NP-MRD: Showing NP-Card for Phaeochromycin D (NP0006002)

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Record Information

Version

2.0

Created at

2020-12-09 03:05:27 UTC

Updated at

2021-07-15 16:53:34 UTC

NP-MRD ID

NP0006002

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Phaeochromycin D

Provided By

NPAtlas

Description

Phaeochromycin D is found in Streptomyces, Streptomyces phaeochromogenes and Streptomyces phaeochromogenes LL-PP018. Phaeochromycin D was first documented in 2005 (PMID: 16124774). Based on a literature review very few articles have been published on 5-(4-hydroxy-2-oxopentyl)-2-propyl-4H-chromen-4-one.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118243D          

 41 42  0  0  0  0            999 V2000
    6.0869    0.5160    1.3631 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6478    0.2780    1.0304 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.2917    0.7492   -0.3650 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8541    0.4846   -0.6284 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9139    1.4376   -0.3180 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5724    1.1545   -0.5791 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2995    2.0184   -0.3002 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2546   -0.0594   -1.1323 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0453   -0.3837   -1.4070 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1717    0.5397   -1.1214 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.4447    0.5014    0.3317 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7946   -0.2497    1.0276 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4759    1.3330    1.0016 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.6945    0.4627    1.2187 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3749   -0.7219    2.0751 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1676    0.0248   -0.0175 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3362   -1.6382   -1.9752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3261   -2.5200   -2.2478 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9845   -2.2278   -1.9858 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2619   -0.9981   -1.4296 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5045   -0.6606   -1.1556 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7498   -0.3345    1.0687 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4397    1.4677    0.8935 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1620    0.6723    2.4757 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0255    0.8262    1.7668 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4540   -0.8108    1.1306 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9086    0.2111   -1.1163 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5074    1.8419   -0.4063 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1428    2.3904    0.1141 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0112    1.5875   -1.4087 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0919    0.1557   -1.6873 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0939    1.6231    1.9845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7481    2.2296    0.4217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4512    1.0888    1.7360 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9374   -0.3797    3.0470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7306   -1.4485    1.5603 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3126   -1.2624    2.3324 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0005    0.4838   -0.2293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3804   -1.8460   -2.1729 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6342   -3.4744   -2.6890 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7607   -2.9318   -2.2065 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
  9 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21  4  1  0  0  0  0
 20  8  1  0  0  0  0
  1 22  1  0  0  0  0
  1 23  1  0  0  0  0
  1 24  1  0  0  0  0
  2 25  1  0  0  0  0
  2 26  1  0  0  0  0
  3 27  1  0  0  0  0
  3 28  1  0  0  0  0
  5 29  1  0  0  0  0
 10 30  1  0  0  0  0
 10 31  1  0  0  0  0
 13 32  1  0  0  0  0
 13 33  1  0  0  0  0
 14 34  1  1  0  0  0
 15 35  1  0  0  0  0
 15 36  1  0  0  0  0
 15 37  1  0  0  0  0
 16 38  1  0  0  0  0
 17 39  1  0  0  0  0
 18 40  1  0  0  0  0
 19 41  1  0  0  0  0
M  END

