NP-MRD: Showing NP-Card for Naphthopyranomycin (NP0005886)

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Record Information

Version

1.0

Created at

2020-12-09 03:00:56 UTC

Updated at

2021-07-15 16:53:15 UTC

NP-MRD ID

NP0005886

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Naphthopyranomycin

Provided By

NPAtlas

Description

Naphthopyranomycin is found in Streptomyces sp. It was first documented in 1992 (PMID: 1592691). Based on a literature review very few articles have been published on Naphthopyranomycin.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118233D          

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M  END


  Mrv1652306242118233D          

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    7.2367    1.3923    1.3342 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.3150    1.7743    0.3111 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.3712   -0.0418    2.6278 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5893   -2.2409    0.1264 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.8643   -3.5982    1.0750 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.3551    3.5522   -0.9891 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7823    2.5016   -0.7129 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7447    4.3434    0.4763 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.6000   -0.5693   -1.7765 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2657   -0.9971   -2.9480 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.7726   -4.2108   -2.9162 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2784   -2.6291   -3.5351 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  2  0  0  0  0
 12 16  1  0  0  0  0
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 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
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 24 25  1  0  0  0  0
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 24 27  1  0  0  0  0
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 28 29  1  0  0  0  0
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 28 33  1  0  0  0  0
 33 34  2  0  0  0  0
 15  4  1  0  0  0  0
 27 19  1  0  0  0  0
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 33 11  1  0  0  0  0
  1 35  1  0  0  0  0
  1 36  1  0  0  0  0
  1 37  1  0  0  0  0
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  2 39  1  0  0  0  0
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 29 59  1  0  0  0  0
 31 60  1  0  0  0  0
 31 61  1  0  0  0  0
 31 62  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0005886

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C2C(C([H])=C(O[C@]2([H])C([H])([H])C([H])([H])C([H])([H])[H])C([H])([H])[H])=C([H])C2=C1C(=O)C(=C(C2=O)C([H])([H])C(=O)C([H])([H])[H])[C@]1([H])OC([H])([H])[C@@]([H])(O[H])[C@@]([H])(O1)C([H])([H])O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C25H28O9/c1-4-5-17-19-13(7-12(3)33-17)8-15-20(23(19)30)24(31)21(14(22(15)29)6-11(2)27)25-32-10-16(28)18(9-26)34-25/h7-8,16-18,25-26,28,30H,4-6,9-10H2,1-3H3/t16-,17-,18+,25-/m1/s1

> <INCHI_KEY>
UYZRGLQTRZRYKC-FFUKXMTKSA-N

> <FORMULA>
C25H28O9

> <MOLECULAR_WEIGHT>
472.49

> <EXACT_MASS>
472.173332482

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
62

> <JCHEM_AVERAGE_POLARIZABILITY>
48.99888747873173

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R)-10-hydroxy-8-[(2R,4S,5R)-5-hydroxy-4-(hydroxymethyl)-1,3-dioxan-2-yl]-3-methyl-7-(2-oxopropyl)-1-propyl-1H,6H,9H-cyclohexa[g]isochromene-6,9-dione

