NP-MRD: Showing NP-Card for Vialinin A (NP0006152)

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Record Information

Version

2.0

Created at

2020-12-09 03:12:17 UTC

Updated at

2021-07-15 16:53:59 UTC

NP-MRD ID

NP0006152

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Vialinin A

Provided By

NPAtlas

Description

Vialinin A is found in Thelephora aurantiotincta and Thelephora vialis. Vialinin A was first documented in 2005 (PMID: 16377890). Based on a literature review very few articles have been published on 4',5,6-trihydroxy-4-(4-hydroxyphenyl)-2-[(2-phenylacetyl)oxy]-[1,1'-biphenyl]-3-yl 2-phenylacetate.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118253D          

 68 72  0  0  0  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652306242118253D          

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M  END
> <DATABASE_ID>
NP0006152

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C([H])C([H])=C(C([H])=C1[H])C1=C(O[H])C(O[H])=C(C2=C([H])C([H])=C(O[H])C([H])=C2[H])C(OC(=O)C([H])([H])C2=C([H])C([H])=C([H])C([H])=C2[H])=C1OC(=O)C([H])([H])C1=C([H])C([H])=C([H])C([H])=C1[H]

> <INCHI_IDENTIFIER>
InChI=1S/C34H26O8/c35-25-15-11-23(12-16-25)29-31(39)32(40)30(24-13-17-26(36)18-14-24)34(42-28(38)20-22-9-5-2-6-10-22)33(29)41-27(37)19-21-7-3-1-4-8-21/h1-18,35-36,39-40H,19-20H2

> <INCHI_KEY>
NOJUKCRPSUMHQQ-UHFFFAOYSA-N

> <FORMULA>
C34H26O8

> <MOLECULAR_WEIGHT>
562.574

> <EXACT_MASS>
562.162767797

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
68

> <JCHEM_AVERAGE_POLARIZABILITY>
58.24442947663747

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
4',5,6-trihydroxy-4-(4-hydroxyphenyl)-3-[(2-phenylacetyl)oxy]-[1,1'-biphenyl]-2-yl 2-phenylacetate

> <ALOGPS_LOGP>
5.72

> <JCHEM_LOGP>
6.936636841333332

> <ALOGPS_LOGS>
-5.00

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.412569317280491

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.66126818924311

> <JCHEM_PKA_STRONGEST_BASIC>
-5.51157535140008

> <JCHEM_POLAR_SURFACE_AREA>
133.52

> <JCHEM_REFRACTIVITY>
155.96259999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
5.69e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
4',5,6-trihydroxy-4-(4-hydroxyphenyl)-3-[(2-phenylacetyl)oxy]-[1,1'-biphenyl]-2-yl phenylacetate

