Np mrd loader

Record Information
Version1.0
Created at2020-12-09 03:12:48 UTC
Updated at2021-07-15 16:54:01 UTC
NP-MRD IDNP0006165
Secondary Accession NumbersNone
Natural Product Identification
Common NameGE81112
Provided ByNPAtlasNPAtlas Logo
Description GE81112 is found in Streptomyces sp. It was first documented in 2006 (PMID: 16380421). Based on a literature review very few articles have been published on 3-(5-chloro-1H-imidazol-2-yl)-2-({2-[(1,4-dihydroxy-2-{[hydroxy(3-hydroxypiperidin-2-yl)methylidene]amino}-5-(C-hydroxycarbonimidoyloxy)pentylidene)amino]-1-hydroxy-3-(2-imino-2,3-dihydro-1H-imidazol-4-yl)propylidene}amino)-3-hydroxypropanoic acid (PMID: 33416325) (PMID: 31610076) (PMID: 28489306) (PMID: 27986852) (PMID: 27231947) (PMID: 27071098).
Structure
Thumb
Synonyms
ValueSource
3-(5-Chloro-1H-imidazol-2-yl)-2-({2-[(1,4-dihydroxy-2-{[hydroxy(3-hydroxypiperidin-2-yl)methylidene]amino}-5-(C-hydroxycarbonimidoyloxy)pentylidene)amino]-1-hydroxy-3-(2-imino-2,3-dihydro-1H-imidazol-4-yl)propylidene}amino)-3-hydroxypropanoateGenerator
Chemical FormulaC24H35ClN10O10
Average Mass659.0500 Da
Monoisotopic Mass658.22262 Da
IUPAC Name(2R,3R)-2-[(2R)-3-(2-amino-1H-imidazol-5-yl)-2-[(2R,4S)-5-(carbamoyloxy)-4-hydroxy-2-{[(2R,3S)-3-hydroxypiperidin-2-yl]formamido}pentanamido]propanamido]-3-(5-chloro-1H-imidazol-2-yl)-3-hydroxypropanoic acid
Traditional Name(2R,3R)-2-[(2R)-3-(2-amino-3H-imidazol-4-yl)-2-[(2R,4S)-5-(carbamoyloxy)-4-hydroxy-2-{[(2R,3S)-3-hydroxypiperidin-2-yl]formamido}pentanamido]propanamido]-3-(4-chloro-3H-imidazol-2-yl)-3-hydroxypropanoic acid
CAS Registry NumberNot Available
SMILES
NC(=O)OCC(O)CC(NC(=O)C1NCCCC1O)C(=O)NC(CC1=CN=C(N)N1)C(=O)NC(C(O)C1=NC=C(Cl)N1)C(O)=O
InChI Identifier
InChI=1S/C24H35ClN10O10/c25-14-7-29-18(34-14)17(38)16(22(42)43)35-20(40)11(4-9-6-30-23(26)31-9)32-19(39)12(5-10(36)8-45-24(27)44)33-21(41)15-13(37)2-1-3-28-15/h6-7,10-13,15-17,28,36-38H,1-5,8H2,(H2,27,44)(H,29,34)(H,32,39)(H,33,41)(H,35,40)(H,42,43)(H3,26,30,31)
InChI KeyXUPLSXHPJUYVNP-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces sp.NPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-1.7ALOGPS
logP-7.3ChemAxon
logS-2.6ALOGPS
pKa (Strongest Acidic)2.96ChemAxon
pKa (Strongest Basic)8.9ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count13ChemAxon
Hydrogen Donor Count12ChemAxon
Polar Surface Area333.02 ŲChemAxon
Rotatable Bond Count16ChemAxon
Refractivity150.84 m³·mol⁻¹ChemAxon
Polarizability63.71 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA003664
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID9753104
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound11578336
