NP-MRD: Showing NP-Card for Monodictysin C (NP0006903)

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Record Information

Version

2.0

Created at

2020-12-09 03:49:00 UTC

Updated at

2021-07-15 16:56:07 UTC

NP-MRD ID

NP0006903

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Monodictysin C

Provided By

NPAtlas

Description

MONODICTYSIN C belongs to the class of organic compounds known as xanthones. These are polycyclic aromatic compounds containing a xanthene moiety conjugated to a ketone group at carbon 9. Xanthene is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring. MONODICTYSIN C is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. Monodictysin C is found in Monodictys putredinis. Based on a literature review very few articles have been published on MONODICTYSIN C.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118363D          

 42 44  0  0  0  0            999 V2000
    5.3217   -1.6786   -0.6596 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1429   -0.3105   -0.4618 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8950    0.3012   -0.3800 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7535    1.6548   -0.1841 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4959    2.2641   -0.1028 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3451    3.6004    0.0916 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4052    1.4509   -0.2274 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5656    0.0729   -0.4266 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7923   -0.5112   -0.5044 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4174   -0.6643   -0.5404 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7696   -0.3940    0.2145 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4751   -0.9268    1.6189 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8634   -1.1795   -0.4513 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5034   -2.5316   -0.3699 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2334   -0.9108    0.0471 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.6499   -1.7804    1.2124 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4330    0.5524    0.3165 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3813    1.4098   -0.3218 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3389    1.3415   -1.6890 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0502    1.0693    0.3375 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0354    1.9350   -0.1712 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1957    3.0847   -0.5583 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4011   -1.8535   -0.8712 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7509   -2.0880   -1.5185 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9869   -2.2409    0.2403 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6178    2.2905   -0.0869 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5875    4.1949    0.1813 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9205   -1.5813   -0.6591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0792   -0.4162    2.3848 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5904   -0.6107    1.8262 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4785   -2.0148    1.6665 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8164   -0.9315   -1.5454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8391   -2.9945   -1.1637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9487   -1.1725   -0.7889 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5790   -1.3612    1.6330 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8617   -1.9596    1.9411 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9205   -2.7864    0.7848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3841    0.7185    1.4096 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4214    0.8989   -0.0347 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6015    2.4662   -0.0287 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0104    2.2193   -2.0308 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1907    1.3734    1.4184 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  1  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
  9  3  1  0  0  0  0
 20 11  1  0  0  0  0
 21  7  1  0  0  0  0
  1 23  1  0  0  0  0
  1 24  1  0  0  0  0
  1 25  1  0  0  0  0
  4 26  1  0  0  0  0
  6 27  1  0  0  0  0
  9 28  1  0  0  0  0
 12 29  1  0  0  0  0
 12 30  1  0  0  0  0
 12 31  1  0  0  0  0
 13 32  1  6  0  0  0
 14 33  1  0  0  0  0
 15 34  1  6  0  0  0
 16 35  1  0  0  0  0
 16 36  1  0  0  0  0
 16 37  1  0  0  0  0
 17 38  1  0  0  0  0
 17 39  1  0  0  0  0
 18 40  1  6  0  0  0
 19 41  1  0  0  0  0
 20 42  1  1  0  0  0
M  END

     RDKit          3D

 42 44  0  0  0  0  0  0  0  0999 V2000
    5.3217   -1.6786   -0.6596 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1429   -0.3105   -0.4618 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8950    0.3012   -0.3800 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7535    1.6548   -0.1841 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4959    2.2641   -0.1028 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3451    3.6004    0.0916 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4052    1.4509   -0.2274 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5656    0.0729   -0.4266 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7923   -0.5112   -0.5044 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4174   -0.6643   -0.5404 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7696   -0.3940    0.2145 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4751   -0.9268    1.6189 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8634   -1.1795   -0.4513 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5034   -2.5316   -0.3699 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2334   -0.9108    0.0471 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.6499   -1.7804    1.2124 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4330    0.5524    0.3165 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3813    1.4098   -0.3218 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3389    1.3415   -1.6890 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0502    1.0693    0.3375 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0354    1.9350   -0.1712 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1957    3.0847   -0.5583 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4011   -1.8535   -0.8712 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7509   -2.0880   -1.5185 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9869   -2.2409    0.2403 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6178    2.2905   -0.0869 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5875    4.1949    0.1813 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9205   -1.5813   -0.6591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0792   -0.4162    2.3848 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5904   -0.6107    1.8262 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4785   -2.0148    1.6665 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8164   -0.9315   -1.5454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8391   -2.9945   -1.1637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9487   -1.1725   -0.7889 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5790   -1.3612    1.6330 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8617   -1.9596    1.9411 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9205   -2.7864    0.7848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3841    0.7185    1.4096 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4214    0.8989   -0.0347 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6015    2.4662   -0.0287 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0104    2.2193   -2.0308 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1907    1.3734    1.4184 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  5  7  2  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
 10 11  1  0
 11 12  1  1
 11 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 21 22  2  0
  9  3  1  0
 20 11  1  0
 21  7  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  4 26  1  0
  6 27  1  0
  9 28  1  0
 12 29  1  0
 12 30  1  0
 12 31  1  0
 13 32  1  6
 14 33  1  0
 15 34  1  6
 16 35  1  0
 16 36  1  0
 16 37  1  0
 17 38  1  0
 17 39  1  0
 18 40  1  6
 19 41  1  0
 20 42  1  1
M  END