> <ALOGPS_LOGP>
2.13

> <JCHEM_LOGP>
1.7612188609999997

> <ALOGPS_LOGS>
-3.29

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.569028153057435

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.6071528184031445

> <JCHEM_PKA_STRONGEST_BASIC>
-2.980995312210518

> <JCHEM_POLAR_SURFACE_AREA>
139.59

> <JCHEM_REFRACTIVITY>
123.29149999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.43e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R)-10-hydroxy-8-[(2R,4S,5R)-5-hydroxy-4-(hydroxymethyl)-1,3-dioxan-2-yl]-3-methyl-7-(2-oxopropyl)-1-propyl-1H-cyclohexa[g]isochromene-6,9-dione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 62 65  0  0  0  0  0  0  0  0999 V2000
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    5.0023    1.1103    0.7133 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.3811    0.5067    0.6803 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.6703   -1.0935   -1.8680 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9764   -2.5792   -1.8064 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0625   -3.1760   -2.5995 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3227   -3.3190   -1.0910 O   0  0  0  0  0  0  0  0  0  0  0  0
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    3.6000   -0.5693   -1.7765 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.9795   -3.3097   -1.9794 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7726   -4.2108   -2.9162 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2784   -2.6291   -3.5351 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  1  0
 13 15  2  0
 12 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
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 22 23  1  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 24 27  1  0
 18 28  2  0
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 29 30  1  0
 30 31  1  0
 30 32  2  0
 28 33  1  0
 33 34  2  0
 15  4  1  0
 27 19  1  0
 15  9  1  0
 33 11  1  0
  1 35  1  0
  1 36  1  0
  1 37  1  0
  2 38  1  0
  2 39  1  0
  3 40  1  0
  3 41  1  0
  4 42  1  1
  7 43  1  0
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 10 47  1  0
 14 48  1  0
 19 49  1  1
 21 50  1  0
 21 51  1  0
 22 52  1  6
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 29 58  1  0
 29 59  1  0
 31 60  1  0
 31 61  1  0
 31 62  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -4.829   3.240   0.158  0.00  0.00           C+0
HETATM    2  C   UNK     0      -4.223   2.024   0.862  0.00  0.00           C+0
HETATM    3  C   UNK     0      -5.137   0.863   0.847  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.468  -0.327   1.572  0.00  0.00           C+0
HETATM    5  O   UNK     0      -5.417  -1.392   1.506  0.00  0.00           O+0
HETATM    6  C   UNK     0      -5.473  -2.196   0.391  0.00  0.00           C+0
HETATM    7  C   UNK     0      -6.755  -2.960   0.194  0.00  0.00           C+0
HETATM    8  C   UNK     0      -4.474  -2.291  -0.447  0.00  0.00           C+0
HETATM    9  C   UNK     0      -3.259  -1.493  -0.177  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.143  -1.748  -0.942  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.955  -1.149  -0.578  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.866  -0.312   0.525  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.001  -0.067   1.281  0.00  0.00           C+0
HETATM   14  O   UNK     0      -1.995   0.734   2.378  0.00  0.00           O+0
HETATM   15  C   UNK     0      -3.197  -0.668   0.908  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.415   0.279   0.847  0.00  0.00           C+0
HETATM   17  O   UNK     0       0.509   1.037   1.841  0.00  0.00           O+0
HETATM   18  C   UNK     0       1.642   0.018   0.032  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.831   0.684   0.498  0.00  0.00           C+0
HETATM   20  O   UNK     0       2.653   2.071   0.246  0.00  0.00           O+0
HETATM   21  C   UNK     0       3.606   2.523  -0.667  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.948   2.462   0.035  0.00  0.00           C+0
HETATM   23  O   UNK     0       5.042   3.515   0.954  0.00  0.00           O+0
HETATM   24  C   UNK     0       5.002   1.110   0.713  0.00  0.00           C+0
HETATM   25  C   UNK     0       6.381   0.507   0.680  0.00  0.00           C+0
HETATM   26  O   UNK     0       7.237   1.392   1.334  0.00  0.00           O+0
HETATM   27  O   UNK     0       4.058   0.300   0.081  0.00  0.00           O+0
HETATM   28  C   UNK     0       1.551  -0.761  -0.991  0.00  0.00           C+0
HETATM   29  C   UNK     0       2.670  -1.093  -1.868  0.00  0.00           C+0
HETATM   30  C   UNK     0       2.976  -2.579  -1.806  0.00  0.00           C+0
HETATM   31  C   UNK     0       4.063  -3.176  -2.599  0.00  0.00           C+0
HETATM   32  O   UNK     0       2.323  -3.319  -1.091  0.00  0.00           O+0
HETATM   33  C   UNK     0       0.246  -1.389  -1.353  0.00  0.00           C+0
HETATM   34  O   UNK     0       0.170  -2.139  -2.344  0.00  0.00           O+0
HETATM   35  H   UNK     0      -5.841   3.453   0.533  0.00  0.00           H+0
HETATM   36  H   UNK     0      -4.796   3.042  -0.937  0.00  0.00           H+0
HETATM   37  H   UNK     0      -4.125   4.082   0.378  0.00  0.00           H+0
HETATM   38  H   UNK     0      -4.072   2.335   1.912  0.00  0.00           H+0
HETATM   39  H   UNK     0      -3.315   1.774   0.311  0.00  0.00           H+0
HETATM   40  H   UNK     0      -5.331   0.559  -0.219  0.00  0.00           H+0
HETATM   41  H   UNK     0      -6.124   1.045   1.315  0.00  0.00           H+0
HETATM   42  H   UNK     0      -4.371  -0.042   2.628  0.00  0.00           H+0
HETATM   43  H   UNK     0      -7.589  -2.241   0.126  0.00  0.00           H+0
HETATM   44  H   UNK     0      -6.668  -3.601  -0.714  0.00  0.00           H+0
HETATM   45  H   UNK     0      -6.864  -3.598   1.075  0.00  0.00           H+0
