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Record Information
Version1.0
Created at2020-12-09 03:54:23 UTC
Updated at2021-07-15 16:56:21 UTC
NP-MRD IDNP0006990
Secondary Accession NumbersNone
Natural Product Identification
Common NameSansanmycin
Provided ByNPAtlasNPAtlas Logo
DescriptionSansanmycin belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond. Sansanmycin is found in Streptomyces sp. It was first documented in 2007 (PMID: 17420567). Based on a literature review very few articles have been published on Sansanmycin (PMID: 31341273) (PMID: 32897546) (PMID: 29885606) (PMID: 30496665).
Structure
Thumb
Synonyms
ValueSource
2-({[1-({2-[2-amino-3-(3-hydroxyphenyl)-N-methylpropanamido]-1-({[(2E,4R,5R)-4-hydroxy-5-(4-hydroxy-2-oxo-1,2-dihydropyrimidin-1-yl)oxolan-2-ylidene]methyl}-C-hydroxycarbonimidoyl)propyl}-C-hydroxycarbonimidoyl)-3-(methylsulfanyl)propyl]-C-hydroxycarbonimidoyl}amino)-3-(1H-indol-3-yl)propanoateGenerator
2-({[1-({2-[2-amino-3-(3-hydroxyphenyl)-N-methylpropanamido]-1-({[(2E,4R,5R)-4-hydroxy-5-(4-hydroxy-2-oxo-1,2-dihydropyrimidin-1-yl)oxolan-2-ylidene]methyl}-C-hydroxycarbonimidoyl)propyl}-C-hydroxycarbonimidoyl)-3-(methylsulphanyl)propyl]-C-hydroxycarbonimidoyl}amino)-3-(1H-indol-3-yl)propanoateGenerator
2-({[1-({2-[2-amino-3-(3-hydroxyphenyl)-N-methylpropanamido]-1-({[(2E,4R,5R)-4-hydroxy-5-(4-hydroxy-2-oxo-1,2-dihydropyrimidin-1-yl)oxolan-2-ylidene]methyl}-C-hydroxycarbonimidoyl)propyl}-C-hydroxycarbonimidoyl)-3-(methylsulphanyl)propyl]-C-hydroxycarbonimidoyl}amino)-3-(1H-indol-3-yl)propanoic acidGenerator
Chemical FormulaC40H49N9O11S
Average Mass863.9400 Da
Monoisotopic Mass863.32722 Da
IUPAC Name(2S)-2-({[(1R)-1-{[(1R)-2-[(2S)-2-amino-3-(3-hydroxyphenyl)-N-methylpropanamido]-1-({[(2E,4R,5R)-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)-4-hydroxyoxolan-2-ylidene]methyl}carbamoyl)propyl]carbamoyl}-3-(methylsulfanyl)propyl]carbamoyl}amino)-3-(1H-indol-3-yl)propanoic acid
Traditional Name(2S)-2-({[(1R)-1-{[(1R)-2-[(2S)-2-amino-3-(3-hydroxyphenyl)-N-methylpropanamido]-1-({[(2E,4R,5R)-5-(2,4-dioxo-3H-pyrimidin-1-yl)-4-hydroxyoxolan-2-ylidene]methyl}carbamoyl)propyl]carbamoyl}-3-(methylsulfanyl)propyl]carbamoyl}amino)-3-(1H-indol-3-yl)propanoic acid
CAS Registry NumberNot Available
SMILES
CSCCC(NC(=O)NC(CC1=CNC2=CC=CC=C12)C(O)=O)C(=O)NC(C(C)N(C)C(=O)C(N)CC1=CC(O)=CC=C1)C(=O)N\C=C1/C[C@@H](O)[C@@H](O1)N1C=CC(=O)NC1=O
InChI Identifier
InChI=1S/C40H49N9O11S/c1-21(48(2)36(55)27(41)16-22-7-6-8-24(50)15-22)33(35(54)43-20-25-18-31(51)37(60-25)49-13-11-32(52)46-40(49)59)47-34(53)29(12-14-61-3)44-39(58)45-30(38(56)57)17-23-19-42-28-10-5-4-9-26(23)28/h4-11,13,15,19-21,27,29-31,33,37,42,50-51H,12,14,16-18,41H2,1-3H3,(H,43,54)(H,47,53)(H,56,57)(H2,44,45,58)(H,46,52,59)/b25-20+/t21?,27?,29?,30?,31-,33?,37-/m1/s1
InChI KeyJTNZPPUDLUHMKK-OXOXDDDLSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces sp.NPAtlas
Chemical Taxonomy
Description Belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentDipeptides
Alternative Parents
Substituents
  • Alpha-dipeptide
  • Phenylalanine or derivatives
  • Methionine or derivatives
  • N-acyl-alpha amino acid or derivatives
  • N-carbamoyl-alpha-amino acid
  • N-carbamoyl-alpha-amino acid or derivatives
