Np mrd loader

Record Information
Version2.0
Created at2020-12-09 03:26:49 UTC
Updated at2021-07-15 16:54:46 UTC
NP-MRD IDNP0006429
Secondary Accession NumbersNone
Natural Product Identification
Common NameOchrobactin B
Provided ByNPAtlasNPAtlas Logo
Description Ochrobactin B is found in Ochrobactrum sp. SP18. Based on a literature review very few articles have been published on (2S)-2-{[3-carboxy-3-({[(1S)-1-carboxy-5-[(2E)-N-hydroxydec-2-enamido]pentyl]-C-hydroxycarbonimidoyl}methyl)-1,3-dihydroxypropylidene]amino}-6-(N-hydroxyoctanamido)hexanoic acid.
Structure
Thumb
Synonyms
ValueSource
(2S)-2-{[3-carboxy-3-({[(1S)-1-carboxy-5-[(2E)-N-hydroxydec-2-enamido]pentyl]-C-hydroxycarbonimidoyl}methyl)-1,3-dihydroxypropylidene]amino}-6-(N-hydroxyoctanamido)hexanoateGenerator
Chemical FormulaC36H62N4O13
Average Mass758.9070 Da
Monoisotopic Mass758.43134 Da
IUPAC Name(2S)-2-[(3R)-3-carboxy-3-({[(1S)-1-carboxy-5-[(2E)-N-hydroxydec-2-enamido]pentyl]carbamoyl}methyl)-3-hydroxypropanamido]-6-(N-hydroxyoctanamido)hexanoic acid
Traditional Name(2S)-2-[(3R)-3-carboxy-3-({[(1S)-1-carboxy-5-[(2E)-N-hydroxydec-2-enamido]pentyl]carbamoyl}methyl)-3-hydroxypropanamido]-6-(N-hydroxyoctanamido)hexanoic acid
CAS Registry NumberNot Available
SMILES
CCCCCCC\C=C\C(=O)N(O)CCCC[C@H](NC(=O)CC(O)(CC(=O)N[C@@H](CCCCN(O)C(=O)CCCCCCC)C(O)=O)C(O)=O)C(O)=O
InChI Identifier
InChI=1S/C36H62N4O13/c1-3-5-7-9-10-12-14-22-32(44)40(53)24-18-16-20-28(34(47)48)38-30(42)26-36(51,35(49)50)25-29(41)37-27(33(45)46)19-15-17-23-39(52)31(43)21-13-11-8-6-4-2/h14,22,27-28,51-53H,3-13,15-21,23-26H2,1-2H3,(H,37,41)(H,38,42)(H,45,46)(H,47,48)(H,49,50)/b22-14+/t27-,28-,36?/m0/s1
InChI KeyKZEACDXUQDXNBD-DSWUTSPRSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Ochrobactrum sp. SP18NPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.04ALOGPS
logP3.71ChemAxon
logS-5.2ALOGPS
pKa (Strongest Acidic)2.98ChemAxon
pKa (Strongest Basic)-4.2ChemAxon
Physiological Charge-3ChemAxon
Hydrogen Acceptor Count13ChemAxon
Hydrogen Donor Count8ChemAxon
Polar Surface Area271.41 ŲChemAxon
Rotatable Bond Count32ChemAxon
Refractivity192.82 m³·mol⁻¹ChemAxon
Polarizability82.99 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA028325
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound134820310
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References