  Mrv1652306242118363D          

 42 44  0  0  0  0            999 V2000
    5.3217   -1.6786   -0.6596 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1429   -0.3105   -0.4618 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8950    0.3012   -0.3800 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7535    1.6548   -0.1841 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4959    2.2641   -0.1028 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3451    3.6004    0.0916 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4052    1.4509   -0.2274 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5656    0.0729   -0.4266 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7923   -0.5112   -0.5044 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4174   -0.6643   -0.5404 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7696   -0.3940    0.2145 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4751   -0.9268    1.6189 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8634   -1.1795   -0.4513 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5034   -2.5316   -0.3699 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2334   -0.9108    0.0471 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.6499   -1.7804    1.2124 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4330    0.5524    0.3165 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3813    1.4098   -0.3218 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3389    1.3415   -1.6890 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0502    1.0693    0.3375 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0354    1.9350   -0.1712 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1957    3.0847   -0.5583 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4011   -1.8535   -0.8712 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7509   -2.0880   -1.5185 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9869   -2.2409    0.2403 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6178    2.2905   -0.0869 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5875    4.1949    0.1813 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9205   -1.5813   -0.6591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0792   -0.4162    2.3848 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5904   -0.6107    1.8262 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4785   -2.0148    1.6665 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8164   -0.9315   -1.5454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8391   -2.9945   -1.1637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9487   -1.1725   -0.7889 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5790   -1.3612    1.6330 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8617   -1.9596    1.9411 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9205   -2.7864    0.7848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3841    0.7185    1.4096 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4214    0.8989   -0.0347 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6015    2.4662   -0.0287 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0104    2.2193   -2.0308 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1907    1.3734    1.4184 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  1  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
  9  3  1  0  0  0  0
 20 11  1  0  0  0  0
 21  7  1  0  0  0  0
  1 23  1  0  0  0  0
  1 24  1  0  0  0  0
  1 25  1  0  0  0  0
  4 26  1  0  0  0  0
  6 27  1  0  0  0  0
  9 28  1  0  0  0  0
 12 29  1  0  0  0  0
 12 30  1  0  0  0  0
 12 31  1  0  0  0  0
 13 32  1  6  0  0  0
 14 33  1  0  0  0  0
 15 34  1  6  0  0  0
 16 35  1  0  0  0  0
 16 36  1  0  0  0  0
 16 37  1  0  0  0  0
 17 38  1  0  0  0  0
 17 39  1  0  0  0  0
 18 40  1  6  0  0  0
 19 41  1  0  0  0  0
 20 42  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0006903

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C2C(O[C@]3(C([H])([H])[H])[C@@]([H])(O[H])[C@@]([H])(C([H])([H])[H])C([H])([H])[C@]([H])(O[H])[C@]3([H])C2=O)=C([H])C(OC([H])([H])[H])=C1[H]

> <INCHI_IDENTIFIER>
InChI=1S/C16H20O6/c1-7-4-10(18)13-14(19)12-9(17)5-8(21-3)6-11(12)22-16(13,2)15(7)20/h5-7,10,13,15,17-18,20H,4H2,1-3H3/t7-,10-,13+,15-,16-/m0/s1

> <INCHI_KEY>
PIJNYABFKNAKHE-YZKPXJPOSA-N

> <FORMULA>
C16H20O6

> <MOLECULAR_WEIGHT>
308.33

> <EXACT_MASS>
308.125988364

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
42

> <JCHEM_AVERAGE_POLARIZABILITY>
31.496369329980276

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,3S,4S,4aS,9aS)-1,4,8-trihydroxy-6-methoxy-3,4a-dimethyl-2,3,4,4a,9,9a-hexahydro-1H-xanthen-9-one