     RDKit          3D

 41 42  0  0  0  0  0  0  0  0999 V2000
    6.0869    0.5160    1.3631 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6478    0.2780    1.0304 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2917    0.7492   -0.3650 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8541    0.4846   -0.6284 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9139    1.4376   -0.3180 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5724    1.1545   -0.5791 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2995    2.0184   -0.3002 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2546   -0.0594   -1.1323 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0453   -0.3837   -1.4070 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1717    0.5397   -1.1214 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4447    0.5014    0.3317 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7946   -0.2497    1.0276 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4759    1.3330    1.0016 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6945    0.4627    1.2187 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3749   -0.7219    2.0751 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1676    0.0248   -0.0175 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3362   -1.6382   -1.9752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3261   -2.5200   -2.2478 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9845   -2.2278   -1.9858 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2619   -0.9981   -1.4296 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5045   -0.6606   -1.1556 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7498   -0.3345    1.0687 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4397    1.4677    0.8935 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1620    0.6723    2.4757 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0255    0.8262    1.7668 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4540   -0.8108    1.1306 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9086    0.2111   -1.1163 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5074    1.8419   -0.4063 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1428    2.3904    0.1141 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0112    1.5875   -1.4087 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0919    0.1557   -1.6873 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0939    1.6231    1.9845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7481    2.2296    0.4217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4512    1.0888    1.7360 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9374   -0.3797    3.0470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7306   -1.4485    1.5603 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3126   -1.2624    2.3324 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0005    0.4838   -0.2293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3804   -1.8460   -2.1729 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6342   -3.4744   -2.6890 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7607   -2.9318   -2.2065 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 14 16  1  0
  9 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21  4  1  0
 20  8  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
  2 25  1  0
  2 26  1  0
  3 27  1  0
  3 28  1  0
  5 29  1  0
 10 30  1  0
 10 31  1  0
 13 32  1  0
 13 33  1  0
 14 34  1  1
 15 35  1  0
 15 36  1  0
 15 37  1  0
 16 38  1  0
 17 39  1  0
 18 40  1  0
 19 41  1  0
M  END


  Mrv1652306242118243D          

 41 42  0  0  0  0            999 V2000
    6.0869    0.5160    1.3631 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6478    0.2780    1.0304 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.2917    0.7492   -0.3650 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8541    0.4846   -0.6284 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9139    1.4376   -0.3180 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5724    1.1545   -0.5791 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2995    2.0184   -0.3002 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2546   -0.0594   -1.1323 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0453   -0.3837   -1.4070 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1717    0.5397   -1.1214 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.4447    0.5014    0.3317 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7946   -0.2497    1.0276 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4759    1.3330    1.0016 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.6945    0.4627    1.2187 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3749   -0.7219    2.0751 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1676    0.0248   -0.0175 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3362   -1.6382   -1.9752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3261   -2.5200   -2.2478 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9845   -2.2278   -1.9858 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2619   -0.9981   -1.4296 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5045   -0.6606   -1.1556 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7498   -0.3345    1.0687 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4397    1.4677    0.8935 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1620    0.6723    2.4757 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0255    0.8262    1.7668 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4540   -0.8108    1.1306 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9086    0.2111   -1.1163 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5074    1.8419   -0.4063 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1428    2.3904    0.1141 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0112    1.5875   -1.4087 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0919    0.1557   -1.6873 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0939    1.6231    1.9845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7481    2.2296    0.4217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4512    1.0888    1.7360 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9374   -0.3797    3.0470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7306   -1.4485    1.5603 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3126   -1.2624    2.3324 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0005    0.4838   -0.2293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3804   -1.8460   -2.1729 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6342   -3.4744   -2.6890 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7607   -2.9318   -2.2065 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
  9 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21  4  1  0  0  0  0
 20  8  1  0  0  0  0
  1 22  1  0  0  0  0
  1 23  1  0  0  0  0
  1 24  1  0  0  0  0
  2 25  1  0  0  0  0
  2 26  1  0  0  0  0
  3 27  1  0  0  0  0
  3 28  1  0  0  0  0
  5 29  1  0  0  0  0
 10 30  1  0  0  0  0
 10 31  1  0  0  0  0
 13 32  1  0  0  0  0
 13 33  1  0  0  0  0
 14 34  1  1  0  0  0
 15 35  1  0  0  0  0
 15 36  1  0  0  0  0
 15 37  1  0  0  0  0
 16 38  1  0  0  0  0
 17 39  1  0  0  0  0
 18 40  1  0  0  0  0
 19 41  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0006002

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@@]([H])(C([H])([H])[H])C([H])([H])C(=O)C([H])([H])C1=C2C(=O)C([H])=C(OC2=C([H])C([H])=C1[H])C([H])([H])C([H])([H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C17H20O4/c1-3-5-14-10-15(20)17-12(6-4-7-16(17)21-14)9-13(19)8-11(2)18/h4,6-7,10-11,18H,3,5,8-9H2,1-2H3/t11-/m0/s1

