⁻¹	ChemAxon
Polarizability	27.52 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA012120

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78437712

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

23635065

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Textor A, Papastavrou I, Siewert J, Magull J, Kulik A, Fiedler HP, von Zezschwitz P, Grond S: Spirodionic acid, a novel metabolite from Streptomyces sp., part 1: structure elucidation and Diels-Alder-type biosynthesis. Chemistry. 2007;13(26):7416-23. doi: 10.1002/chem.200601687. [PubMed:17583901 ]

Showing NP-Card for Spirodionic acid (NP0007120)

MOL for NP0007120 (Spirodionic acid)

3D MOL for NP0007120 (Spirodionic acid)

3D SDF for NP0007120 (Spirodionic acid)

3D-SDF for NP0007120 (Spirodionic acid)

PDB for NP0007120 (Spirodionic acid)

3D PDB for NP0007120 (Spirodionic acid)

SMILES for NP0007120 (Spirodionic acid)

INCHI for NP0007120 (Spirodionic acid)

Structure for NP0007120 (Spirodionic acid)

3D Structure for NP0007120 (Spirodionic acid)