> <ALOGPS_LOGP>
1.08

> <JCHEM_LOGP>
1.303088521666667

> <ALOGPS_LOGS>
-1.67

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.472959111133402

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.665425022659441

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9497507756903794

> <JCHEM_POLAR_SURFACE_AREA>
96.22

> <JCHEM_REFRACTIVITY>
77.81129999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.62e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,3S,4S,4aS,9aS)-1,4,8-trihydroxy-6-methoxy-3,4a-dimethyl-2,3,4,9a-tetrahydro-1H-xanthen-9-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 42 44  0  0  0  0  0  0  0  0999 V2000
    5.3217   -1.6786   -0.6596 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1429   -0.3105   -0.4618 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8950    0.3012   -0.3800 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7535    1.6548   -0.1841 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4959    2.2641   -0.1028 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3451    3.6004    0.0916 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4052    1.4509   -0.2274 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5656    0.0729   -0.4266 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7923   -0.5112   -0.5044 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4174   -0.6643   -0.5404 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7696   -0.3940    0.2145 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4751   -0.9268    1.6189 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8634   -1.1795   -0.4513 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5034   -2.5316   -0.3699 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2334   -0.9108    0.0471 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.6499   -1.7804    1.2124 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4330    0.5524    0.3165 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3813    1.4098   -0.3218 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3389    1.3415   -1.6890 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0502    1.0693    0.3375 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0354    1.9350   -0.1712 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1957    3.0847   -0.5583 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4011   -1.8535   -0.8712 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7509   -2.0880   -1.5185 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9869   -2.2409    0.2403 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6178    2.2905   -0.0869 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5875    4.1949    0.1813 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9205   -1.5813   -0.6591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0792   -0.4162    2.3848 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5904   -0.6107    1.8262 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4785   -2.0148    1.6665 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8164   -0.9315   -1.5454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8391   -2.9945   -1.1637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9487   -1.1725   -0.7889 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5790   -1.3612    1.6330 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8617   -1.9596    1.9411 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9205   -2.7864    0.7848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3841    0.7185    1.4096 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4214    0.8989   -0.0347 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6015    2.4662   -0.0287 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0104    2.2193   -2.0308 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1907    1.3734    1.4184 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  5  7  2  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
 10 11  1  0
 11 12  1  1
 11 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 21 22  2  0
  9  3  1  0
 20 11  1  0
 21  7  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  4 26  1  0
  6 27  1  0
  9 28  1  0
 12 29  1  0
 12 30  1  0
 12 31  1  0
 13 32  1  6
 14 33  1  0
 15 34  1  6
 16 35  1  0
 16 36  1  0
 16 37  1  0
 17 38  1  0
 17 39  1  0
 18 40  1  6
 19 41  1  0
 20 42  1  1
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       5.322  -1.679  -0.660  0.00  0.00           C+0
HETATM    2  O   UNK     0       5.143  -0.311  -0.462  0.00  0.00           O+0
HETATM    3  C   UNK     0       3.895   0.301  -0.380  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.753   1.655  -0.184  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.496   2.264  -0.103  0.00  0.00           C+0
HETATM    6  O   UNK     0       2.345   3.600   0.092  0.00  0.00           O+0
HETATM    7  C   UNK     0       1.405   1.451  -0.227  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.566   0.073  -0.427  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.792  -0.511  -0.504  0.00  0.00           C+0
HETATM   10  O   UNK     0       0.417  -0.664  -0.540  0.00  0.00           O+0
HETATM   11  C   UNK     0      -0.770  -0.394   0.215  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.475  -0.927   1.619  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.863  -1.180  -0.451  0.00  0.00           C+0
HETATM   14  O   UNK     0      -1.503  -2.532  -0.370  0.00  0.00           O+0
