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Record Information
Version2.0
Created at2020-12-09 03:27:45 UTC
Updated at2021-07-15 16:54:50 UTC
NP-MRD IDNP0006451
Secondary Accession NumbersNone
Natural Product Identification
Common NameCyclo[N-(Lys-Phe)-Orn-Val]
Provided ByNPAtlasNPAtlas Logo
DescriptionCyclo[N-(Lys-Phe)-Orn-Val] is also known as cyclo(N-(lys-phe)-orn-val). Cyclo[N-(Lys-Phe)-Orn-Val] is found in Burkholderia cepacia. Cyclo[N-(Lys-Phe)-Orn-Val] was first documented in 2006 (PMID: 16826554). Based on a literature review very few articles have been published on Cyclo[N-(Lys-Phe)-Orn-Val].
Structure
Data?1624574716
Synonyms
ValueSource
Cyclo(N-(lys-phe)-orn-val)MeSH
Cyclo(N-(lysyl-phenylalanyl)ornithyl-valyl)MeSH
2,6-Diamino-N-{1-[(3S,6R)-6-(3-aminopropyl)-5-hydroxy-2-oxo-3-(propan-2-yl)-1,2,3,6-tetrahydropyrazin-1-yl]-1-oxo-3-phenylpropan-2-yl}hexanimidateGenerator
Chemical FormulaC25H40N6O4
Average Mass488.6330 Da
Monoisotopic Mass488.31110 Da
IUPAC Name(2R)-2,6-diamino-N-[(2S)-1-[(2R,5S)-2-(3-aminopropyl)-3,6-dioxo-5-(propan-2-yl)piperazin-1-yl]-1-oxo-3-phenylpropan-2-yl]hexanamide
Traditional Name(2R)-2,6-diamino-N-[(2S)-1-[(2R,5S)-2-(3-aminopropyl)-5-isopropyl-3,6-dioxopiperazin-1-yl]-1-oxo-3-phenylpropan-2-yl]hexanamide
CAS Registry NumberNot Available
SMILES
CC(C)[C@@H]1NC(=O)[C@@H](CCCN)N(C(=O)C(CC2=CC=CC=C2)NC(=O)C(N)CCCCN)C1=O
InChI Identifier
InChI=1S/C25H40N6O4/c1-16(2)21-25(35)31(20(12-8-14-27)23(33)30-21)24(34)19(15-17-9-4-3-5-10-17)29-22(32)18(28)11-6-7-13-26/h3-5,9-10,16,18-21H,6-8,11-15,26-28H2,1-2H3,(H,29,32)(H,30,33)/t18?,19?,20-,21+/m1/s1
InChI KeyNKNBNGMFQVMRAX-VFUGHAIPSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Burkholderia cepaciaNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.05ALOGPS
logP-0.39ChemAxon
logS-3.8ALOGPS
pKa (Strongest Acidic)11.29ChemAxon
pKa (Strongest Basic)10.26ChemAxon
Physiological Charge3ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count5ChemAxon
Polar Surface Area173.64 ŲChemAxon
Rotatable Bond Count13ChemAxon
Refractivity132.95 m³·mol⁻¹ChemAxon
Polarizability54.53 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA019658
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78442785
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139588564
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Perez-Picaso L, Rios MY, Hernandez AN, Martinez J: 1H and 13C assignments of cyclo[N-(Lys-Phe)-Orn-Val], a semicyclic imide tetrapeptide from Burkholderia cepacia. Magn Reson Chem. 2006 Oct;44(10):959-61. doi: 10.1002/mrc.1864. [PubMed:16826554 ]