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Record Information
Version1.0
Created at2020-12-09 03:17:30 UTC
Updated at2021-07-15 16:54:17 UTC
NP-MRD IDNP0006259
Secondary Accession NumbersNone
Natural Product Identification
Common NameThioviridamide
Provided ByNPAtlasNPAtlas Logo
Description Thioviridamide is found in Streptomyces atroolivaceus and Streptomyces olivoviridis. It was first documented in 2006 (PMID: 16568712). Based on a literature review very few articles have been published on Thioviridamide.
Structure
Thumb
Synonyms
ValueSource
5-{[(2Z)-15-(butan-2-yl)-18-[(2-{[2-({2-[(2-{[2-({2-[(1,2-dihydroxy-2-methyl-4-oxopentylidene)amino]-3-methyl-1-sulphanylbutylidene}amino)-4-(methylsulphanyl)-1-sulphanylbutylidene]amino}-1-sulphanylpropylidene)amino]-1-sulphanylpropylidene}amino)-1-sulphanylpropylidene]amino}-1-hydroxypropylidene)amino]-5,8,11,14,17-pentahydroxy-12-methyl-9-(2-methylpropyl)-1-thia-4,7,10,13,16-pentaazacyclononadeca-2,4,7,10,13,16-hexaen-6-yl](hydroxy)methyl}-1,3-dimethyl-1H-imidazol-3-iumGenerator
Chemical FormulaC56H93N14O10S7
Average Mass1346.8700 Da
Monoisotopic Mass1345.52386 Da
IUPAC Name5-[(S)-[(2Z,6R,9R,12S,15S,18S)-15-[(2R)-butan-2-yl]-18-[(2R)-2-[(2R)-2-[(2S)-2-[(2R)-2-[(2S)-2-[(2S)-2-[(2R)-2-hydroxy-2-methyl-4-oxopentanamido]-3-methylbutanethioamido]-4-(methylsulfanyl)butanethioamido]propanethioamido]propanethioamido]propanethioamido]propanamido]-12-methyl-9-(2-methylpropyl)-5,8,11,14,17-pentaoxo-1-thia-4,7,10,13,16-pentaazacyclononadec-2-en-6-yl](hydroxy)methyl]-1,3-dimethyl-1H-imidazol-3-ium
Traditional Name4-[(S)-[(2Z,6R,9R,12S,15S,18S)-15-[(2R)-butan-2-yl]-18-[(2R)-2-[(2R)-2-[(2S)-2-[(2R)-2-[(2S)-2-[(2S)-2-[(2R)-2-hydroxy-2-methyl-4-oxopentanamido]-3-methylbutanethioamido]-4-(methylsulfanyl)butanethioamido]propanethioamido]propanethioamido]propanethioamido]propanamido]-12-methyl-9-(2-methylpropyl)-5,8,11,14,17-pentaoxo-1-thia-4,7,10,13,16-pentaazacyclononadec-2-en-6-yl](hydroxy)methyl]-1,3-dimethylimidazol-1-ium
CAS Registry NumberNot Available
SMILES
CCC(C)C1NC(=O)C(CS\C=C/NC(=O)C(NC(=O)C(CC(C)C)NC(=O)C(C)NC1=O)C(O)C1=C[N+](C)=CN1C)NC(=O)C(C)NC(=S)C(C)NC(=S)C(C)NC(=S)C(C)NC(=S)C(CCSC)NC(=S)C(NC(=O)C(C)(O)CC(C)=O)C(C)C
InChI Identifier
InChI=1S/C56H92N14O10S7/c1-17-29(6)41-49(78)58-31(8)44(73)63-37(22-27(2)3)46(75)67-42(43(72)39-24-69(14)26-70(39)15)48(77)57-19-21-87-25-38(47(76)66-41)64-45(74)32(9)59-50(81)33(10)60-51(82)34(11)61-52(83)35(12)62-53(84)36(18-20-86-16)65-54(85)40(28(4)5)68-55(79)56(13,80)23-30(7)71/h19,21,24,26-29,31-38,40-43,72,80H,17-18,20,22-23,25H2,1-16H3,(H11-,57,58,59,60,61,62,63,64,65,66,67,68,73,74,75,76,77,78,79,81,82,83,84,85)/p+1/b21-19-
InChI KeyTZZVQGHYMBASEV-VZCXRCSSSA-O
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces atroolivaceusLOTUS Database
Streptomyces olivoviridisNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.26ALOGPS
logP-3.1ChemAxon
logS-5.9ALOGPS
pKa (Strongest Acidic)10.16ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count10ChemAxon
Hydrogen Donor Count14ChemAxon
Polar Surface Area330.19 ŲChemAxon
Rotatable Bond Count26ChemAxon
Refractivity361.96 m³·mol⁻¹ChemAxon
Polarizability143.92 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA011569
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID9896988
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound11722272
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Hayakawa Y, Sasaki K, Adachi H, Furihata K, Nagai K, Shin-ya K: Thioviridamide, a novel apoptosis inducer in transformed cells from Streptomyces olivoviridis. J Antibiot (Tokyo). 2006 Jan;59(1):1-5. doi: 10.1038/ja.2006.1. [PubMed:16568712 ]