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Record Information
Version1.0
Created at2020-12-09 03:51:51 UTC
Updated at2021-07-15 16:56:14 UTC
NP-MRD IDNP0006945
Secondary Accession NumbersNone
Natural Product Identification
Common NameLaxaphycin B
Provided ByNPAtlasNPAtlas Logo
Description Laxaphycin B is found in Lyngbya majuscula. It was first documented in 2005 (PMID: 15875779). Based on a literature review a small amount of articles have been published on Laxaphycin B (PMID: 17323939) (PMID: 33914531) (PMID: 26690181) (PMID: 23855751).
Structure
Thumb
Synonyms
ValueSource
3-[(6S,9R,13S,16S,22R,31R,34S,39AS)-28-[(2S)-butan-2-yl]-9-heptyl-1,4,7,11,14,17,20,23,29,32-decahydroxy-31-[(R)-hydroxy(C-hydroxycarbonimidoyl)methyl]-22-(1-hydroxy-2-methylpropyl)-16-[(1S)-1-hydroxy-2-methylpropyl]-6-(1-hydroxyethyl)-34-[(1R)-1-hydroxyethyl]-19,27-dimethyl-3-(2-methylpropyl)-26,35-dioxo-13-(propan-2-yl)-3H,6H,9H,10H,13H,16H,19H,22H,25H,26H,27H,28H,31H,34H,35H,37H,38H,39H,39ah-pyrrolo[2,1-i]1,4,7,10,13,16,19,22,25,28,31,34-dodecaazacycloheptatriacontan-25-yl]propanimidateGenerator
Chemical FormulaC65H114N14O19
Average Mass1395.7060 Da
Monoisotopic Mass1394.83847 Da
IUPAC Name3-[(3R,6S,9R,13S,16S,19R,22R,25R,31R,34S,39aS)-28-[(2S)-butan-2-yl]-31-[(R)-carbamoyl(hydroxy)methyl]-9-heptyl-22-[(1R)-1-hydroxy-2-methylpropyl]-16-[(1S)-1-hydroxy-2-methylpropyl]-6,34-bis[(1R)-1-hydroxyethyl]-19,27-dimethyl-3-(2-methylpropyl)-1,4,7,11,14,17,20,23,26,29,32,35-dodecaoxo-13-(propan-2-yl)-octatriacontahydro-1H-pyrrolo[2,1-i]1,4,7,10,13,16,19,22,25,28,31,34-dodecaazacycloheptatriacontan-25-yl]propanamide
Traditional Name3-[(3R,6S,9R,13S,16S,19R,22R,25R,31R,34S,39aS)-28-[(2S)-butan-2-yl]-31-[(R)-carbamoyl(hydroxy)methyl]-9-heptyl-22-[(1R)-1-hydroxy-2-methylpropyl]-16-[(1S)-1-hydroxy-2-methylpropyl]-6,34-bis[(1R)-1-hydroxyethyl]-13-isopropyl-19,27-dimethyl-3-(2-methylpropyl)-1,4,7,11,14,17,20,23,26,29,32,35-dodecaoxo-hexacosahydropyrrolo[2,1-i]1,4,7,10,13,16,19,22,25,28,31,34-dodecaazacycloheptatriacontan-25-yl]propanamide
CAS Registry NumberNot Available
SMILES
CCCCCCC[C@@H]1CC(=O)N[C@@H](C(C)C)C(=O)N[C@@H]([C@@H](O)C(C)C)C(=O)NC(C)C(=O)N[C@H](C(O)C(C)C)C(=O)NC(CCC(N)=O)C(=O)N(C)C([C@@H](C)CC)C(=O)N[C@H]([C@@H](O)C(N)=O)C(=O)N[C@@H]([C@@H](C)O)C(=O)N2CCC[C@H]2C(=O)NC(CC(C)C)C(=O)N[C@@H](C(C)O)C(=O)N1
InChI Identifier
InChI=1S/C65H114N14O19/c1-16-18-19-20-21-23-38-29-43(83)72-44(31(5)6)58(91)76-47(51(84)32(7)8)60(93)68-35(12)55(88)75-48(52(85)33(9)10)61(94)70-39(25-26-42(66)82)64(97)78(15)50(34(11)17-2)63(96)77-49(53(86)54(67)87)62(95)74-46(37(14)81)65(98)79-27-22-24-41(79)57(90)71-40(28-30(3)4)56(89)73-45(36(13)80)59(92)69-38/h30-41,44-53,80-81,84-86H,16-29H2,1-15H3,(H2,66,82)(H2,67,87)(H,68,93)(H,69,92)(H,70,94)(H,71,90)(H,72,83)(H,73,89)(H,74,95)(H,75,88)(H,76,91)(H,77,96)/t34-,35?,36?,37+,38+,39?,40?,41-,44-,45-,46-,47-,48+,49+,50?,51-,52?,53+/m0/s1
InChI KeyURYPPVMQQUERGK-IRBJMCNESA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Lyngbya majusculaNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.98ALOGPS
logP-3.7ChemAxon
logS-4.2ALOGPS
pKa (Strongest Acidic)11.09ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count19ChemAxon
Hydrogen Donor Count17ChemAxon
Polar Surface Area518.95 ŲChemAxon
Rotatable Bond Count22ChemAxon
Refractivity352.22 m³·mol⁻¹ChemAxon
Polarizability148.65 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA000074
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID17214504
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound22833263
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Bonnard I, Rolland M, Salmon JM, Debiton E, Barthomeuf C, Banaigs B: Total structure and inhibition of tumor cell proliferation of laxaphycins. J Med Chem. 2007 Mar 22;50(6):1266-79. doi: 10.1021/jm061307x. Epub 2007 Feb 27. [PubMed:17323939 ]
  2. Darcel L, Bornancin L, Raviglione D, Bonnard I, Mills SC, Saez-Vasquez J, Banaigs B, Inguimbert N: d-Peptidase Activity in a Marine Mollusk Detoxifies a Nonribosomal Cyclic Lipopeptide: An Ecological Model to Study Antibiotic Resistance. J Med Chem. 2021 May 13;64(9):6198-6208. doi: 10.1021/acs.jmedchem.1c00249. Epub 2021 Apr 29. [PubMed:33914531 ]
  3. Bornancin L, Boyaud F, Mahiout Z, Bonnard I, Mills SC, Banaigs B, Inguimbert N: Isolation and Synthesis of Laxaphycin B-Type Peptides: A Case Study and Clues to Their Biosynthesis. Mar Drugs. 2015 Dec 5;13(12):7285-300. doi: 10.3390/md13127065. [PubMed:26690181 ]
  4. Boyaud F, Mahiout Z, Lenoir C, Tang S, Wdzieczak-Bakala J, Witczak A, Bonnard I, Banaigs B, Ye T, Inguimbert N: First total synthesis and stereochemical revision of laxaphycin B and its extension to lyngbyacyclamide A. Org Lett. 2013 Aug 2;15(15):3898-901. doi: 10.1021/ol401645m. Epub 2013 Jul 15. [PubMed:23855751 ]
  5. Gbankoto A, Vigo J, Dramane K, Banaigs B, Aina E, Salmon JM: Cytotoxic effect of Laxaphycins A and B on human lymphoblastic cells (CCRF-CEM) using digitised videomicrofluorometry. In Vivo. 2005 May-Jun;19(3):577-82. [PubMed:15875779 ]