NP-MRD: Showing NP-Card for (S)-Malic acid-1-O-beta-D-glucopyranoside (NP0005845)

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Record Information

Version

1.0

Created at

2020-12-09 02:59:17 UTC

Updated at

2021-07-15 16:53:08 UTC

NP-MRD ID

NP0005845

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(S)-Malic acid-1-O-beta-D-glucopyranoside

Provided By

NPAtlas

Description

(S)-Malic acid-1-O-beta-D-glucopyranoside is found in Morchella and Morchella deliciosa. It was first documented in 2005 (PMID: 15884853). Based on a literature review very few articles have been published on (2S)-2-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}butanedioic acid (PMID: 34383398) (PMID: 34383397) (PMID: 34383396) (PMID: 34384147).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118233D          

 36 36  0  0  0  0            999 V2000
   -2.3484    1.1791   -1.5984 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7966    1.5754   -0.4974 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3678    2.8323   -0.4478 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7038    0.7137    0.6784 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0389   -0.6175    0.3835 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7695   -0.3533   -0.0735 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2587   -0.7541    0.7117 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0407    0.2788    1.2203 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6385    0.9758    0.1724 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3467    2.2225    0.6727 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4244    3.0775    1.3036 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6709    0.1361   -0.5455 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7976   -0.0954    0.2086 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9819   -1.1315   -0.9994 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8819   -2.0258   -1.5678 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1785   -1.7776    0.1113 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5423   -2.8668   -0.4205 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8868   -1.3240   -0.5919 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4518   -1.6338   -1.7162 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1805   -1.6450   -0.2510 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2932    2.9463   -0.8458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6962    0.5586    1.1865 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0711    1.2110    1.4674 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0267   -1.1484    1.3814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1966   -1.2459    1.6219 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8700    1.3007   -0.5338 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1639    2.0028    1.3721 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7694    2.8105   -0.1661 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9488    3.6432    0.6460 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9814    0.6726   -1.4651 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6337   -0.3162    1.1401 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2536   -0.8292   -1.7925 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5141   -2.3961   -2.4073 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9131   -2.0667    0.9048 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4183   -3.5399    0.3049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4006   -2.3694    0.4324 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  9 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
  5 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 16  7  1  0  0  0  0
  3 21  1  0  0  0  0
  4 22  1  0  0  0  0
  4 23  1  0  0  0  0
  5 24  1  1  0  0  0
  7 25  1  1  0  0  0
  9 26  1  6  0  0  0
 10 27  1  0  0  0  0
 10 28  1  0  0  0  0
 11 29  1  0  0  0  0
 12 30  1  6  0  0  0
 13 31  1  0  0  0  0
 14 32  1  6  0  0  0
 15 33  1  0  0  0  0
 16 34  1  1  0  0  0
 17 35  1  0  0  0  0
 20 36  1  0  0  0  0
M  END

     RDKit          3D

 36 36  0  0  0  0  0  0  0  0999 V2000
   -2.3484    1.1791   -1.5984 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7966    1.5754   -0.4974 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3678    2.8323   -0.4478 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7038    0.7137    0.6784 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0389   -0.6175    0.3835 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7695   -0.3533   -0.0735 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2587   -0.7541    0.7117 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0407    0.2788    1.2203 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6385    0.9758    0.1724 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3467    2.2225    0.6727 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4244    3.0775    1.3036 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6709    0.1361   -0.5455 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7976   -0.0954    0.2086 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9819   -1.1315   -0.9994 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8819   -2.0258   -1.5678 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1785   -1.7776    0.1113 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5423   -2.8668   -0.4205 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8868   -1.3240   -0.5919 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4518   -1.6338   -1.7162 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1805   -1.6450   -0.2510 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2932    2.9463   -0.8458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6962    0.5586    1.1865 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0711    1.2110    1.4674 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0267   -1.1484    1.3814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1966   -1.2459    1.6219 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8700    1.3007   -0.5338 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1639    2.0028    1.3721 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7694    2.8105   -0.1661 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9488    3.6432    0.6460 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9814    0.6726   -1.4651 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6337   -0.3162    1.1401 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2536   -0.8292   -1.7925 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5141   -2.3961   -2.4073 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9131   -2.0667    0.9048 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4183   -3.5399    0.3049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4006   -2.3694    0.4324 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
  9 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  1  0
  5 18  1  0
 18 19  2  0
 18 20  1  0
 16  7  1  0
  3 21  1  0
  4 22  1  0
  4 23  1  0
  5 24  1  1
  7 25  1  1
  9 26  1  6
 10 27  1  0
 10 28  1  0
 11 29  1  0
 12 30  1  6
 13 31  1  0
 14 32  1  6
 15 33  1  0
 16 34  1  1
 17 35  1  0
 20 36  1  0
M  END


