NP-MRD: Showing NP-Card for Gliocladine D (NP0006096)

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Record Information

Version

2.0

Created at

2020-12-09 03:09:52 UTC

Updated at

2021-07-15 16:53:49 UTC

NP-MRD ID

NP0006096

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Gliocladine D

Provided By

NPAtlas

Description

Gliocladine D is found in Clonostachys rosea and Gliocladium. Based on a literature review very few articles have been published on (1S,2S,3S,11R,14S)-2-hydroxy-3-(1H-indol-3-yl)-14,19-dimethyl-15,16,17-trithia-10,12,19-triazapentacyclo[12.3.2.0¹,¹².0³,¹¹.0⁴,⁹]Nonadeca-4,6,8-triene-13,18-dione.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118253D          

 53 59  0  0  0  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652306242118253D          

 53 59  0  0  0  0            999 V2000
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   -1.5885    2.1792   -2.2891 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0498    4.6254   -2.4697 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8994    5.7962   -1.6737 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4665    4.6628   -0.2044 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1290    2.3924    0.4683 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9181   -1.5461   -2.1532 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6900   -3.2221   -1.5259 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5528   -3.5023    0.4606 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4386   -2.4568    2.4804 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4658   -0.2966    3.2296 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6296    0.7904    1.9741 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1229    1.7867    1.3286 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3148    0.0927    2.5918 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  5  3  1  0  0  0  0
  5  6  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  1  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  1  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 22 32  1  0  0  0  0
 32 33  1  0  0  0  0
  9  2  1  0  0  0  0
 22 14  1  0  0  0  0
 31 23  1  0  0  0  0
 13  5  1  0  0  0  0
 21 16  1  0  0  0  0
 31 26  1  0  0  0  0
 32  5  1  0  0  0  0
  1 34  1  0  0  0  0
  1 35  1  0  0  0  0
  1 36  1  0  0  0  0
 10 37  1  0  0  0  0
 10 38  1  0  0  0  0
 10 39  1  0  0  0  0
 14 40  1  6  0  0  0
 15 41  1  0  0  0  0
 17 42  1  0  0  0  0
 18 43  1  0  0  0  0
 19 44  1  0  0  0  0
 20 45  1  0  0  0  0
 24 46  1  0  0  0  0
 25 47  1  0  0  0  0
 27 48  1  0  0  0  0
 28 49  1  0  0  0  0
 29 50  1  0  0  0  0
 30 51  1  0  0  0  0
 32 52  1  1  0  0  0
 33 53  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0006096

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@]1([H])[C@]23SSS[C@](N(C2=O)C([H])([H])[H])(C(=O)N3[C@@]2([H])N([H])C3=C([H])C([H])=C([H])C([H])=C3[C@@]12C1=C([H])N([H])C2=C([H])C([H])=C([H])C([H])=C12)C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C23H20N4O3S3/c1-21-19(29)27-18-22(13-8-4-6-10-16(13)25-18,14-11-24-15-9-5-3-7-12(14)15)17(28)23(27,32-33-31-21)20(30)26(21)2/h3-11,17-18,24-25,28H,1-2H3/t17-,18+,21-,22+,23-/m0/s1

> <INCHI_KEY>
FIIJQUIYIBLWOG-PHXJMUFTSA-N

> <FORMULA>
C23H20N4O3S3

> <MOLECULAR_WEIGHT>
496.62

> <EXACT_MASS>
496.069754042

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
53

> <JCHEM_AVERAGE_POLARIZABILITY>
49.49815340595967

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,2S,3S,11R,14S)-2-hydroxy-3-(1H-indol-3-yl)-14,19-dimethyl-15,16,17-trithia-10,12,19-triazapentacyclo[12.3.2.0^{1,12}.0^{3,11}.0^{4,9}]nonadeca-4,6,8-triene-13,18-dione