  • Alpha-amino acid amide
  • Indolyl carboxylic acid derivative
  • N-substituted-alpha-amino acid
  • Alpha-amino acid or derivatives
  • Amphetamine or derivatives
  • 3-alkylindole
  • Indole
  • Indole or derivatives
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Phenol
  • Pyrimidone
  • Aralkylamine
  • Benzenoid
  • Hydropyrimidine
  • Fatty amide
  • N-acyl-amine
  • Monocyclic benzene moiety
  • Pyrimidine
  • Fatty acyl
  • Substituted pyrrole
  • Heteroaromatic compound
  • Vinylogous amide
  • Tetrahydrofuran
  • Tertiary carboxylic acid amide
  • Pyrrole
  • Amino acid or derivatives
  • Carbonic acid derivative
  • Carboxamide group
  • Urea
  • Amino acid
  • Lactam
  • Secondary alcohol
  • Secondary carboxylic acid amide
  • Organoheterocyclic compound
  • Sulfenyl compound
  • Dialkylthioether
  • Thioether
  • Oxacycle
  • Azacycle
  • Monocarboxylic acid or derivatives
  • Carboxylic acid
  • Organic nitrogen compound
  • Organopnictogen compound
  • Organic oxide
  • Primary aliphatic amine
  • Hydrocarbon derivative
  • Carbonyl group
  • Organonitrogen compound
  • Organic oxygen compound
  • Organooxygen compound
  • Organosulfur compound
  • Alcohol
  • Primary amine
  • Amine
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.96ALOGPS
logP-3ChemAxon
logS-4.8ALOGPS
pKa (Strongest Acidic)3.52ChemAxon
pKa (Strongest Basic)7.96ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count12ChemAxon
Hydrogen Donor Count10ChemAxon
Polar Surface Area297.85 ŲChemAxon
Rotatable Bond Count18ChemAxon
Refractivity221.3 m³·mol⁻¹ChemAxon
Polarizability87.64 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA001954
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID28482389
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound57395472
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Xie Y, Chen R, Si S, Sun C, Xu H: A new nucleosidyl-peptide antibiotic, sansanmycin. J Antibiot (Tokyo). 2007 Feb;60(2):158-61. doi: 10.1038/ja.2007.16. [PubMed:17420567 ]
  2. Shi Y, Wang X, He N, Xie Y, Hong B: Rescrutiny of the sansanmycin biosynthetic gene cluster leads to the discovery of a novel sansanmycin analogue with more potency against Mycobacterium tuberculosis. J Antibiot (Tokyo). 2019 Oct;72(10):769-774. doi: 10.1038/s41429-019-0210-z. Epub 2019 Jul 24. [PubMed:31341273 ]
  3. Niro G, Weck SC, Ducho C: Merging Natural Products: Muraymycin-Sansanmycin Hybrid Structures as Novel Scaffolds for Potential Antibacterial Agents. Chemistry. 2020 Dec 15;26(70):16875-16887. doi: 10.1002/chem.202003387. Epub 2020 Nov 16. [PubMed:32897546 ]
  4. Jiang ZB, Ren WC, Shi YY, Li XX, Lei X, Fan JH, Zhang C, Gu RJ, Wang LF, Xie YY, Hong B: Structure-based manual screening and automatic networking for systematically exploring sansanmycin analogues using high performance liquid chromatography tandem mass spectroscopy. J Pharm Biomed Anal. 2018 Sep 5;158:94-105. doi: 10.1016/j.jpba.2018.05.024. Epub 2018 May 18. [PubMed:29885606 ]
  5. Wang SS, Zhang NN, He N, Guo WQ, Lei X, Cai Q, Hong B, Xie YY: Exploiting Substrate Diversity of NRPS Led to the Generation of New Sansanmycin Analogs. Nat Prod Commun. 2017 May;12(5):781-783. [PubMed:30496665 ]