> <INCHI_KEY>
RNGDSOLGWNOHCR-UHFFFAOYSA-N

> <FORMULA>
C17H20O4

> <MOLECULAR_WEIGHT>
288.343

> <EXACT_MASS>
288.136159124

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
41

> <JCHEM_AVERAGE_POLARIZABILITY>
31.523772113847492

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-[(4S)-4-hydroxy-2-oxopentyl]-2-propyl-4H-chromen-4-one

> <ALOGPS_LOGP>
2.43

> <JCHEM_LOGP>
2.6423578563333336

> <ALOGPS_LOGS>
-3.77

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.515772897088084

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.288348632002965

> <JCHEM_PKA_STRONGEST_BASIC>
-2.5836711611280183

> <JCHEM_POLAR_SURFACE_AREA>
63.60000000000001

> <JCHEM_REFRACTIVITY>
81.91130000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.93e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-[(4S)-4-hydroxy-2-oxopentyl]-2-propylchromen-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 41 42  0  0  0  0  0  0  0  0999 V2000
    6.0869    0.5160    1.3631 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6478    0.2780    1.0304 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2917    0.7492   -0.3650 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8541    0.4846   -0.6284 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9139    1.4376   -0.3180 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5724    1.1545   -0.5791 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2995    2.0184   -0.3002 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2546   -0.0594   -1.1323 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0453   -0.3837   -1.4070 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1717    0.5397   -1.1214 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4447    0.5014    0.3317 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7946   -0.2497    1.0276 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4759    1.3330    1.0016 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6945    0.4627    1.2187 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3749   -0.7219    2.0751 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1676    0.0248   -0.0175 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3362   -1.6382   -1.9752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3261   -2.5200   -2.2478 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9845   -2.2278   -1.9858 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2619   -0.9981   -1.4296 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5045   -0.6606   -1.1556 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7498   -0.3345    1.0687 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4397    1.4677    0.8935 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.4540   -0.8108    1.1306 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.5074    1.8419   -0.4063 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1428    2.3904    0.1141 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0112    1.5875   -1.4087 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.4512    1.0888    1.7360 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9374   -0.3797    3.0470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7306   -1.4485    1.5603 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3126   -1.2624    2.3324 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0005    0.4838   -0.2293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3804   -1.8460   -2.1729 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6342   -3.4744   -2.6890 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0
  2  3  1  0
  3  4  1  0
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 21  4  1  0
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 18 40  1  0
 19 41  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       6.087   0.516   1.363  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.648   0.278   1.030  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.292   0.749  -0.365  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.854   0.485  -0.628  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.914   1.438  -0.318  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.572   1.155  -0.579  0.00  0.00           C+0
HETATM    7  O   UNK     0      -0.300   2.018  -0.300  0.00  0.00           O+0
HETATM    8  C   UNK     0       0.255  -0.059  -1.132  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.045  -0.384  -1.407  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.172   0.540  -1.121  0.00  0.00           C+0
HETATM   11  C   UNK     0      -2.445   0.501   0.332  0.00  0.00           C+0
HETATM   12  O   UNK     0      -1.795  -0.250   1.028  0.00  0.00           O+0
HETATM   13  C   UNK     0      -3.476   1.333   1.002  0.00  0.00           C+0
HETATM   14  C   UNK     0      -4.694   0.463   1.219  0.00  0.00           C+0
HETATM   15  C   UNK     0      -4.375  -0.722   2.075  0.00  0.00           C+0