> <ALOGPS_LOGP>
3.66

> <JCHEM_LOGP>
3.6496034639999997

> <ALOGPS_LOGS>
-4.04

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.576502966207153

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.028963083554256

> <JCHEM_PKA_STRONGEST_BASIC>
1.5351319077815238

> <JCHEM_POLAR_SURFACE_AREA>
88.67

> <JCHEM_REFRACTIVITY>
141.45510000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.53e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2S,3S,11R,14S)-2-hydroxy-3-(1H-indol-3-yl)-14,19-dimethyl-15,16,17-trithia-10,12,19-triazapentacyclo[12.3.2.0^{1,12}.0^{3,11}.0^{4,9}]nonadeca-4,6,8-triene-13,18-dione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 53 59  0  0  0  0  0  0  0  0999 V2000
   -4.3203   -1.8639    1.7291 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3769   -1.2185    0.8436 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3600   -0.3290    1.2790 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0758   -0.2593    2.4995 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5891    0.5518    0.3420 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5358    2.0371    0.0334 S   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5870    1.5351   -0.2318 S   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6580   -0.3036   -1.3093 S   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4587   -1.4836   -0.5794 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.8983   -2.9055   -0.8569 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1646   -1.2581   -1.2583 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7679   -2.0459   -2.1305 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3679   -0.1392   -0.9173 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2836    0.6000   -1.5201 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6788    1.9551   -1.8431 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.4037    2.7686   -1.4318 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6254    4.0756   -1.8113 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7326    4.7807   -1.3755 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5983    4.1108   -0.5459 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3663    2.7976   -0.1702 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2870    2.0909   -0.5859 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7395    0.7726   -0.4056 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5805   -0.3984   -0.3671 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5587   -1.4342   -1.3001 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4870   -2.3339   -0.9875 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.1467   -1.9733    0.1124 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1542   -2.5624    0.8158 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6339   -1.9497    1.9516 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0796   -0.7651    2.3364 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0574   -0.1403    1.6457 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5735   -0.7461    0.5087 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2028    0.8045    0.8317 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2201   -0.2450    1.6489 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4118   -1.3356    2.7091 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3539   -1.8670    1.3055 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9967   -2.9017    1.9913 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9570   -2.9910   -1.1278 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2931   -3.3792   -1.6648 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7591   -3.5278    0.0643 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1095    0.1747   -2.4453 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5885    2.1792   -2.2891 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0498    4.6254   -2.4697 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8994    5.7962   -1.6737 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4665    4.6628   -0.2044 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1290    2.3924    0.4683 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9181   -1.5461   -2.1532 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6900   -3.2221   -1.5259 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5528   -3.5023    0.4606 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4386   -2.4568    2.4804 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4658   -0.2966    3.2296 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6296    0.7904    1.9741 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1229    1.7867    1.3286 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3148    0.0927    2.5918 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  5  3  1  0
  5  6  1  6
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  1
  9 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 22 23  1  1
 23 24  2  0
 24 25  1  0
 25 26  1  0
 26 27  2  0
 27 28  1  0
 28 29  2  0
 29 30  1  0
 30 31  2  0
 22 32  1  0
 32 33  1  0
  9  2  1  0
 22 14  1  0
 31 23  1  0
 13  5  1  0
 21 16  1  0
 31 26  1  0
 32  5  1  0
  1 34  1  0
  1 35  1  0
  1 36  1  0
 10 37  1  0
 10 38  1  0
 10 39  1  0
 14 40  1  6
 15 41  1  0
 17 42  1  0
 18 43  1  0
 19 44  1  0
 20 45  1  0
 24 46  1  0
 25 47  1  0
 27 48  1  0
 28 49  1  0
 29 50  1  0
 30 51  1  0
 32 52  1  1
 33 53  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -4.320  -1.864   1.729  0.00  0.00           C+0
HETATM    2  N   UNK     0      -3.377  -1.218   0.844  0.00  0.00           N+0
HETATM    3  C   UNK     0      -2.360  -0.329   1.279  0.00  0.00           C+0
HETATM    4  O   UNK     0      -2.076  -0.259   2.499  0.00  0.00           O+0
HETATM    5  C   UNK     0      -1.589   0.552   0.342  0.00  0.00           C+0
HETATM    6  S   UNK     0      -2.536   2.037   0.033  0.00  0.00           S+0
HETATM    7  S   UNK     0      -4.587   1.535  -0.232  0.00  0.00           S+0
HETATM    8  S   UNK     0      -4.658  -0.304  -1.309  0.00  0.00           S+0
HETATM    9  C   UNK     0      -3.459  -1.484  -0.579  0.00  0.00           C+0
HETATM   10  C   UNK     0      -3.898  -2.906  -0.857  0.00  0.00           C+0
HETATM   11  C   UNK     0      -2.165  -1.258  -1.258  0.00  0.00           C+0
HETATM   12  O   UNK     0      -1.768  -2.046  -2.131  0.00  0.00           O+0
HETATM   13  N   UNK     0      -1.368  -0.139  -0.917  0.00  0.00           N+0
HETATM   14  C   UNK     0      -0.284   0.600  -1.520  0.00  0.00           C+0
HETATM   15  N   UNK     0      -0.679   1.955  -1.843  0.00  0.00           N+0