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

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 42 68  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  O   UNK     0      -1.213   1.027   1.420  0.00  0.00           O+0
HETATM    2  C   UNK     0      -1.133   1.239   0.212  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.394   2.576  -0.438  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.807   2.922  -0.504  0.00  0.00           C+0
HETATM    5  C   UNK     0      -3.463   3.519   0.528  0.00  0.00           C+0
HETATM    6  C   UNK     0      -4.819   3.843   0.429  0.00  0.00           C+0
HETATM    7  C   UNK     0      -5.503   3.561  -0.710  0.00  0.00           C+0
HETATM    8  C   UNK     0      -4.866   2.958  -1.766  0.00  0.00           C+0
HETATM    9  C   UNK     0      -3.523   2.642  -1.662  0.00  0.00           C+0
HETATM   10  O   UNK     0      -0.795   0.231  -0.626  0.00  0.00           O+0
HETATM   11  C   UNK     0      -0.490  -1.079  -0.367  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.779  -1.518  -0.636  0.00  0.00           C+0
HETATM   13  O   UNK     0       1.728  -0.617  -1.158  0.00  0.00           O+0
HETATM   14  C   UNK     0       2.285   0.388  -0.421  0.00  0.00           C+0
HETATM   15  O   UNK     0       1.938   0.534   0.774  0.00  0.00           O+0
HETATM   16  C   UNK     0       3.302   1.346  -0.951  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.655   2.374   0.061  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.170   3.669  -0.050  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.453   4.658   0.870  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.257   4.353   1.955  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.756   3.078   2.098  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.449   2.101   1.146  0.00  0.00           C+0
HETATM   23  C   UNK     0       1.220  -2.831  -0.426  0.00  0.00           C+0
HETATM   24  C   UNK     0       2.608  -3.159  -0.779  0.00  0.00           C+0
HETATM   25  C   UNK     0       2.850  -3.349  -2.131  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.097  -3.639  -2.626  0.00  0.00           C+0
HETATM   27  C   UNK     0       5.144  -3.746  -1.748  0.00  0.00           C+0
HETATM   28  O   UNK     0       6.396  -4.036  -2.257  0.00  0.00           O+0
HETATM   29  C   UNK     0       4.896  -3.556  -0.388  0.00  0.00           C+0
HETATM   30  C   UNK     0       3.640  -3.265   0.095  0.00  0.00           C+0
HETATM   31  C   UNK     0       0.328  -3.727   0.080  0.00  0.00           C+0
HETATM   32  O   UNK     0       0.745  -5.050   0.297  0.00  0.00           O+0
HETATM   33  C   UNK     0      -0.975  -3.322   0.371  0.00  0.00           C+0
HETATM   34  O   UNK     0      -1.887  -4.233   0.887  0.00  0.00           O+0
HETATM   35  C   UNK     0      -1.376  -2.006   0.147  0.00  0.00           C+0
HETATM   36  C   UNK     0      -2.721  -1.654   0.537  0.00  0.00           C+0
HETATM   37  C   UNK     0      -3.770  -1.371  -0.307  0.00  0.00           C+0
HETATM   38  C   UNK     0      -5.018  -1.035   0.215  0.00  0.00           C+0
HETATM   39  C   UNK     0      -5.261  -0.972   1.563  0.00  0.00           C+0
HETATM   40  O   UNK     0      -6.520  -0.632   2.052  0.00  0.00           O+0
HETATM   41  C   UNK     0      -4.221  -1.254   2.415  0.00  0.00           C+0
HETATM   42  C   UNK     0      -2.984  -1.586   1.907  0.00  0.00           C+0
HETATM   43  H   UNK     0      -0.837   3.303   0.214  0.00  0.00           H+0
HETATM   44  H   UNK     0      -0.881   2.647  -1.424  0.00  0.00           H+0
HETATM   45  H   UNK     0      -2.931   3.758   1.462  0.00  0.00           H+0
HETATM   46  H   UNK     0      -5.261   4.314   1.298  0.00  0.00           H+0
HETATM   47  H   UNK     0      -6.541   3.795  -0.817  0.00  0.00           H+0
HETATM   48  H   UNK     0      -5.385   2.722  -2.689  0.00  0.00           H+0
HETATM   49  H   UNK     0      -3.061   2.169  -2.515  0.00  0.00           H+0
HETATM   50  H   UNK     0       2.982   1.790  -1.906  0.00  0.00           H+0
HETATM   51  H   UNK     0       4.191   0.721  -1.216  0.00  0.00           H+0
HETATM   52  H   UNK     0       2.543   3.887  -0.911  0.00  0.00           H+0
HETATM   53  H   UNK     0       3.085   5.670   0.798  0.00  0.00           H+0
HETATM   54  H   UNK     0       4.482   5.140   2.688  0.00  0.00           H+0
HETATM   55  H   UNK     0       5.376   2.869   2.953  0.00  0.00           H+0
HETATM   56  H   UNK     0       4.843   1.094   1.264  0.00  0.00           H+0
HETATM   57  H   UNK     0       2.027  -3.265  -2.844  0.00  0.00           H+0
HETATM   58  H   UNK     0       4.285  -3.784  -3.680  0.00  0.00           H+0
HETATM   59  H   UNK     0       6.973  -3.230  -2.521  0.00  0.00           H+0
HETATM   60  H   UNK     0       5.714  -3.633   0.308  0.00  0.00           H+0
HETATM   61  H   UNK     0       3.427  -3.112   1.143  0.00  0.00           H+0
HETATM   62  H   UNK     0       0.103  -5.741   0.676  0.00  0.00           H+0
HETATM   63  H   UNK     0      -2.835  -3.954   1.097  0.00  0.00           H+0
HETATM   64  H   UNK     0      -3.571  -1.422  -1.360  0.00  0.00           H+0
HETATM   65  H   UNK     0      -5.842  -0.810  -0.443  0.00  0.00           H+0
HETATM   66  H   UNK     0      -7.233  -1.307   2.244  0.00  0.00           H+0
HETATM   67  H   UNK     0      -4.413  -1.203   3.476  0.00  0.00           H+0
HETATM   68  H   UNK     0      -2.197  -1.799   2.593  0.00  0.00           H+0
CONECT    1    2                                                            
CONECT    2    1    3   10                                                  
CONECT    3    2    4   43   44                                             
CONECT    4    3    5    9                                                  
CONECT    5    4    6   45                                                  
CONECT    6    5    7   46                                                  
CONECT    7    6    8   47                                                  
CONECT    8    7    9   48                                                  
CONECT    9    8    4   49                                                  
CONECT   10    2   11                                                       
CONECT   11   10   12   35                                                  
CONECT   12   11   13   23                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17   50   51                                             
CONECT   17   16   18   22                                                  
CONECT   18   17   19   52                                                  
CONECT   19   18   20   53                                                  
CONECT   20   19   21   54                                                  
CONECT   21   20   22   55                                                  
CONECT   22   21   17   56                                                  
CONECT   23   12   24   31                                                  
CONECT   24   23   25   30                                                  
CONECT   25   24   26   57                                                  
CONECT   26   25   27   58                                                  
CONECT   27   26   28   29                                                  
CONECT   28   27   59                                                       
CONECT   29   27   30   60                                                  
CONECT   30   29   24   61                                                  
CONECT   31   23   32   33                                                  
CONECT   32   31   62                                                       
CONECT   33   31   34   35                                                  
CONECT   34   33   63                                                       
CONECT   35   33   36   11                                                  
CONECT   36   35   37   42                                                  
CONECT   37   36   38   64                                                  
CONECT   38   37   39   65                                                  
CONECT   39   38   40   41                                                  
CONECT   40   39   66                                                       
CONECT   41   39   42   67                                                  
CONECT   42   41   36   68                                                  
CONECT   43    3                                                            
CONECT   44    3                                                            
CONECT   45    5                                                            
CONECT   46    6                                                            
CONECT   47    7                                                            
CONECT   48    8                                                            
CONECT   49    9                                                            
CONECT   50   16                                                            
CONECT   51   16                                                            
CONECT   52   18                                                            
CONECT   53   19                                                            
CONECT   54   20                                                            
CONECT   55   21                                                            
CONECT   56   22                                                            
CONECT   57   25                                                            
CONECT   58   26                                                            
CONECT   59   28                                                            
CONECT   60   29                                                            
CONECT   61   30                                                            
CONECT   62   32                                                            
CONECT   63   34                                                            
CONECT   64   37                                                            
CONECT   65   38                                                            
CONECT   66   40                                                            
CONECT   67   41                                                            
CONECT   68   42                                                            
MASTER        0    0    0    0    0    0    0    0   68    0  144    0
END

