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Record Information
Version1.0
Created at2020-12-09 03:33:46 UTC
Updated at2021-07-15 16:55:14 UTC
NP-MRD IDNP0006590
Secondary Accession NumbersNone
Natural Product Identification
Common NameCyclothiazomycin b1
Provided ByNPAtlasNPAtlas Logo
DescriptionCyclothiazomycin B1 belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds. Cyclothiazomycin b1 is found in Streptomyces. It was first documented in 2006 (PMID: 17010619). Based on a literature review very few articles have been published on Cyclothiazomycin B1.
Structure
Thumb
Synonyms
ValueSource
(12S,27S,30R,36S,42Z,48S,51S,55S,62Z)-36-(3-Carbamimidamidopropyl)-42,62-diethylidene-13,28,34,37,40,49,53,60,63-nonahydroxy-55-[(C-hydroxycarbonimidoyl)methyl]-33,51-dimethyl-15-methylidene-43-oxo-6,10,17,21,25,32,57-heptathia-14,29,35,38,41,44,50,54,61,64,65,66,67,68,69,70,71-heptadecaazadecacyclo[31.19.12.1,.1,.1,.1,.1,.1,.1,.0,]henheptaconta-1(52),2,4(66),5(71),7,9(70),13,16(69),18,20(68),22,24(67),28,34,37,40,49,53,56(65),60,63-henicosaene-30-carboxylateGenerator
Chemical FormulaC61H69N21O13S7
Average Mass1528.7800 Da
Monoisotopic Mass1527.34287 Da
IUPAC Name(12S,27S,30R,33R,36S,42Z,48S,51S,55S,59R,62Z)-36-(3-carbamimidamidopropyl)-55-(carbamoylmethyl)-42,62-diethylidene-33,51-dimethyl-15-methylidene-13,28,34,37,40,43,49,53,60,63-decaoxo-6,10,17,21,25,32,57-heptathia-14,29,35,38,41,44,50,54,61,64,65,66,67,68,69,70,71-heptadecaazadecacyclo[31.19.12.1^{4,52}.1^{5,8}.1^{9,12}.1^{16,19}.1^{20,23}.1^{24,27}.1^{56,59}.0^{44,48}]henheptaconta-1(52),2,4(66),5(71),7,9(70),16(69),18,20(68),22,24(67),56(65)-dodecaene-30-carboxylic acid
Traditional Name(12S,27S,30R,33R,36S,42Z,48S,51S,55S,59R,62Z)-36-(3-carbamimidamidopropyl)-55-(carbamoylmethyl)-42,62-diethylidene-33,51-dimethyl-15-methylidene-13,28,34,37,40,43,49,53,60,63-decaoxo-6,10,17,21,25,32,57-heptathia-14,29,35,38,41,44,50,54,61,64,65,66,67,68,69,70,71-heptadecaazadecacyclo[31.19.12.1^{4,52}.1^{5,8}.1^{9,12}.1^{16,19}.1^{20,23}.1^{24,27}.1^{56,59}.0^{44,48}]henheptaconta-1(52),2,4(66),5(71),7,9(70),16(69),18,20(68),22,24(67),56(65)-dodecaene-30-carboxylic acid
CAS Registry NumberNot Available
SMILES
C\C=C1/NC(=O)C2CSC(=N2)[C@H](CC(N)=O)NC(=O)C2=C3N=C(C=C2)C2=NC(=CS2)C2=N[C@H](CS2)C(=O)NC(=C)C2=NC(=CS2)C2=NC(=CS2)C2=N[C@H](CS2)C(=O)N[C@@H](CSC(C)(NC1=O)C(=O)N[C@@H](CCCNC(N)=N)C(=O)NCC(=O)N\C(=C/C)C(=O)N1CCC[C@H]1C(=O)N[C@H]3C)C(O)=O
InChI Identifier
InChI=1S/C61H69N21O13S7/c1-6-28-49(90)81-61(5)59(95)80-30(10-8-14-65-60(63)64)45(86)66-17-42(84)69-29(7-2)57(92)82-15-9-11-40(82)50(91)67-25(3)43-27(44(85)72-32(16-41(62)83)53-74-34(19-97-53)47(88)71-28)12-13-31(70-43)52-78-37(22-100-52)54-75-33(18-98-54)46(87)68-26(4)51-77-36(21-96-51)56-79-38(23-101-56)55-76-35(20-99-55)48(89)73-39(24-102-61)58(93)94/h6-7,12-13,21-23,25,30,32-35,39-40H,4,8-11,14-20,24H2,1-3,5H3,(H2,62,83)(H,66,86)(H,67,91)(H,68,87)(H,69,84)(H,71,88)(H,72,85)(H,73,89)(H,80,95)(H,81,90)(H,93,94)(H4,63,64,65)/b28-6-,29-7-/t25-,30-,32-,33+,34?,35+,39-,40-,61?/m0/s1
InChI KeyGMFKDKZZMAPRGJ-GLERVACHSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesNPAtlas
Chemical Taxonomy
Description Belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentOligopeptides
Alternative Parents
Substituents
  • Alpha-oligopeptide
  • Cyclic alpha peptide
  • Beta amino acid or derivatives
  • Alpha-amino acid or derivatives
  • Pyridine
  • Imidothiolactone
  • Azole
  • Pyrrolidine
  • Tertiary carboxylic acid amide
  • Thiazole
  • Meta-thiazoline
  • Heteroaromatic compound
  • Carboxamide group
  • Secondary carboxylic acid amide
  • Primary carboxylic acid amide
  • Lactam
  • Guanidine
  • Carboximidamide
  • Hemithioaminal
  • Thioether
  • Azacycle
  • Organoheterocyclic compound
  • Dialkylthioether
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Carboxylic acid
  • Monocarboxylic acid or derivatives
  • Carbonyl group
  • Imine
  • Organic oxide
  • Organonitrogen compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organic nitrogen compound
  • Organic oxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.27ALOGPS
logP-3.6ChemAxon
logS-5ALOGPS
pKa (Strongest Acidic)3.37ChemAxon
pKa (Strongest Basic)11.22ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count23ChemAxon
Hydrogen Donor Count14ChemAxon
Polar Surface Area513.14 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity412.09 m³·mol⁻¹ChemAxon
Polarizability153.37 ųChemAxon
Number of Rings10ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA009917
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID26609241
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound56682060
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Hashimoto M, Murakami T, Funahashi K, Tokunaga T, Nihei K, Okuno T, Kimura T, Naoki H, Himeno H: An RNA polymerase inhibitor, cyclothiazomycin B1, and its isomer. Bioorg Med Chem. 2006 Dec 15;14(24):8259-70. doi: 10.1016/j.bmc.2006.09.006. Epub 2006 Sep 28. [PubMed:17010619 ]