  Mrv1652306242118233D          

 36 36  0  0  0  0            999 V2000
   -2.3484    1.1791   -1.5984 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7966    1.5754   -0.4974 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3678    2.8323   -0.4478 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7038    0.7137    0.6784 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0389   -0.6175    0.3835 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7695   -0.3533   -0.0735 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2587   -0.7541    0.7117 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0407    0.2788    1.2203 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6385    0.9758    0.1724 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3467    2.2225    0.6727 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4244    3.0775    1.3036 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6709    0.1361   -0.5455 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7976   -0.0954    0.2086 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9819   -1.1315   -0.9994 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8819   -2.0258   -1.5678 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1785   -1.7776    0.1113 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5423   -2.8668   -0.4205 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8868   -1.3240   -0.5919 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4518   -1.6338   -1.7162 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1805   -1.6450   -0.2510 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2932    2.9463   -0.8458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6962    0.5586    1.1865 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0711    1.2110    1.4674 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0267   -1.1484    1.3814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1966   -1.2459    1.6219 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8700    1.3007   -0.5338 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1639    2.0028    1.3721 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7694    2.8105   -0.1661 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9488    3.6432    0.6460 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9814    0.6726   -1.4651 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6337   -0.3162    1.1401 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2536   -0.8292   -1.7925 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5141   -2.3961   -2.4073 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9131   -2.0667    0.9048 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4183   -3.5399    0.3049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4006   -2.3694    0.4324 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  9 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
  5 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 16  7  1  0  0  0  0
  3 21  1  0  0  0  0
  4 22  1  0  0  0  0
  4 23  1  0  0  0  0
  5 24  1  1  0  0  0
  7 25  1  1  0  0  0
  9 26  1  6  0  0  0
 10 27  1  0  0  0  0
 10 28  1  0  0  0  0
 11 29  1  0  0  0  0
 12 30  1  6  0  0  0
 13 31  1  0  0  0  0
 14 32  1  6  0  0  0
 15 33  1  0  0  0  0
 16 34  1  1  0  0  0
 17 35  1  0  0  0  0
 20 36  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0005845

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)C([H])([H])[C@]([H])(O[C@]1([H])O[C@@]([H])(C([H])([H])O[H])[C@@]([H])(O[H])[C@@]([H])(O[H])[C@]1([H])O[H])C(=O)O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C10H16O10/c11-2-4-6(14)7(15)8(16)10(20-4)19-3(9(17)18)1-5(12)13/h3-4,6-8,10-11,14-16H,1-2H2,(H,12,13)(H,17,18)/t3-,4-,6+,7+,8-,10+/m0/s1

> <INCHI_KEY>
OCIAPZWBJQRATB-AMRFRDDCSA-N

> <FORMULA>
C10H16O10

> <MOLECULAR_WEIGHT>
296.228

> <EXACT_MASS>
296.074346715

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
25.54896952552588

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-2-{[(2S,3S,4R,5S,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}butanedioic acid