HETATM   16  O   UNK     0      -5.168   0.025  -0.018  0.00  0.00           O+0
HETATM   17  C   UNK     0      -1.336  -1.638  -1.975  0.00  0.00           C+0
HETATM   18  C   UNK     0      -0.326  -2.520  -2.248  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.985  -2.228  -1.986  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.262  -0.998  -1.430  0.00  0.00           C+0
HETATM   21  O   UNK     0       2.505  -0.661  -1.156  0.00  0.00           O+0
HETATM   22  H   UNK     0       6.750  -0.335   1.069  0.00  0.00           H+0
HETATM   23  H   UNK     0       6.440   1.468   0.894  0.00  0.00           H+0
HETATM   24  H   UNK     0       6.162   0.672   2.476  0.00  0.00           H+0
HETATM   25  H   UNK     0       4.026   0.826   1.767  0.00  0.00           H+0
HETATM   26  H   UNK     0       4.454  -0.811   1.131  0.00  0.00           H+0
HETATM   27  H   UNK     0       4.909   0.211  -1.116  0.00  0.00           H+0
HETATM   28  H   UNK     0       4.507   1.842  -0.406  0.00  0.00           H+0
HETATM   29  H   UNK     0       2.143   2.390   0.114  0.00  0.00           H+0
HETATM   30  H   UNK     0      -2.011   1.587  -1.409  0.00  0.00           H+0
HETATM   31  H   UNK     0      -3.092   0.156  -1.687  0.00  0.00           H+0
HETATM   32  H   UNK     0      -3.094   1.623   1.984  0.00  0.00           H+0
HETATM   33  H   UNK     0      -3.748   2.230   0.422  0.00  0.00           H+0
HETATM   34  H   UNK     0      -5.451   1.089   1.736  0.00  0.00           H+0
HETATM   35  H   UNK     0      -3.937  -0.380   3.047  0.00  0.00           H+0
HETATM   36  H   UNK     0      -3.731  -1.448   1.560  0.00  0.00           H+0
HETATM   37  H   UNK     0      -5.313  -1.262   2.332  0.00  0.00           H+0
HETATM   38  H   UNK     0      -6.000   0.484  -0.229  0.00  0.00           H+0
HETATM   39  H   UNK     0      -2.380  -1.846  -2.173  0.00  0.00           H+0
HETATM   40  H   UNK     0      -0.634  -3.474  -2.689  0.00  0.00           H+0
HETATM   41  H   UNK     0       1.761  -2.932  -2.207  0.00  0.00           H+0
CONECT    1    2   22   23   24                                             
CONECT    2    1    3   25   26                                             
CONECT    3    2    4   27   28                                             
CONECT    4    3    5   21                                                  
CONECT    5    4    6   29                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   20                                                  
CONECT    9    8   10   17                                                  
CONECT   10    9   11   30   31                                             
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   32   33                                             
CONECT   14   13   15   16   34                                             
CONECT   15   14   35   36   37                                             
CONECT   16   14   38                                                       
CONECT   17    9   18   39                                                  
CONECT   18   17   19   40                                                  
CONECT   19   18   20   41                                                  
CONECT   20   19   21    8                                                  
CONECT   21   20    4                                                       
CONECT   22    1                                                            
CONECT   23    1                                                            
CONECT   24    1                                                            
CONECT   25    2                                                            
CONECT   26    2                                                            
CONECT   27    3                                                            
CONECT   28    3                                                            
CONECT   29    5                                                            
CONECT   30   10                                                            
CONECT   31   10                                                            
CONECT   32   13                                                            
CONECT   33   13                                                            
CONECT   34   14                                                            
CONECT   35   15                                                            
CONECT   36   15                                                            
CONECT   37   15                                                            
CONECT   38   16                                                            
CONECT   39   17                                                            
CONECT   40   18                                                            
CONECT   41   19                                                            
MASTER        0    0    0    0    0    0    0    0   41    0   84    0
END