HETATM   16  C   UNK     0       0.404   2.769  -1.432  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.625   4.076  -1.811  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.733   4.781  -1.375  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.598   4.111  -0.546  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.366   2.798  -0.170  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.287   2.091  -0.586  0.00  0.00           C+0
HETATM   22  C   UNK     0       0.740   0.773  -0.406  0.00  0.00           C+0
HETATM   23  C   UNK     0       1.581  -0.398  -0.367  0.00  0.00           C+0
HETATM   24  C   UNK     0       1.559  -1.434  -1.300  0.00  0.00           C+0
HETATM   25  N   UNK     0       2.487  -2.334  -0.988  0.00  0.00           N+0
HETATM   26  C   UNK     0       3.147  -1.973   0.112  0.00  0.00           C+0
HETATM   27  C   UNK     0       4.154  -2.562   0.816  0.00  0.00           C+0
HETATM   28  C   UNK     0       4.634  -1.950   1.952  0.00  0.00           C+0
HETATM   29  C   UNK     0       4.080  -0.765   2.336  0.00  0.00           C+0
HETATM   30  C   UNK     0       3.057  -0.140   1.646  0.00  0.00           C+0
HETATM   31  C   UNK     0       2.574  -0.746   0.509  0.00  0.00           C+0
HETATM   32  C   UNK     0      -0.203   0.805   0.832  0.00  0.00           C+0
HETATM   33  O   UNK     0       0.220  -0.245   1.649  0.00  0.00           O+0
HETATM   34  H   UNK     0      -4.412  -1.336   2.709  0.00  0.00           H+0
HETATM   35  H   UNK     0      -5.354  -1.867   1.306  0.00  0.00           H+0
HETATM   36  H   UNK     0      -3.997  -2.902   1.991  0.00  0.00           H+0
HETATM   37  H   UNK     0      -4.957  -2.991  -1.128  0.00  0.00           H+0
HETATM   38  H   UNK     0      -3.293  -3.379  -1.665  0.00  0.00           H+0
HETATM   39  H   UNK     0      -3.759  -3.528   0.064  0.00  0.00           H+0
HETATM   40  H   UNK     0       0.110   0.175  -2.445  0.00  0.00           H+0
HETATM   41  H   UNK     0      -1.589   2.179  -2.289  0.00  0.00           H+0
HETATM   42  H   UNK     0      -0.050   4.625  -2.470  0.00  0.00           H+0
HETATM   43  H   UNK     0       1.899   5.796  -1.674  0.00  0.00           H+0
HETATM   44  H   UNK     0       3.466   4.663  -0.204  0.00  0.00           H+0
HETATM   45  H   UNK     0       3.129   2.392   0.468  0.00  0.00           H+0
HETATM   46  H   UNK     0       0.918  -1.546  -2.153  0.00  0.00           H+0
HETATM   47  H   UNK     0       2.690  -3.222  -1.526  0.00  0.00           H+0
HETATM   48  H   UNK     0       4.553  -3.502   0.461  0.00  0.00           H+0
HETATM   49  H   UNK     0       5.439  -2.457   2.480  0.00  0.00           H+0
HETATM   50  H   UNK     0       4.466  -0.297   3.230  0.00  0.00           H+0
HETATM   51  H   UNK     0       2.630   0.790   1.974  0.00  0.00           H+0
HETATM   52  H   UNK     0      -0.123   1.787   1.329  0.00  0.00           H+0
HETATM   53  H   UNK     0       0.315   0.093   2.592  0.00  0.00           H+0
CONECT    1    2   34   35   36                                             
CONECT    2    1    3    9                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   13   32                                             
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11    2                                             
CONECT   10    9   37   38   39                                             
CONECT   11    9   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14    5                                                  
CONECT   14   13   15   22   40                                             
CONECT   15   14   16   41                                                  
CONECT   16   15   17   21                                                  
CONECT   17   16   18   42                                                  
CONECT   18   17   19   43                                                  
CONECT   19   18   20   44                                                  
CONECT   20   19   21   45                                                  
CONECT   21   20   22   16                                                  
CONECT   22   21   23   32   14                                             
CONECT   23   22   24   31                                                  
CONECT   24   23   25   46                                                  
CONECT   25   24   26   47                                                  
CONECT   26   25   27   31                                                  
CONECT   27   26   28   48                                                  
CONECT   28   27   29   49                                                  
CONECT   29   28   30   50                                                  
CONECT   30   29   31   51                                                  
CONECT   31   30   23   26                                                  
CONECT   32   22   33    5   52                                             
CONECT   33   32   53                                                       
CONECT   34    1                                                            
CONECT   35    1                                                            
CONECT   36    1                                                            
CONECT   37   10                                                            
CONECT   38   10                                                            
CONECT   39   10                                                            
CONECT   40   14                                                            
CONECT   41   15                                                            
CONECT   42   17                                                            
CONECT   43   18                                                            
CONECT   44   19                                                            
CONECT   45   20                                                            
CONECT   46   24                                                            
CONECT   47   25                                                            
CONECT   48   27                                                            
CONECT   49   28                                                            
CONECT   50   29                                                            
CONECT   51   30                                                            
CONECT   52   32                                                            
CONECT   53   33                                                            
MASTER        0    0    0    0    0    0    0    0   53    0  118    0
END