> <ALOGPS_LOGP>
-2.03

> <JCHEM_LOGP>
-2.884477073666667

> <ALOGPS_LOGS>
-0.46

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
5.101081270293712

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.272986259153279

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9810837108995054

> <JCHEM_POLAR_SURFACE_AREA>
173.98

> <JCHEM_REFRACTIVITY>
57.2885

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.02e+02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-{[(2S,3S,4R,5S,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}butanedioic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 36 36  0  0  0  0  0  0  0  0999 V2000
   -2.3484    1.1791   -1.5984 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7966    1.5754   -0.4974 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3678    2.8323   -0.4478 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7038    0.7137    0.6784 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0389   -0.6175    0.3835 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7695   -0.3533   -0.0735 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2587   -0.7541    0.7117 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0407    0.2788    1.2203 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6385    0.9758    0.1724 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3467    2.2225    0.6727 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4244    3.0775    1.3036 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6709    0.1361   -0.5455 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7976   -0.0954    0.2086 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9819   -1.1315   -0.9994 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8819   -2.0258   -1.5678 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1785   -1.7776    0.1113 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5423   -2.8668   -0.4205 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8868   -1.3240   -0.5919 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4518   -1.6338   -1.7162 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1805   -1.6450   -0.2510 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2932    2.9463   -0.8458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6962    0.5586    1.1865 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0711    1.2110    1.4674 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0267   -1.1484    1.3814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1966   -1.2459    1.6219 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8700    1.3007   -0.5338 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1639    2.0028    1.3721 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7694    2.8105   -0.1661 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9488    3.6432    0.6460 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9814    0.6726   -1.4651 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6337   -0.3162    1.1401 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2536   -0.8292   -1.7925 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5141   -2.3961   -2.4073 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9131   -2.0667    0.9048 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4183   -3.5399    0.3049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4006   -2.3694    0.4324 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
  9 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  1  0
  5 18  1  0
 18 19  2  0
 18 20  1  0
 16  7  1  0
  3 21  1  0
  4 22  1  0
  4 23  1  0
  5 24  1  1
  7 25  1  1
  9 26  1  6
 10 27  1  0
 10 28  1  0
 11 29  1  0
 12 30  1  6
 13 31  1  0
 14 32  1  6
 15 33  1  0
 16 34  1  1
 17 35  1  0
 20 36  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  O   UNK     0      -2.348   1.179  -1.598  0.00  0.00           O+0
HETATM    2  C   UNK     0      -2.797   1.575  -0.497  0.00  0.00           C+0
HETATM    3  O   UNK     0      -3.368   2.832  -0.448  0.00  0.00           O+0
HETATM    4  C   UNK     0      -2.704   0.714   0.678  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.039  -0.618   0.384  0.00  0.00           C+0
HETATM    6  O   UNK     0      -0.770  -0.353  -0.074  0.00  0.00           O+0
HETATM    7  C   UNK     0       0.259  -0.754   0.712  0.00  0.00           C+0
HETATM    8  O   UNK     0       1.041   0.279   1.220  0.00  0.00           O+0
HETATM    9  C   UNK     0       1.639   0.976   0.172  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.347   2.223   0.673  0.00  0.00           C+0
HETATM   11  O   UNK     0       1.424   3.078   1.304  0.00  0.00           O+0
HETATM   12  C   UNK     0       2.671   0.136  -0.546  0.00  0.00           C+0
HETATM   13  O   UNK     0       3.798  -0.095   0.209  0.00  0.00           O+0
HETATM   14  C   UNK     0       1.982  -1.131  -0.999  0.00  0.00           C+0
HETATM   15  O   UNK     0       2.882  -2.026  -1.568  0.00  0.00           O+0
HETATM   16  C   UNK     0       1.179  -1.778   0.111  0.00  0.00           C+0
HETATM   17  O   UNK     0       0.542  -2.867  -0.421  0.00  0.00           O+0
HETATM   18  C   UNK     0      -2.887  -1.324  -0.592  0.00  0.00           C+0
HETATM   19  O   UNK     0      -2.452  -1.634  -1.716  0.00  0.00           O+0
HETATM   20  O   UNK     0      -4.181  -1.645  -0.251  0.00  0.00           O+0
HETATM   21  H   UNK     0      -4.293   2.946  -0.846  0.00  0.00           H+0
HETATM   22  H   UNK     0      -3.696   0.559   1.187  0.00  0.00           H+0
HETATM   23  H   UNK     0      -2.071   1.211   1.467  0.00  0.00           H+0
HETATM   24  H   UNK     0      -2.027  -1.148   1.381  0.00  0.00           H+0
HETATM   25  H   UNK     0      -0.197  -1.246   1.622  0.00  0.00           H+0
HETATM   26  H   UNK     0       0.870   1.301  -0.534  0.00  0.00           H+0
HETATM   27  H   UNK     0       3.164   2.003   1.372  0.00  0.00           H+0
HETATM   28  H   UNK     0       2.769   2.811  -0.166  0.00  0.00           H+0
HETATM   29  H   UNK     0       0.949   3.643   0.646  0.00  0.00           H+0
HETATM   30  H   UNK     0       2.981   0.673  -1.465  0.00  0.00           H+0
HETATM   31  H   UNK     0       3.634  -0.316   1.140  0.00  0.00           H+0
HETATM   32  H   UNK     0       1.254  -0.829  -1.793  0.00  0.00           H+0
HETATM   33  H   UNK     0       2.514  -2.396  -2.407  0.00  0.00           H+0
HETATM   34  H   UNK     0       1.913  -2.067   0.905  0.00  0.00           H+0
HETATM   35  H   UNK     0       0.418  -3.540   0.305  0.00  0.00           H+0
HETATM   36  H   UNK     0      -4.401  -2.369   0.432  0.00  0.00           H+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2   21                                                       
CONECT    4    2    5   22   23                                             
CONECT    5    4    6   18   24                                             
CONECT    6    5    7                                                       
CONECT    7    6    8   16   25                                             
CONECT    8    7    9                                                       
CONECT    9    8   10   12   26                                             
CONECT   10    9   11   27   28                                             
CONECT   11   10   29                                                       
CONECT   12    9   13   14   30                                             
CONECT   13   12   31                                                       
CONECT   14   12   15   16   32                                             
CONECT   15   14   33                                                       
CONECT   16   14   17    7   34                                             
CONECT   17   16   35                                                       
CONECT   18    5   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   36                                                       
CONECT   21    3                                                            
CONECT   22    4                                                            
CONECT   23    4                                                            
CONECT   24    5                                                            
CONECT   25    7                                                            
CONECT   26    9                                                            
CONECT   27   10                                                            
CONECT   28   10                                                            
CONECT   29   11                                                            
CONECT   30   12                                                            
CONECT   31   13                                                            
CONECT   32   14                                                            
CONECT   33   15                                                            
CONECT   34   16                                                            
CONECT   35   17                                                            
CONECT   36   20                                                            
MASTER        0    0    0    0    0    0    0    0   36    0   72    0
END