HETATM   46  H   UNK     0      -4.539  -2.930  -1.305  0.00  0.00           H+0
HETATM   47  H   UNK     0      -2.165  -2.395  -1.812  0.00  0.00           H+0
HETATM   48  H   UNK     0      -1.350   1.250   2.848  0.00  0.00           H+0
HETATM   49  H   UNK     0       2.817   0.659   1.642  0.00  0.00           H+0
HETATM   50  H   UNK     0       3.621   1.805  -1.507  0.00  0.00           H+0
HETATM   51  H   UNK     0       3.355   3.552  -0.989  0.00  0.00           H+0
HETATM   52  H   UNK     0       5.782   2.502  -0.713  0.00  0.00           H+0
HETATM   53  H   UNK     0       4.745   4.343   0.476  0.00  0.00           H+0
HETATM   54  H   UNK     0       4.694   1.268   1.763  0.00  0.00           H+0
HETATM   55  H   UNK     0       6.708   0.242  -0.328  0.00  0.00           H+0
HETATM   56  H   UNK     0       6.334  -0.405   1.339  0.00  0.00           H+0
HETATM   57  H   UNK     0       7.070   1.317   2.311  0.00  0.00           H+0
HETATM   58  H   UNK     0       3.600  -0.569  -1.777  0.00  0.00           H+0
HETATM   59  H   UNK     0       2.266  -0.997  -2.948  0.00  0.00           H+0
HETATM   60  H   UNK     0       4.979  -3.310  -1.979  0.00  0.00           H+0
HETATM   61  H   UNK     0       3.773  -4.211  -2.916  0.00  0.00           H+0
HETATM   62  H   UNK     0       4.278  -2.629  -3.535  0.00  0.00           H+0
CONECT    1    2   35   36   37                                             
CONECT    2    1    3   38   39                                             
CONECT    3    2    4   40   41                                             
CONECT    4    3    5   15   42                                             
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6   43   44   45                                             
CONECT    8    6    9   46                                                  
CONECT    9    8   10   15                                                  
CONECT   10    9   11   47                                                  
CONECT   11   10   12   33                                                  
CONECT   12   11   13   16                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13   48                                                       
CONECT   15   13    4    9                                                  
CONECT   16   12   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19   28                                                  
CONECT   19   18   20   27   49                                             
CONECT   20   19   21                                                       
CONECT   21   20   22   50   51                                             
CONECT   22   21   23   24   52                                             
CONECT   23   22   53                                                       
CONECT   24   22   25   27   54                                             
CONECT   25   24   26   55   56                                             
CONECT   26   25   57                                                       
CONECT   27   24   19                                                       
CONECT   28   18   29   33                                                  
CONECT   29   28   30   58   59                                             
CONECT   30   29   31   32                                                  
CONECT   31   30   60   61   62                                             
CONECT   32   30                                                            
CONECT   33   28   34   11                                                  
CONECT   34   33                                                            
CONECT   35    1                                                            
CONECT   36    1                                                            
CONECT   37    1                                                            
CONECT   38    2                                                            
CONECT   39    2                                                            
CONECT   40    3                                                            
CONECT   41    3                                                            
CONECT   42    4                                                            
CONECT   43    7                                                            
CONECT   44    7                                                            
CONECT   45    7                                                            
CONECT   46    8                                                            
CONECT   47   10                                                            
CONECT   48   14                                                            
CONECT   49   19                                                            
CONECT   50   21                                                            
CONECT   51   21                                                            
CONECT   52   22                                                            
CONECT   53   23                                                            
CONECT   54   24                                                            
CONECT   55   25                                                            
CONECT   56   25                                                            
CONECT   57   26                                                            
CONECT   58   29                                                            
CONECT   59   29                                                            
CONECT   60   31                                                            
CONECT   61   31                                                            
CONECT   62   31                                                            
MASTER        0    0    0    0    0    0    0    0   62    0  130    0
END