HETATM   15  C   UNK     0      -3.233  -0.911   0.047  0.00  0.00           C+0
HETATM   16  C   UNK     0      -3.650  -1.780   1.212  0.00  0.00           C+0
HETATM   17  C   UNK     0      -3.433   0.552   0.317  0.00  0.00           C+0
HETATM   18  C   UNK     0      -2.381   1.410  -0.322  0.00  0.00           C+0
HETATM   19  O   UNK     0      -2.339   1.341  -1.689  0.00  0.00           O+0
HETATM   20  C   UNK     0      -1.050   1.069   0.338  0.00  0.00           C+0
HETATM   21  C   UNK     0       0.035   1.935  -0.171  0.00  0.00           C+0
HETATM   22  O   UNK     0      -0.196   3.085  -0.558  0.00  0.00           O+0
HETATM   23  H   UNK     0       6.401  -1.853  -0.871  0.00  0.00           H+0
HETATM   24  H   UNK     0       4.751  -2.088  -1.519  0.00  0.00           H+0
HETATM   25  H   UNK     0       4.987  -2.241   0.240  0.00  0.00           H+0
HETATM   26  H   UNK     0       4.618   2.291  -0.087  0.00  0.00           H+0
HETATM   27  H   UNK     0       1.587   4.195   0.181  0.00  0.00           H+0
HETATM   28  H   UNK     0       2.921  -1.581  -0.659  0.00  0.00           H+0
HETATM   29  H   UNK     0      -1.079  -0.416   2.385  0.00  0.00           H+0
HETATM   30  H   UNK     0       0.590  -0.611   1.826  0.00  0.00           H+0
HETATM   31  H   UNK     0      -0.479  -2.015   1.667  0.00  0.00           H+0
HETATM   32  H   UNK     0      -1.816  -0.932  -1.545  0.00  0.00           H+0
HETATM   33  H   UNK     0      -1.839  -2.994  -1.164  0.00  0.00           H+0
HETATM   34  H   UNK     0      -3.949  -1.173  -0.789  0.00  0.00           H+0
HETATM   35  H   UNK     0      -4.579  -1.361   1.633  0.00  0.00           H+0
HETATM   36  H   UNK     0      -2.862  -1.960   1.941  0.00  0.00           H+0
HETATM   37  H   UNK     0      -3.921  -2.786   0.785  0.00  0.00           H+0
HETATM   38  H   UNK     0      -3.384   0.719   1.410  0.00  0.00           H+0
HETATM   39  H   UNK     0      -4.421   0.899  -0.035  0.00  0.00           H+0
HETATM   40  H   UNK     0      -2.602   2.466  -0.029  0.00  0.00           H+0
HETATM   41  H   UNK     0      -2.010   2.219  -2.031  0.00  0.00           H+0
HETATM   42  H   UNK     0      -1.191   1.373   1.418  0.00  0.00           H+0
CONECT    1    2   23   24   25                                             
CONECT    2    1    3                                                       
CONECT    3    2    4    9                                                  
CONECT    4    3    5   26                                                  
CONECT    5    4    6    7                                                  
CONECT    6    5   27                                                       
CONECT    7    5    8   21                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8    3   28                                                  
CONECT   10    8   11                                                       
CONECT   11   10   12   13   20                                             
CONECT   12   11   29   30   31                                             
CONECT   13   11   14   15   32                                             
CONECT   14   13   33                                                       
CONECT   15   13   16   17   34                                             
CONECT   16   15   35   36   37                                             
CONECT   17   15   18   38   39                                             
CONECT   18   17   19   20   40                                             
CONECT   19   18   41                                                       
CONECT   20   18   21   11   42                                             
CONECT   21   20   22    7                                                  
CONECT   22   21                                                            
CONECT   23    1                                                            
CONECT   24    1                                                            
CONECT   25    1                                                            
CONECT   26    4                                                            
CONECT   27    6                                                            
CONECT   28    9                                                            
CONECT   29   12                                                            
CONECT   30   12                                                            
CONECT   31   12                                                            
CONECT   32   13                                                            
CONECT   33   14                                                            
CONECT   34   15                                                            
CONECT   35   16                                                            
CONECT   36   16                                                            
CONECT   37   16                                                            
CONECT   38   17                                                            
CONECT   39   17                                                            
CONECT   40   18                                                            
CONECT   41   19                                                            
CONECT   42   20                                                            
MASTER        0    0    0    0    0    0    0    0   42    0   88    0
END

