NP-MRD: Showing NP-Card for (2S,3R,4R)-2-(3,4-Dihydroxyphenyl)oxolane-3,4-diol (NP0006550)

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Record Information

Version

2.0

Created at

2020-12-09 03:32:03 UTC

Updated at

2021-07-15 16:55:08 UTC

NP-MRD ID

NP0006550

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2S,3R,4R)-2-(3,4-Dihydroxyphenyl)oxolane-3,4-diol

Provided By

NPAtlas

Description

(2S,3R,4R)-2-(3,4-dihydroxyphenyl)oxolane-3,4-diol belongs to the class of organic compounds known as phenolic glycosides. These are organic compounds containing a phenolic structure attached to a glycosyl moiety. Some examples of phenolic structures include lignans, and flavonoids. Among the sugar units found in natural glycosides are D-glucose, L-Fructose, and L rhamnose. (2S,3R,4R)-2-(3,4-Dihydroxyphenyl)oxolane-3,4-diol is found in Colletotrichum and Colletotrichum gloeosporioides. Based on a literature review very few articles have been published on (2S,3R,4R)-2-(3,4-dihydroxyphenyl)oxolane-3,4-diol.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118283D          

 27 28  0  0  0  0            999 V2000
   -4.4984   -0.2886   -1.1493 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1767   -0.2833   -0.7440 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2988   -1.0748   -1.4857 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9785   -1.0920   -1.1094 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4645   -0.3780   -0.0466 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9659   -0.4949    0.2361 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2474   -0.6652    1.5912 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5461   -0.2842    1.8097 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0807    0.3195    0.5282 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5855   -0.6804   -0.2748 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7410    0.7649   -0.0765 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8303    1.0484   -1.4058 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3450    0.3888    0.6629 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6914    0.4297    0.3089 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5321    1.2171    1.0565 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1984    0.2356   -0.6938 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6671   -1.6576   -2.3376 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3294   -1.7326   -1.7281 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4044   -1.3505   -0.2889 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5362    0.5568    2.5582 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1914   -1.0732    2.2213 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7528    1.1605    0.6897 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6010   -0.3874   -1.2044 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3511    1.6050    0.5080 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8038    0.2539   -1.9918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9553    0.9610    1.5080 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5019    1.2910    0.8580 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
  5 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 14  2  1  0  0  0  0
 11  6  1  0  0  0  0
  1 16  1  0  0  0  0
  3 17  1  0  0  0  0
  4 18  1  0  0  0  0
  6 19  1  6  0  0  0
  8 20  1  0  0  0  0
  8 21  1  0  0  0  0
  9 22  1  1  0  0  0
 10 23  1  0  0  0  0
 11 24  1  1  0  0  0
 12 25  1  0  0  0  0
 13 26  1  0  0  0  0
 15 27  1  0  0  0  0
M  END


  Mrv1652306242118283D          

 27 28  0  0  0  0            999 V2000
   -4.4984   -0.2886   -1.1493 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1767   -0.2833   -0.7440 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2988   -1.0748   -1.4857 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9785   -1.0920   -1.1094 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4645   -0.3780   -0.0466 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9659   -0.4949    0.2361 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2474   -0.6652    1.5912 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5461   -0.2842    1.8097 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0807    0.3195    0.5282 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5855   -0.6804   -0.2748 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7410    0.7649   -0.0765 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8303    1.0484   -1.4058 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3450    0.3888    0.6629 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6914    0.4297    0.3089 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5321    1.2171    1.0565 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1984    0.2356   -0.6938 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6671   -1.6576   -2.3376 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3294   -1.7326   -1.7281 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4044   -1.3505   -0.2889 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5362    0.5568    2.5582 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1914   -1.0732    2.2213 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7528    1.1605    0.6897 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6010   -0.3874   -1.2044 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3511    1.6050    0.5080 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8038    0.2539   -1.9918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9553    0.9610    1.5080 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5019    1.2910    0.8580 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
  5 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 14  2  1  0  0  0  0
 11  6  1  0  0  0  0
  1 16  1  0  0  0  0
  3 17  1  0  0  0  0
  4 18  1  0  0  0  0
  6 19  1  6  0  0  0
  8 20  1  0  0  0  0
  8 21  1  0  0  0  0
  9 22  1  1  0  0  0
 10 23  1  0  0  0  0
 11 24  1  1  0  0  0
 12 25  1  0  0  0  0
 13 26  1  0  0  0  0
 15 27  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0006550

