Record Information |
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Version | 1.0 |
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Created at | 2020-12-09 03:12:48 UTC |
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Updated at | 2021-07-15 16:54:01 UTC |
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NP-MRD ID | NP0006165 |
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Secondary Accession Numbers | None |
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Natural Product Identification |
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Common Name | GE81112 |
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Provided By | NPAtlas |
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Description | GE81112 is found in Streptomyces sp. It was first documented in 2006 (PMID: 16380421). Based on a literature review very few articles have been published on 3-(5-chloro-1H-imidazol-2-yl)-2-({2-[(1,4-dihydroxy-2-{[hydroxy(3-hydroxypiperidin-2-yl)methylidene]amino}-5-(C-hydroxycarbonimidoyloxy)pentylidene)amino]-1-hydroxy-3-(2-imino-2,3-dihydro-1H-imidazol-4-yl)propylidene}amino)-3-hydroxypropanoic acid (PMID: 33416325) (PMID: 31610076) (PMID: 28489306) (PMID: 27986852) (PMID: 27231947) (PMID: 27071098). |
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Structure | [H]OC(=O)[C@]([H])(N([H])C(=O)[C@]([H])(N([H])C(=O)[C@]([H])(N([H])C(=O)[C@]1([H])N([H])C([H])([H])C([H])([H])C([H])([H])[C@]1([H])O[H])C([H])([H])[C@]([H])(O[H])C([H])([H])OC(=O)N([H])[H])C([H])([H])C1=C([H])N=C(N([H])[H])N1[H])[C@@]([H])(O[H])C1=NC([H])=C(Cl)N1[H] InChI=1S/C24H35ClN10O10/c25-14-7-29-18(34-14)17(38)16(22(42)43)35-20(40)11(4-9-6-30-23(26)31-9)32-19(39)12(5-10(36)8-45-24(27)44)33-21(41)15-13(37)2-1-3-28-15/h6-7,10-13,15-17,28,36-38H,1-5,8H2,(H2,27,44)(H,29,34)(H,32,39)(H,33,41)(H,35,40)(H,42,43)(H3,26,30,31)/t10-,11+,12+,13-,15+,16+,17+/m0/s1 |
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Synonyms | Value | Source |
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3-(5-Chloro-1H-imidazol-2-yl)-2-({2-[(1,4-dihydroxy-2-{[hydroxy(3-hydroxypiperidin-2-yl)methylidene]amino}-5-(C-hydroxycarbonimidoyloxy)pentylidene)amino]-1-hydroxy-3-(2-imino-2,3-dihydro-1H-imidazol-4-yl)propylidene}amino)-3-hydroxypropanoate | Generator |
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Chemical Formula | C24H35ClN10O10 |
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Average Mass | 659.0500 Da |
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Monoisotopic Mass | 658.22262 Da |
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IUPAC Name | (2R,3R)-2-[(2R)-3-(2-amino-1H-imidazol-5-yl)-2-[(2R,4S)-5-(carbamoyloxy)-4-hydroxy-2-{[(2R,3S)-3-hydroxypiperidin-2-yl]formamido}pentanamido]propanamido]-3-(5-chloro-1H-imidazol-2-yl)-3-hydroxypropanoic acid |
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Traditional Name | (2R,3R)-2-[(2R)-3-(2-amino-3H-imidazol-4-yl)-2-[(2R,4S)-5-(carbamoyloxy)-4-hydroxy-2-{[(2R,3S)-3-hydroxypiperidin-2-yl]formamido}pentanamido]propanamido]-3-(4-chloro-3H-imidazol-2-yl)-3-hydroxypropanoic acid |
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CAS Registry Number | Not Available |
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SMILES | NC(=O)OCC(O)CC(NC(=O)C1NCCCC1O)C(=O)NC(CC1=CN=C(N)N1)C(=O)NC(C(O)C1=NC=C(Cl)N1)C(O)=O |
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InChI Identifier | InChI=1S/C24H35ClN10O10/c25-14-7-29-18(34-14)17(38)16(22(42)43)35-20(40)11(4-9-6-30-23(26)31-9)32-19(39)12(5-10(36)8-45-24(27)44)33-21(41)15-13(37)2-1-3-28-15/h6-7,10-13,15-17,28,36-38H,1-5,8H2,(H2,27,44)(H,29,34)(H,32,39)(H,33,41)(H,35,40)(H,42,43)(H3,26,30,31) |
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InChI Key | XUPLSXHPJUYVNP-UHFFFAOYSA-N |
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Experimental Spectra |
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| Not Available | Predicted Spectra |
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| Spectrum Type | Description | Depositor ID | Depositor Organization | Depositor | Deposition Date | View |