RDKit          3D

53 59  0  0  0  0  0  0  0  0999 V2000
   -4.3203   -1.8639    1.7291 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3769   -1.2185    0.8436 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3600   -0.3290    1.2790 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0758   -0.2593    2.4995 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5891    0.5518    0.3420 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5358    2.0371    0.0334 S   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5870    1.5351   -0.2318 S   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6580   -0.3036   -1.3093 S   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4587   -1.4836   -0.5794 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.8983   -2.9055   -0.8569 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1646   -1.2581   -1.2583 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.2836    0.6000   -1.5201 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6788    1.9551   -1.8431 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.4037    2.7686   -1.4318 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.7326    4.7807   -1.3755 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5983    4.1108   -0.5459 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3663    2.7976   -0.1702 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2870    2.0909   -0.5859 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7395    0.7726   -0.4056 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5805   -0.3984   -0.3671 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5587   -1.4342   -1.3001 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4870   -2.3339   -0.9875 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.1467   -1.9733    0.1124 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1542   -2.5624    0.8158 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6339   -1.9497    1.9516 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0796   -0.7651    2.3364 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0574   -0.1403    1.6457 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5735   -0.7461    0.5087 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2028    0.8045    0.8317 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2201   -0.2450    1.6489 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4118   -1.3356    2.7091 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3539   -1.8670    1.3055 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9967   -2.9017    1.9913 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9570   -2.9910   -1.1278 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2931   -3.3792   -1.6648 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7591   -3.5278    0.0643 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1095    0.1747   -2.4453 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5885    2.1792   -2.2891 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0498    4.6254   -2.4697 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8994    5.7962   -1.6737 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4665    4.6628   -0.2044 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1290    2.3924    0.4683 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9181   -1.5461   -2.1532 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6900   -3.2221   -1.5259 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5528   -3.5023    0.4606 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4386   -2.4568    2.4804 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4658   -0.2966    3.2296 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6296    0.7904    1.9741 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1229    1.7867    1.3286 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3148    0.0927    2.5918 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  5  3  1  0
  5  6  1  6
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  1
  9 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 22 23  1  1
 23 24  2  0
 24 25  1  0
 25 26  1  0
 26 27  2  0
 27 28  1  0
 28 29  2  0
 29 30  1  0
 30 31  2  0
 22 32  1  0
 32 33  1  0
  9  2  1  0
 22 14  1  0
 31 23  1  0
 13  5  1  0
 21 16  1  0
 31 26  1  0
 32  5  1  0
  1 34  1  0
  1 35  1  0
  1 36  1  0
 10 37  1  0
 10 38  1  0
 10 39  1  0
 14 40  1  6
 15 41  1  0
 17 42  1  0
 18 43  1  0
 19 44  1  0
 20 45  1  0
 24 46  1  0
 25 47  1  0
 27 48  1  0
 28 49  1  0
 29 50  1  0
 30 51  1  0
 32 52  1  1
 33 53  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₃H₂₀N₄O₃S₃