RDKit          3D

36 36  0  0  0  0  0  0  0  0999 V2000
   -2.3484    1.1791   -1.5984 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7966    1.5754   -0.4974 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3678    2.8323   -0.4478 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7038    0.7137    0.6784 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0389   -0.6175    0.3835 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7695   -0.3533   -0.0735 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2587   -0.7541    0.7117 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0407    0.2788    1.2203 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6385    0.9758    0.1724 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3467    2.2225    0.6727 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4244    3.0775    1.3036 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6709    0.1361   -0.5455 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7976   -0.0954    0.2086 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9819   -1.1315   -0.9994 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8819   -2.0258   -1.5678 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1785   -1.7776    0.1113 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5423   -2.8668   -0.4205 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8868   -1.3240   -0.5919 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4518   -1.6338   -1.7162 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1805   -1.6450   -0.2510 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2932    2.9463   -0.8458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6962    0.5586    1.1865 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0711    1.2110    1.4674 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0267   -1.1484    1.3814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1966   -1.2459    1.6219 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8700    1.3007   -0.5338 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1639    2.0028    1.3721 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7694    2.8105   -0.1661 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9488    3.6432    0.6460 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9814    0.6726   -1.4651 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6337   -0.3162    1.1401 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2536   -0.8292   -1.7925 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5141   -2.3961   -2.4073 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9131   -2.0667    0.9048 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4183   -3.5399    0.3049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4006   -2.3694    0.4324 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
  9 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  1  0
  5 18  1  0
 18 19  2  0
 18 20  1  0
 16  7  1  0
  3 21  1  0
  4 22  1  0
  4 23  1  0
  5 24  1  1
  7 25  1  1
  9 26  1  6
 10 27  1  0
 10 28  1  0
 11 29  1  0
 12 30  1  6
 13 31  1  0
 14 32  1  6
 15 33  1  0
 16 34  1  1
 17 35  1  0
 20 36  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
(2S)-2-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}butanedioate	Generator