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C([H])C([H])=C(C([H])=C1O[H])[C@]1([H])OC([H])([H])[C@@]([H])(O[H])[C@@]1([H])O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C10H12O5/c11-6-2-1-5(3-7(6)12)10-9(14)8(13)4-15-10/h1-3,8-14H,4H2/t8-,9-,10+/m1/s1

> <INCHI_KEY>
WAMIDUQDFSIAFF-BBBLOLIVSA-N

> <FORMULA>
C10H12O5

> <MOLECULAR_WEIGHT>
212.201

> <EXACT_MASS>
212.068473486

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
27

> <JCHEM_AVERAGE_POLARIZABILITY>
20.44764991613625

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,3R,4R)-2-(3,4-dihydroxyphenyl)oxolane-3,4-diol

> <ALOGPS_LOGP>
-0.79

> <JCHEM_LOGP>
-0.13053584833333334

> <ALOGPS_LOGS>
-0.85

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.458776313522161

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.208416057649986

> <JCHEM_PKA_STRONGEST_BASIC>
-3.5259794848674204

> <JCHEM_POLAR_SURFACE_AREA>
90.15

> <JCHEM_REFRACTIVITY>
51.21309999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.00e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3R,4R)-2-(3,4-dihydroxyphenyl)oxolane-3,4-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  O   UNK     0      -4.498  -0.289  -1.149  0.00  0.00           O+0
HETATM    2  C   UNK     0      -3.177  -0.283  -0.744  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.299  -1.075  -1.486  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.979  -1.092  -1.109  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.465  -0.378  -0.047  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.966  -0.495   0.236  0.00  0.00           C+0
HETATM    7  O   UNK     0       1.247  -0.665   1.591  0.00  0.00           O+0
HETATM    8  C   UNK     0       2.546  -0.284   1.810  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.081   0.320   0.528  0.00  0.00           C+0
HETATM   10  O   UNK     0       3.586  -0.680  -0.275  0.00  0.00           O+0
HETATM   11  C   UNK     0       1.741   0.765  -0.077  0.00  0.00           C+0
HETATM   12  O   UNK     0       1.830   1.048  -1.406  0.00  0.00           O+0
HETATM   13  C   UNK     0      -1.345   0.389   0.663  0.00  0.00           C+0
HETATM   14  C   UNK     0      -2.691   0.430   0.309  0.00  0.00           C+0
HETATM   15  O   UNK     0      -3.532   1.217   1.056  0.00  0.00           O+0
HETATM   16  H   UNK     0      -5.198   0.236  -0.694  0.00  0.00           H+0
HETATM   17  H   UNK     0      -2.667  -1.658  -2.338  0.00  0.00           H+0
HETATM   18  H   UNK     0      -0.329  -1.733  -1.728  0.00  0.00           H+0
HETATM   19  H   UNK     0       1.404  -1.351  -0.289  0.00  0.00           H+0
HETATM   20  H   UNK     0       2.536   0.557   2.558  0.00  0.00           H+0
HETATM   21  H   UNK     0       3.191  -1.073   2.221  0.00  0.00           H+0
HETATM   22  H   UNK     0       3.753   1.161   0.690  0.00  0.00           H+0
HETATM   23  H   UNK     0       3.601  -0.387  -1.204  0.00  0.00           H+0
HETATM   24  H   UNK     0       1.351   1.605   0.508  0.00  0.00           H+0
HETATM   25  H   UNK     0       1.804   0.254  -1.992  0.00  0.00           H+0
HETATM   26  H   UNK     0      -0.955   0.961   1.508  0.00  0.00           H+0
HETATM   27  H   UNK     0      -4.502   1.291   0.858  0.00  0.00           H+0
CONECT    1    2   16                                                       
CONECT    2    1    3   14                                                  
CONECT    3    2    4   17                                                  
CONECT    4    3    5   18                                                  
CONECT    5    4    6   13                                                  
CONECT    6    5    7   11   19                                             
CONECT    7    6    8                                                       
CONECT    8    7    9   20   21                                             
CONECT    9    8   10   11   22                                             
CONECT   10    9   23                                                       
CONECT   11    9   12    6   24                                             
CONECT   12   11   25                                                       
CONECT   13    5   14   26                                                  
CONECT   14   13   15    2                                                  
CONECT   15   14   27                                                       
CONECT   16    1                                                            
CONECT   17    3                                                            
CONECT   18    4                                                            
CONECT   19    6                                                            
CONECT   20    8                                                            
CONECT   21    8                                                            
CONECT   22    9                                                            
CONECT   23   10                                                            
CONECT   24   11                                                            
CONECT   25   12                                                            
CONECT   26   13                                                            
CONECT   27   15                                                            
MASTER        0    0    0    0    0    0    0    0   27    0   56    0
END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₁₀H₁₂O₅