Average Mass

496.6200 Da

Monoisotopic Mass

496.06975 Da

IUPAC Name

(1S,2S,3S,11R,14S)-2-hydroxy-3-(1H-indol-3-yl)-14,19-dimethyl-15,16,17-trithia-10,12,19-triazapentacyclo[12.3.2.0^{1,12}.0^{3,11}.0^{4,9}]nonadeca-4,6,8-triene-13,18-dione

Traditional Name

(1S,2S,3S,11R,14S)-2-hydroxy-3-(1H-indol-3-yl)-14,19-dimethyl-15,16,17-trithia-10,12,19-triazapentacyclo[12.3.2.0^{1,12}.0^{3,11}.0^{4,9}]nonadeca-4,6,8-triene-13,18-dione

CAS Registry Number

Not Available

SMILES

CN1C(=O)[C@]23SSS[C@@]1(C)C(=O)N2[C@H]1NC2=CC=CC=C2[C@]1([C@@H]3O)C1=CNC2=CC=CC=C12

InChI Identifier

InChI=1S/C23H20N4O3S3/c1-21-19(29)27-18-22(13-8-4-6-10-16(13)25-18,14-11-24-15-9-5-3-7-12(14)15)17(28)23(27,32-33-31-21)20(30)26(21)2/h3-11,17-18,24-25,28H,1-2H3/t17-,18+,21-,22+,23-/m0/s1

InChI Key

FIIJQUIYIBLWOG-PHXJMUFTSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Clonostachys rosea	LOTUS Database	35616633
Gliocladium	NPAtlas	16252916

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.66	ALOGPS
logP	3.65	ChemAxon
logS	-4	ALOGPS
pKa (Strongest Acidic)	13.03	ChemAxon
pKa (Strongest Basic)	1.54	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	88.67 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	141.46 m³·mol⁻¹	ChemAxon
Polarizability	49.5 Å³	ChemAxon
Number of Rings	7	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA009451

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78441083

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

71582616

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Gliocladine D (NP0006096)

MOL for NP0006096 (Gliocladine D)

3D MOL for NP0006096 (Gliocladine D)

3D SDF for NP0006096 (Gliocladine D)

3D-SDF for NP0006096 (Gliocladine D)

PDB for NP0006096 (Gliocladine D)

3D PDB for NP0006096 (Gliocladine D)

SMILES for NP0006096 (Gliocladine D)

INCHI for NP0006096 (Gliocladine D)

Structure for NP0006096 (Gliocladine D)

3D Structure for NP0006096 (Gliocladine D)