RDKit          3D

41 42  0  0  0  0  0  0  0  0999 V2000
    6.0869    0.5160    1.3631 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6478    0.2780    1.0304 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2917    0.7492   -0.3650 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8541    0.4846   -0.6284 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9139    1.4376   -0.3180 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5724    1.1545   -0.5791 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2995    2.0184   -0.3002 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2546   -0.0594   -1.1323 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0453   -0.3837   -1.4070 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1717    0.5397   -1.1214 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4447    0.5014    0.3317 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7946   -0.2497    1.0276 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4759    1.3330    1.0016 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6945    0.4627    1.2187 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3749   -0.7219    2.0751 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1676    0.0248   -0.0175 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3362   -1.6382   -1.9752 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3261   -2.5200   -2.2478 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9845   -2.2278   -1.9858 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2619   -0.9981   -1.4296 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5045   -0.6606   -1.1556 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7498   -0.3345    1.0687 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4397    1.4677    0.8935 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1620    0.6723    2.4757 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0255    0.8262    1.7668 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4540   -0.8108    1.1306 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9086    0.2111   -1.1163 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5074    1.8419   -0.4063 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1428    2.3904    0.1141 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0112    1.5875   -1.4087 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0919    0.1557   -1.6873 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0939    1.6231    1.9845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7481    2.2296    0.4217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4512    1.0888    1.7360 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9374   -0.3797    3.0470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7306   -1.4485    1.5603 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3126   -1.2624    2.3324 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0005    0.4838   -0.2293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3804   -1.8460   -2.1729 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6342   -3.4744   -2.6890 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7607   -2.9318   -2.2065 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 14 16  1  0
  9 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21  4  1  0
 20  8  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
  2 25  1  0
  2 26  1  0
  3 27  1  0
  3 28  1  0
  5 29  1  0
 10 30  1  0
 10 31  1  0
 13 32  1  0
 13 33  1  0
 14 34  1  1
 15 35  1  0
 15 36  1  0
 15 37  1  0
 16 38  1  0
 17 39  1  0
 18 40  1  0
 19 41  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₁₇H₂₀O₄

Average Mass

288.3430 Da

Monoisotopic Mass

288.13616 Da

IUPAC Name

5-[(4S)-4-hydroxy-2-oxopentyl]-2-propyl-4H-chromen-4-one

Traditional Name

5-[(4S)-4-hydroxy-2-oxopentyl]-2-propylchromen-4-one

CAS Registry Number

Not Available

SMILES

CCCC1=CC(=O)C2=C(CC(=O)CC(C)O)C=CC=C2O1

InChI Identifier

InChI=1S/C17H20O4/c1-3-5-14-10-15(20)17-12(6-4-7-16(17)21-14)9-13(19)8-11(2)18/h4,6-7,10-11,18H,3,5,8-9H2,1-2H3

InChI Key

RNGDSOLGWNOHCR-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	16124774
Streptomyces phaeochromogenes	LOTUS Database	35616633
Streptomyces phaeochromogenes LL-PP018	Bacteria	KNApSAcK

Chemical Taxonomy

Description

This compound belongs to the class of organic compounds known as chromones. These are compounds containing a benzopyran-4-one moiety.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzopyrans

Sub Class

1-benzopyrans

Direct Parent

Chromones

Alternative Parents

Substituents

Chromone
Pyranone
Beta-hydroxy ketone
Pyran
Benzenoid
Heteroaromatic compound
Secondary alcohol
Ketone
Oxacycle
Alcohol
Organic oxide
Organooxygen compound
Organic oxygen compound
Carbonyl group
Hydrocarbon derivative
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.43	ALOGPS
logP	2.64	ChemAxon
logS	-3.8	ALOGPS
pKa (Strongest Acidic)	13.29	ChemAxon
pKa (Strongest Basic)	-2.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	63.6 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	81.91 m³·mol⁻¹	ChemAxon
Polarizability	31.52 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA014093

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9883760

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11709038

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Graziani EI, Ritacco FV, Bernan VS, Telliez JB: Phaeochromycins A-E, anti-inflammatory polyketides isolated from the soil actinomycete Streptomyces phaeochromogenes LL-P018. J Nat Prod. 2005 Aug;68(8):1262-5. doi: 10.1021/np0500629. [PubMed:16124774 ]

Showing NP-Card for Phaeochromycin D (NP0006002)

MOL for NP0006002 (Phaeochromycin D)

3D MOL for NP0006002 (Phaeochromycin D)

3D SDF for NP0006002 (Phaeochromycin D)

3D-SDF for NP0006002 (Phaeochromycin D)

PDB for NP0006002 (Phaeochromycin D)

3D PDB for NP0006002 (Phaeochromycin D)

SMILES for NP0006002 (Phaeochromycin D)

INCHI for NP0006002 (Phaeochromycin D)

Structure for NP0006002 (Phaeochromycin D)

3D Structure for NP0006002 (Phaeochromycin D)