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1D NMR | 13C NMR Spectrum (1D, 25 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 100 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 252 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 50 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 200 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 75 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 300 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 101 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 400 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 126 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 500 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 151 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 600 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 176 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 700 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 201 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 800 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 226 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 900 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum |
| Chemical Shift Submissions |
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| Not Available | Species |
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Species of Origin | |
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Chemical Taxonomy |
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Classification | Not classified |
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Physical Properties |
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State | Not Available |
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Experimental Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Predicted Properties | |
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General References | - Brandi L, Fabbretti A, La Teana A, Abbondi M, Losi D, Donadio S, Gualerzi CO: Specific, efficient, and selective inhibition of prokaryotic translation initiation by a novel peptide antibiotic. Proc Natl Acad Sci U S A. 2006 Jan 3;103(1):39-44. doi: 10.1073/pnas.0507740102. Epub 2005 Dec 27. [PubMed:16380421 ]
- Zwick CR 3rd, Sosa MB, Renata H: Modular Chemoenzymatic Synthesis of GE81112 B1 and Related Analogues Enables Elucidation of Its Key Pharmacophores. J Am Chem Soc. 2021 Jan 27;143(3):1673-1679. doi: 10.1021/jacs.0c13424. Epub 2021 Jan 8. [PubMed:33416325 ]
- Zwick CR 3rd, Sosa MB, Renata H: Characterization of a Citrulline 4-Hydroxylase from Nonribosomal Peptide GE81112 Biosynthesis and Engineering of Its Substrate Specificity for the Chemoenzymatic Synthesis of Enduracididine. Angew Chem Int Ed Engl. 2019 Dec 19;58(52):18854-18858. doi: 10.1002/anie.201910659. Epub 2019 Nov 11. [PubMed:31610076 ]
- Mattay J, Huttel W: Pipecolic Acid Hydroxylases: A Monophyletic Clade among cis-Selective Bacterial Proline Hydroxylases that Discriminates l-Proline. Chembiochem. 2017 Aug 4;18(15):1523-1528. doi: 10.1002/cbic.201700187. Epub 2017 Jun 30. [PubMed:28489306 ]
- Lopez-Alonso JP, Fabbretti A, Kaminishi T, Iturrioz I, Brandi L, Gil-Carton D, Gualerzi CO, Fucini P, Connell SR: Structure of a 30S pre-initiation complex stalled by GE81112 reveals structural parallels in bacterial and eukaryotic protein synthesis initiation pathways. Nucleic Acids Res. 2017 Feb 28;45(4):2179-2187. doi: 10.1093/nar/gkw1251. [PubMed:27986852 ]
- Maio A, Brandi L, Donadio S, Gualerzi CO: The Oligopeptide Permease Opp Mediates Illicit Transport of the Bacterial P-site Decoding Inhibitor GE81112. Antibiotics (Basel). 2016 May 24;5(2). pii: antibiotics5020017. doi: 10.3390/antibiotics5020017. [PubMed:27231947 ]
- Fabbretti A, Schedlbauer A, Brandi L, Kaminishi T, Giuliodori AM, Garofalo R, Ochoa-Lizarralde B, Takemoto C, Yokoyama S, Connell SR, Gualerzi CO, Fucini P: Inhibition of translation initiation complex formation by GE81112 unravels a 16S rRNA structural switch involved in P-site decoding. Proc Natl Acad Sci U S A. 2016 Apr 19;113(16):E2286-95. doi: 10.1073/pnas.1521156113. Epub 2016 Apr 6. [PubMed:27071098 ]
- Binz TM, Maffioli SI, Sosio M, Donadio S, Muller R: Insights into an unusual nonribosomal peptide synthetase biosynthesis: identification and characterization of the GE81112 biosynthetic gene cluster. J Biol Chem. 2010 Oct 22;285(43):32710-32719. doi: 10.1074/jbc.M110.146803. Epub 2010 Aug 14. [PubMed:20710026 ]
- Brandi L, Lazzarini A, Cavaletti L, Abbondi M, Corti E, Ciciliato I, Gastaldo L, Marazzi A, Feroggio M, Fabbretti A, Maio A, Colombo L, Donadio S, Marinelli F, Losi D, Gualerzi CO, Selva E: Novel tetrapeptide inhibitors of bacterial protein synthesis produced by a Streptomyces sp. Biochemistry. 2006 Mar 21;45(11):3692-702. doi: 10.1021/bi052540k. [PubMed:16533052 ]
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