Np mrd loader

Record Information
Version2.0
Created at2020-12-09 03:27:39 UTC
Updated at2021-07-15 16:54:50 UTC
NP-MRD IDNP0006449
Secondary Accession NumbersNone
Natural Product Identification
Common NameBerkelic acid
Provided ByNPAtlasNPAtlas Logo
Description Berkelic acid is found in Penicillium sp. Berkelic acid was first documented in 2006 (PMID: 16808526). Based on a literature review very few articles have been published on (2S,3R,4R,7'R)-4-(3-ethyl-4-methoxy-3-methyl-2,4-dioxobutyl)-11'-hydroxy-3-methyl-7'-pentyl-2',6'-dioxaspiro[oxolane-2,3'-tricyclo[7.3.1.0⁵,¹³]Tridecane]-1'(13'),9',11'-triene-12'-carboxylic acid.
Structure
Thumb
Synonyms
ValueSource
(2S,3R,4R,7'r)-4-(3-Ethyl-4-methoxy-3-methyl-2,4-dioxobutyl)-11'-hydroxy-3-methyl-7'-pentyl-2',6'-dioxaspiro[oxolane-2,3'-tricyclo[7.3.1.0,]tridecane]-1'(13'),9',11'-triene-12'-carboxylateGenerator
BerkelateGenerator
Chemical FormulaC29H40O9
Average Mass532.6300 Da
Monoisotopic Mass532.26723 Da
IUPAC Name(2S,3R,4R,5'S,7'R)-4-[(3S)-3-ethyl-4-methoxy-3-methyl-2,4-dioxobutyl]-11'-hydroxy-3-methyl-7'-pentyl-2',6'-dioxaspiro[oxolane-2,3'-tricyclo[7.3.1.0^{5,13}]tridecane]-1'(13'),9',11'-triene-12'-carboxylic acid
Traditional Name(2S,3R,4R,5'S,7'R)-4-[(3S)-3-ethyl-4-methoxy-3-methyl-2,4-dioxobutyl]-11'-hydroxy-3-methyl-7'-pentyl-2',6'-dioxaspiro[oxolane-2,3'-tricyclo[7.3.1.0^{5,13}]tridecane]-1'(13'),9',11'-triene-12'-carboxylic acid
CAS Registry NumberNot Available
SMILES
CCCCC[C@@H]1CC2=CC(O)=C(C(O)=O)C3=C2C(C[C@]2(OC[C@H](CC(=O)C(C)(CC)C(=O)OC)[C@H]2C)O3)O1
InChI Identifier
InChI=1S/C29H40O9/c1-6-8-9-10-19-11-17-12-20(30)24(26(32)33)25-23(17)21(37-19)14-29(38-25)16(3)18(15-36-29)13-22(31)28(4,7-2)27(34)35-5/h12,16,18-19,21,30H,6-11,13-15H2,1-5H3,(H,32,33)/t16-,18+,19-,21?,28?,29+/m1/s1
InChI KeyKUPCHRRTAPZASB-YKVDFVGGSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Penicillium sp.NPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP4.22ALOGPS
logP6.74ChemAxon
logS-5.4ALOGPS
pKa (Strongest Acidic)2.45ChemAxon
pKa (Strongest Basic)-3.9ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area128.59 ŲChemAxon
Rotatable Bond Count11ChemAxon
Refractivity138.57 m³·mol⁻¹ChemAxon
Polarizability59.11 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA003891
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78436691
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139584175
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Stierle AA, Stierle DB, Kelly K: Berkelic acid, a novel spiroketal with selective anticancer activity from an acid mine waste fungal extremophile. J Org Chem. 2006 Jul 7;71(14):5357-60. doi: 10.1021/jo060018d. [PubMed:16808526 ]