RDKit          3D

62 65  0  0  0  0  0  0  0  0999 V2000
   -4.8293    3.2405    0.1582 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2230    2.0239    0.8624 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1367    0.8632    0.8468 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4679   -0.3273    1.5716 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.4172   -1.3916    1.5064 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4729   -2.1956    0.3909 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7550   -2.9599    0.1937 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4745   -2.2913   -0.4474 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2590   -1.4931   -0.1766 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1435   -1.7479   -0.9422 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9545   -1.1493   -0.5781 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8657   -0.3124    0.5250 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0013   -0.0672    1.2810 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9948    0.7342    2.3784 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1974   -0.6681    0.9079 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4148    0.2787    0.8471 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5090    1.0371    1.8412 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6416    0.0178    0.0324 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8311    0.6838    0.4981 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6532    2.0709    0.2461 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6057    2.5227   -0.6670 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9476    2.4621    0.0353 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.0423    3.5146    0.9541 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0023    1.1103    0.7133 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.3811    0.5067    0.6803 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2367    1.3923    1.3342 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0581    0.3002    0.0814 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5513   -0.7608   -0.9913 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6703   -1.0935   -1.8680 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9764   -2.5792   -1.8064 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0625   -3.1760   -2.5995 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3227   -3.3190   -1.0910 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2460   -1.3885   -1.3535 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1703   -2.1392   -2.3443 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8409    3.4528    0.5332 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7964    3.0420   -0.9370 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1252    4.0822    0.3777 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0715    2.3353    1.9119 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3150    1.7743    0.3111 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3314    0.5592   -0.2194 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1237    1.0453    1.3153 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3712   -0.0418    2.6278 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5893   -2.2409    0.1264 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6685   -3.6009   -0.7135 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8643   -3.5982    1.0750 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5392   -2.9302   -1.3046 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1654   -2.3946   -1.8117 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3500    1.2495    2.8481 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8169    0.6591    1.6423 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6207    1.8051   -1.5070 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3551    3.5522   -0.9891 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7823    2.5016   -0.7129 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7447    4.3434    0.4763 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6936    1.2677    1.7632 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7085    0.2422   -0.3282 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3342   -0.4052    1.3391 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0697    1.3169    2.3106 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6000   -0.5693   -1.7765 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2657   -0.9971   -2.9480 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9795   -3.3097   -1.9794 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7726   -4.2108   -2.9162 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2784   -2.6291   -3.5351 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  1  0
 13 15  2  0
 12 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 24 27  1  0
 18 28  2  0
 28 29  1  0
 29 30  1  0
 30 31  1  0
 30 32  2  0
 28 33  1  0
 33 34  2  0
 15  4  1  0
 27 19  1  0
 15  9  1  0
 33 11  1  0
  1 35  1  0
  1 36  1  0
  1 37  1  0
  2 38  1  0
  2 39  1  0
  3 40  1  0
  3 41  1  0
  4 42  1  1
  7 43  1  0
  7 44  1  0
  7 45  1  0
  8 46  1  0
 10 47  1  0
 14 48  1  0
 19 49  1  1
 21 50  1  0
 21 51  1  0
 22 52  1  6
 23 53  1  0
 24 54  1  1
 25 55  1  0
 25 56  1  0
 26 57  1  0
 29 58  1  0
 29 59  1  0
 31 60  1  0
 31 61  1  0
 31 62  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₅H₂₈O₉

Average Mass

472.4900 Da

Monoisotopic Mass

472.17333 Da

IUPAC Name

(1R)-10-hydroxy-8-[(2R,4S,5R)-5-hydroxy-4-(hydroxymethyl)-1,3-dioxan-2-yl]-3-methyl-7-(2-oxopropyl)-1-propyl-1H,6H,9H-cyclohexa[g]isochromene-6,9-dione

Traditional Name

(1R)-10-hydroxy-8-[(2R,4S,5R)-5-hydroxy-4-(hydroxymethyl)-1,3-dioxan-2-yl]-3-methyl-7-(2-oxopropyl)-1-propyl-1H-cyclohexa[g]isochromene-6,9-dione

CAS Registry Number

Not Available

SMILES

CCC[C@H]1OC(C)=CC2=C1C(O)=C1C(=O)C([C@@H]3OC[C@@H](O)[C@H](CO)O3)=C(CC(C)=O)C(=O)C1=C2

InChI Identifier

InChI=1S/C25H28O9/c1-4-5-17-19-13(7-12(3)33-17)8-15-20(23(19)30)24(31)21(14(22(15)29)6-11(2)27)25-32-10-16(28)18(9-26)34-25/h7-8,16-18,25-26,28,30H,4-6,9-10H2,1-3H3/t16-,17-,18+,25-/m1/s1

InChI Key

UYZRGLQTRZRYKC-FFUKXMTKSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces sp.	NPAtlas	1592691

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.13	ALOGPS
logP	1.76	ChemAxon
logS	-3.3	ALOGPS
pKa (Strongest Acidic)	7.61	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	139.59 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	123.29 m³·mol⁻¹	ChemAxon
Polarizability	49 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

NPAtlas ID

NPA020631

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00017256

Chemspider ID

59701852

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139588905

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Shindo K, Kawai H: A novel antibiotic, naphthopyranomycin. J Antibiot (Tokyo). 1992 Apr;45(4):584-6. doi: 10.7164/antibiotics.45.584. [PubMed:1592691 ]

Showing NP-Card for Naphthopyranomycin (NP0005886)

MOL for NP0005886 (Naphthopyranomycin)

3D MOL for NP0005886 (Naphthopyranomycin)

3D SDF for NP0005886 (Naphthopyranomycin)

3D-SDF for NP0005886 (Naphthopyranomycin)

PDB for NP0005886 (Naphthopyranomycin)

3D PDB for NP0005886 (Naphthopyranomycin)

SMILES for NP0005886 (Naphthopyranomycin)

INCHI for NP0005886 (Naphthopyranomycin)

Structure for NP0005886 (Naphthopyranomycin)

3D Structure for NP0005886 (Naphthopyranomycin)