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Brandi L, Fabbretti A, La Teana A, Abbondi M, Losi D, Donadio S, Gualerzi CO: Specific, efficient, and selective inhibition of prokaryotic translation initiation by a novel peptide antibiotic. Proc Natl Acad Sci U S A. 2006 Jan 3;103(1):39-44. doi: 10.1073/pnas.0507740102. Epub 2005 Dec 27. [PubMed:16380421 ]
  2. Zwick CR 3rd, Sosa MB, Renata H: Modular Chemoenzymatic Synthesis of GE81112 B1 and Related Analogues Enables Elucidation of Its Key Pharmacophores. J Am Chem Soc. 2021 Jan 27;143(3):1673-1679. doi: 10.1021/jacs.0c13424. Epub 2021 Jan 8. [PubMed:33416325 ]
  3. Zwick CR 3rd, Sosa MB, Renata H: Characterization of a Citrulline 4-Hydroxylase from Nonribosomal Peptide GE81112 Biosynthesis and Engineering of Its Substrate Specificity for the Chemoenzymatic Synthesis of Enduracididine. Angew Chem Int Ed Engl. 2019 Dec 19;58(52):18854-18858. doi: 10.1002/anie.201910659. Epub 2019 Nov 11. [PubMed:31610076 ]
  4. Mattay J, Huttel W: Pipecolic Acid Hydroxylases: A Monophyletic Clade among cis-Selective Bacterial Proline Hydroxylases that Discriminates l-Proline. Chembiochem. 2017 Aug 4;18(15):1523-1528. doi: 10.1002/cbic.201700187. Epub 2017 Jun 30. [PubMed:28489306 ]
  5. Lopez-Alonso JP, Fabbretti A, Kaminishi T, Iturrioz I, Brandi L, Gil-Carton D, Gualerzi CO, Fucini P, Connell SR: Structure of a 30S pre-initiation complex stalled by GE81112 reveals structural parallels in bacterial and eukaryotic protein synthesis initiation pathways. Nucleic Acids Res. 2017 Feb 28;45(4):2179-2187. doi: 10.1093/nar/gkw1251. [PubMed:27986852 ]
  6. Maio A, Brandi L, Donadio S, Gualerzi CO: The Oligopeptide Permease Opp Mediates Illicit Transport of the Bacterial P-site Decoding Inhibitor GE81112. Antibiotics (Basel). 2016 May 24;5(2). pii: antibiotics5020017. doi: 10.3390/antibiotics5020017. [PubMed:27231947 ]
  7. Fabbretti A, Schedlbauer A, Brandi L, Kaminishi T, Giuliodori AM, Garofalo R, Ochoa-Lizarralde B, Takemoto C, Yokoyama S, Connell SR, Gualerzi CO, Fucini P: Inhibition of translation initiation complex formation by GE81112 unravels a 16S rRNA structural switch involved in P-site decoding. Proc Natl Acad Sci U S A. 2016 Apr 19;113(16):E2286-95. doi: 10.1073/pnas.1521156113. Epub 2016 Apr 6. [PubMed:27071098 ]
  8. Binz TM, Maffioli SI, Sosio M, Donadio S, Muller R: Insights into an unusual nonribosomal peptide synthetase biosynthesis: identification and characterization of the GE81112 biosynthetic gene cluster. J Biol Chem. 2010 Oct 22;285(43):32710-32719. doi: 10.1074/jbc.M110.146803. Epub 2010 Aug 14. [PubMed:20710026 ]
  9. Brandi L, Lazzarini A, Cavaletti L, Abbondi M, Corti E, Ciciliato I, Gastaldo L, Marazzi A, Feroggio M, Fabbretti A, Maio A, Colombo L, Donadio S, Marinelli F, Losi D, Gualerzi CO, Selva E: Novel tetrapeptide inhibitors of bacterial protein synthesis produced by a Streptomyces sp. Biochemistry. 2006 Mar 21;45(11):3692-702. doi: 10.1021/bi052540k. [PubMed:16533052 ]