RDKit          3D

42 44  0  0  0  0  0  0  0  0999 V2000
    5.3217   -1.6786   -0.6596 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1429   -0.3105   -0.4618 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8950    0.3012   -0.3800 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7535    1.6548   -0.1841 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4959    2.2641   -0.1028 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3451    3.6004    0.0916 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4052    1.4509   -0.2274 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5656    0.0729   -0.4266 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7923   -0.5112   -0.5044 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4174   -0.6643   -0.5404 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7696   -0.3940    0.2145 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4751   -0.9268    1.6189 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8634   -1.1795   -0.4513 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5034   -2.5316   -0.3699 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2334   -0.9108    0.0471 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.6499   -1.7804    1.2124 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4330    0.5524    0.3165 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3813    1.4098   -0.3218 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3389    1.3415   -1.6890 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0502    1.0693    0.3375 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0354    1.9350   -0.1712 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1957    3.0847   -0.5583 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4011   -1.8535   -0.8712 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7509   -2.0880   -1.5185 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9869   -2.2409    0.2403 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6178    2.2905   -0.0869 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5875    4.1949    0.1813 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9205   -1.5813   -0.6591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0792   -0.4162    2.3848 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5904   -0.6107    1.8262 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4785   -2.0148    1.6665 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8164   -0.9315   -1.5454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8391   -2.9945   -1.1637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9487   -1.1725   -0.7889 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5790   -1.3612    1.6330 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8617   -1.9596    1.9411 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9205   -2.7864    0.7848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3841    0.7185    1.4096 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4214    0.8989   -0.0347 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6015    2.4662   -0.0287 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0104    2.2193   -2.0308 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1907    1.3734    1.4184 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  5  7  2  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
 10 11  1  0
 11 12  1  1
 11 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 21 22  2  0
  9  3  1  0
 20 11  1  0
 21  7  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  4 26  1  0
  6 27  1  0
  9 28  1  0
 12 29  1  0
 12 30  1  0
 12 31  1  0
 13 32  1  6
 14 33  1  0
 15 34  1  6
 16 35  1  0
 16 36  1  0
 16 37  1  0
 17 38  1  0
 17 39  1  0
 18 40  1  6
 19 41  1  0
 20 42  1  1
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₁₆H₂₀O₆

Average Mass

308.3300 Da

Monoisotopic Mass

308.12599 Da

IUPAC Name

(1S,3S,4S,4aS,9aS)-1,4,8-trihydroxy-6-methoxy-3,4a-dimethyl-2,3,4,4a,9,9a-hexahydro-1H-xanthen-9-one

Traditional Name

(1S,3S,4S,4aS,9aS)-1,4,8-trihydroxy-6-methoxy-3,4a-dimethyl-2,3,4,9a-tetrahydro-1H-xanthen-9-one

CAS Registry Number

Not Available

SMILES

COC1=CC(O)=C2C(=O)[C@H]3[C@@H](O)C[C@H](C)[C@H](O)[C@@]3(C)OC2=C1

InChI Identifier

InChI=1S/C16H20O6/c1-7-4-10(18)13-14(19)12-9(17)5-8(21-3)6-11(12)22-16(13,2)15(7)20/h5-7,10,13,15,17-18,20H,4H2,1-3H3/t7-,10-,13+,15-,16-/m0/s1

InChI Key

PIJNYABFKNAKHE-YZKPXJPOSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Monodictys putredinis	NPAtlas	17291041

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as xanthones. These are polycyclic aromatic compounds containing a xanthene moiety conjugated to a ketone group at carbon 9. Xanthene is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzopyrans

Sub Class

1-benzopyrans

Direct Parent

Xanthones

Alternative Parents

Substituents

Xanthone
Chromone
Anisole
Aryl alkyl ketone
Aryl ketone
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Benzenoid
Cyclic alcohol
Vinylogous acid
Secondary alcohol
Ketone
Polyol
Ether
Oxacycle
Organooxygen compound
Alcohol
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

aromatic ether (CHEBI:66399 )
secondary alcohol (CHEBI:66399 )
phenols (CHEBI:66399 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.08	ALOGPS
logP	1.3	ChemAxon
logS	-1.7	ALOGPS
pKa (Strongest Acidic)	8.67	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	96.22 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	77.81 m³·mol⁻¹	ChemAxon
Polarizability	31.5 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA007881

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

17214438

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

16114920

PDB ID

Not Available

ChEBI ID

66399

Good Scents ID

Not Available

References

General References

Showing NP-Card for Monodictysin C (NP0006903)

MOL for NP0006903 (Monodictysin C)

3D MOL for NP0006903 (Monodictysin C)

3D SDF for NP0006903 (Monodictysin C)

3D-SDF for NP0006903 (Monodictysin C)

PDB for NP0006903 (Monodictysin C)

3D PDB for NP0006903 (Monodictysin C)

SMILES for NP0006903 (Monodictysin C)

INCHI for NP0006903 (Monodictysin C)

Structure for NP0006903 (Monodictysin C)

3D Structure for NP0006903 (Monodictysin C)