RDKit          3D

68 72  0  0  0  0  0  0  0  0999 V2000
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M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
4',5,6-Trihydroxy-4-(4-hydroxyphenyl)-2-[(2-phenylacetyl)oxy]-[1,1'-biphenyl]-3-yl 2-phenylacetic acid	Generator
Ganbajunin C	MeSH
5',6'-Bis(phenylacetoxy)-1,1'-4',1''-terphenyl-2',3',4,4''-tetraol	MeSH

Chemical Formula

C₃₄H₂₆O₈

Average Mass

562.5740 Da

Monoisotopic Mass

562.16277 Da

IUPAC Name

4',5,6-trihydroxy-4-(4-hydroxyphenyl)-3-[(2-phenylacetyl)oxy]-[1,1'-biphenyl]-2-yl 2-phenylacetate

Traditional Name

4',5,6-trihydroxy-4-(4-hydroxyphenyl)-3-[(2-phenylacetyl)oxy]-[1,1'-biphenyl]-2-yl phenylacetate

CAS Registry Number

Not Available

SMILES

OC1=CC=C(C=C1)C1=C(O)C(O)=C(C2=CC=C(O)C=C2)C(OC(=O)CC2=CC=CC=C2)=C1OC(=O)CC1=CC=CC=C1

InChI Identifier

InChI=1S/C34H26O8/c35-25-15-11-23(12-16-25)29-31(39)32(40)30(24-13-17-26(36)18-14-24)34(42-28(38)20-22-9-5-2-6-10-22)33(29)41-27(37)19-21-7-3-1-4-8-21/h1-18,35-36,39-40H,19-20H2

InChI Key

NOJUKCRPSUMHQQ-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Thelephora aurantiotincta	LOTUS Database	35616633
Thelephora vialis	NPAtlas	16377890

Species Where Detected

Species Name	Source	Reference
Thelephora terrestris	KNApSAcK Database	22123792

Chemical Taxonomy

Description

This compound belongs to the class of organic compounds known as p-terphenyls. These are terphenyls with a structure containing the 1,4-diphenylbenzene skeleton.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Benzene and substituted derivatives

Sub Class

Terphenyls

Direct Parent

P-terphenyls

Alternative Parents

Substituents

Para-terphenyl
Biphenyl
Phenol ester
Phenoxy compound
Catechol
1-hydroxy-2-unsubstituted benzenoid
Phenol
Dicarboxylic acid or derivatives
Carboxylic acid ester
Carboxylic acid derivative
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organic oxygen compound
Organooxygen compound
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.72	ALOGPS
logP	6.94	ChemAxon
logS	-5	ALOGPS
pKa (Strongest Acidic)	8.66	ChemAxon
pKa (Strongest Basic)	-5.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	133.52 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	155.96 m³·mol⁻¹	ChemAxon
Polarizability	58.24 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

NPAtlas ID

NPA017880

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00035405

Chemspider ID

9737907

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11563133

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Xie C, Koshino H, Esumi Y, Takahashi S, Yoshikawa K, Abe N: Vialinin A, a novel 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical scavenger from an edible mushroom in China. Biosci Biotechnol Biochem. 2005 Dec;69(12):2326-32. doi: 10.1271/bbb.69.2326. [PubMed:16377890 ]

Showing NP-Card for Vialinin A (NP0006152)

MOL for NP0006152 (Vialinin A)

3D MOL for NP0006152 (Vialinin A)

3D SDF for NP0006152 (Vialinin A)

3D-SDF for NP0006152 (Vialinin A)

PDB for NP0006152 (Vialinin A)

3D PDB for NP0006152 (Vialinin A)

SMILES for NP0006152 (Vialinin A)

INCHI for NP0006152 (Vialinin A)

Structure for NP0006152 (Vialinin A)

3D Structure for NP0006152 (Vialinin A)