Average Mass

212.2010 Da

Monoisotopic Mass

212.06847 Da

IUPAC Name

(2S,3R,4R)-2-(3,4-dihydroxyphenyl)oxolane-3,4-diol

Traditional Name

(2S,3R,4R)-2-(3,4-dihydroxyphenyl)oxolane-3,4-diol

CAS Registry Number

Not Available

SMILES

O[C@@H]1CO[C@H]([C@@H]1O)C1=CC(O)=C(O)C=C1

InChI Identifier

InChI=1S/C10H12O5/c11-6-2-1-5(3-7(6)12)10-9(14)8(13)4-15-10/h1-3,8-14H,4H2/t8-,9-,10+/m1/s1

InChI Key

WAMIDUQDFSIAFF-BBBLOLIVSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Colletotrichum	NPAtlas	16950623
Colletotrichum gloeosporioides	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phenolic glycosides. These are organic compounds containing a phenolic structure attached to a glycosyl moiety. Some examples of phenolic structures include lignans, and flavonoids. Among the sugar units found in natural glycosides are D-glucose, L-Fructose, and L rhamnose.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Phenolic glycosides

Alternative Parents

Substituents

Phenolic glycoside
Catechol
1-hydroxy-4-unsubstituted benzenoid
Phenol
1-hydroxy-2-unsubstituted benzenoid
Benzenoid
Monocyclic benzene moiety
Oxolane
Secondary alcohol
1,2-diol
Organoheterocyclic compound
Ether
Dialkyl ether
Oxacycle
Alcohol
Hydrocarbon derivative
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.79	ALOGPS
logP	-0.13	ChemAxon
logS	-0.85	ALOGPS
pKa (Strongest Acidic)	9.21	ChemAxon
pKa (Strongest Basic)	-3.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	90.15 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	51.21 m³·mol⁻¹	ChemAxon
Polarizability	20.45 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA003857

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

28288200

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

49818373

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for (2S,3R,4R)-2-(3,4-Dihydroxyphenyl)oxolane-3,4-diol (NP0006550)

MOL for NP0006550 ((2S,3R,4R)-2-(3,4-Dihydroxyphenyl)oxolane-3,4-diol)

3D MOL for NP0006550 ((2S,3R,4R)-2-(3,4-Dihydroxyphenyl)oxolane-3,4-diol)

3D SDF for NP0006550 ((2S,3R,4R)-2-(3,4-Dihydroxyphenyl)oxolane-3,4-diol)

3D-SDF for NP0006550 ((2S,3R,4R)-2-(3,4-Dihydroxyphenyl)oxolane-3,4-diol)

PDB for NP0006550 ((2S,3R,4R)-2-(3,4-Dihydroxyphenyl)oxolane-3,4-diol)

3D PDB for NP0006550 ((2S,3R,4R)-2-(3,4-Dihydroxyphenyl)oxolane-3,4-diol)

SMILES for NP0006550 ((2S,3R,4R)-2-(3,4-Dihydroxyphenyl)oxolane-3,4-diol)

INCHI for NP0006550 ((2S,3R,4R)-2-(3,4-Dihydroxyphenyl)oxolane-3,4-diol)

Structure for NP0006550 ((2S,3R,4R)-2-(3,4-Dihydroxyphenyl)oxolane-3,4-diol)

3D Structure for NP0006550 ((2S,3R,4R)-2-(3,4-Dihydroxyphenyl)oxolane-3,4-diol)