Np mrd loader

Record Information
Version2.0
Created at2020-12-09 03:55:06 UTC
Updated at2021-07-15 16:56:23 UTC
NP-MRD IDNP0007004
Secondary Accession NumbersNone
Natural Product Identification
Common NamePahayokolide A
Provided ByNPAtlasNPAtlas Logo
Description Pahayokolide A is found in Lyngbya and Lyngbya sp.. Based on a literature review very few articles have been published on 3-[(6S,13S,19S,22S,25E,28S,31Z,34S)-34-benzyl-10-(4,5-dihydroxy-7-methyl-2-{[4-methyl-2-(N-methylacetamido)pentanoyl]oxy}octyl)-25,31-diethylidene-5,8,9,12,21,24,27,30,33,36-decahydroxy-22-[(1R)-1-hydroxyethyl]-28-(hydroxymethyl)-2,18-dioxo-19-(2-phenylethyl)-1,4,7,11,17,20,23,26,29,32,35-undecaazatricyclo[35.3.0.0¹³,¹⁷]Tetraconta-4,7,11,20,23,26,29,32,35-nonaen-6-yl]propanimidic acid.
Structure
Thumb
Synonyms
ValueSource
3-[(6S,13S,19S,22S,25E,28S,31Z,34S)-34-Benzyl-10-(4,5-dihydroxy-7-methyl-2-{[4-methyl-2-(N-methylacetamido)pentanoyl]oxy}octyl)-25,31-diethylidene-5,8,9,12,21,24,27,30,33,36-decahydroxy-22-[(1R)-1-hydroxyethyl]-28-(hydroxymethyl)-2,18-dioxo-19-(2-phenylethyl)-1,4,7,11,17,20,23,26,29,32,35-undecaazatricyclo[35.3.0.0,]tetraconta-4,7,11,20,23,26,29,32,35-nonaen-6-yl]propanimidateGenerator
Chemical FormulaC72H105N13O20
Average Mass1472.7030 Da
Monoisotopic Mass1471.75988 Da
IUPAC Name(2S,4R,5R)-1-[(6S,9R,10S,13S,19S,22S,25E,28S,31Z,34S,37R)-34-benzyl-6-(2-carbamoylethyl)-25,31-diethylidene-9-hydroxy-22-[(1R)-1-hydroxyethyl]-28-(hydroxymethyl)-2,5,8,12,18,21,24,27,30,33,36-undecaoxo-19-(2-phenylethyl)-1,4,7,11,17,20,23,26,29,32,35-undecaazatricyclo[35.3.0.0^{13,17}]tetracontan-10-yl]-4,5-dihydroxy-7-methyloctan-2-yl (2R)-4-methyl-2-(N-methylacetamido)pentanoate
Traditional Name(2S,4R,5R)-1-[(6S,9R,10S,13S,19S,22S,25E,28S,31Z,34S,37R)-34-benzyl-6-(2-carbamoylethyl)-25,31-diethylidene-9-hydroxy-22-[(1R)-1-hydroxyethyl]-28-(hydroxymethyl)-2,5,8,12,18,21,24,27,30,33,36-undecaoxo-19-(2-phenylethyl)-1,4,7,11,17,20,23,26,29,32,35-undecaazatricyclo[35.3.0.0^{13,17}]tetracontan-10-yl]-4,5-dihydroxy-7-methyloctan-2-yl (2R)-4-methyl-2-(N-methylacetamido)pentanoate
CAS Registry NumberNot Available
SMILES
C\C=C1/NC(=O)[C@H](CC2=CC=CC=C2)NC(=O)C2CCCN2C(=O)CNC(=O)[C@H](CCC(N)=O)NC(=O)C(O)C(CC(CC(O)C(O)CC(C)C)OC(=O)C(CC(C)C)N(C)C(C)=O)NC(=O)[C@@H]2CCCN2C(=O)[C@H](CCC2=CC=CC=C2)NC(=O)[C@@H](NC(=O)\C(NC(=O)[C@H](CO)NC1=O)=C/C)[C@@H](C)O
InChI Identifier
InChI=1S/C72H105N13O20/c1-10-46-63(95)81-52(38-86)66(98)76-47(11-2)64(96)82-60(41(7)87)69(101)78-49(27-26-43-20-14-12-15-21-43)71(103)85-31-19-25-54(85)68(100)79-50(35-45(36-57(90)56(89)33-40(5)6)105-72(104)55(32-39(3)4)83(9)42(8)88)61(93)70(102)77-48(28-29-58(73)91)62(94)74-37-59(92)84-30-18-24-53(84)67(99)80-51(65(97)75-46)34-44-22-16-13-17-23-44/h10-17,20-23,39-41,45,48-57,60-61,86-87,89-90,93H,18-19,24-38H2,1-9H3,(H2,73,91)(H,74,94)(H,75,97)(H,76,98)(H,77,102)(H,78,101)(H,79,100)(H,80,99)(H,81,95)(H,82,96)/b46-10-,47-11+/t41-,45?,48+,49+,50?,51+,52+,53?,54+,55?,56?,57?,60+,61?/m1/s1
InChI KeyKAWIJJOWYRPPRV-IEUVJMAOSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
LyngbyaNPAtlas
Lyngbya sp.-
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.14ALOGPS
logP-4.1ChemAxon
logS-4.3ALOGPS
pKa (Strongest Acidic)11.34ChemAxon
pKa (Strongest Basic)-3.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count19ChemAxon
Hydrogen Donor Count15ChemAxon
Polar Surface Area493.37 ŲChemAxon
Rotatable Bond Count23ChemAxon
Refractivity379.57 m³·mol⁻¹ChemAxon
Polarizability154.01 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA002704
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78445491
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139583844
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References