Chemical Formula

C₁₀H₁₆O₁₀

Average Mass

296.2280 Da

Monoisotopic Mass

296.07435 Da

IUPAC Name

(2S)-2-{[(2S,3S,4R,5S,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}butanedioic acid

Traditional Name

(2S)-2-{[(2S,3S,4R,5S,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}butanedioic acid

CAS Registry Number

Not Available

SMILES

OCC1OC(O[C@@H](CC(O)=O)C(O)=O)C(O)C(O)C1O

InChI Identifier

InChI=1S/C10H16O10/c11-2-4-6(14)7(15)8(16)10(20-4)19-3(9(17)18)1-5(12)13/h3-4,6-8,10-11,14-16H,1-2H2,(H,12,13)(H,17,18)/t3-,4?,6?,7?,8?,10?/m0/s1

InChI Key

OCIAPZWBJQRATB-AMRFRDDCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Morchella	NPAtlas	15884853
Morchella deliciosa	LOTUS Database	35616633

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-2	ALOGPS
logP	-2.9	ChemAxon
logS	-0.46	ALOGPS
pKa (Strongest Acidic)	3.27	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	173.98 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	57.29 m³·mol⁻¹	ChemAxon
Polarizability	25.55 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA002048

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78445036

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

135134727

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Rotzoll N, Dunkel A, Hofmann T: Activity-guided identification of (S)-malic acid 1-O-D-glucopyranoside (morelid) and gamma-aminobutyric acid as contributors to umami taste and mouth-drying oral sensation of morel mushrooms (Morchella deliciosa Fr.). J Agric Food Chem. 2005 May 18;53(10):4149-56. doi: 10.1021/jf050056i. [PubMed:15884853 ]
Mitchell PM: The cost-effectiveness of what in health and care?. 2021 Feb. [PubMed:34383398 ]
Authors unspecified: Ozanimod. 2012. [PubMed:34383397 ]
Authors unspecified: Ponesimod. 2012. [PubMed:34383396 ]
Lee J, Cho Y, Choi KH, Hwang I, Oh YL: Metastatic leiomyosarcoma of the thyroid gland: cytologic findings and differential diagnosis. J Pathol Transl Med. 2021 Aug 13. pii: jptm.2021.06.23. doi: 10.4132/jptm.2021.06.23. [PubMed:34384147 ]

Showing NP-Card for (S)-Malic acid-1-O-beta-D-glucopyranoside (NP0005845)

MOL for NP0005845 ((S)-Malic acid-1-O-beta-D-glucopyranoside)

3D MOL for NP0005845 ((S)-Malic acid-1-O-beta-D-glucopyranoside)

3D SDF for NP0005845 ((S)-Malic acid-1-O-beta-D-glucopyranoside)

3D-SDF for NP0005845 ((S)-Malic acid-1-O-beta-D-glucopyranoside)

PDB for NP0005845 ((S)-Malic acid-1-O-beta-D-glucopyranoside)

3D PDB for NP0005845 ((S)-Malic acid-1-O-beta-D-glucopyranoside)

SMILES for NP0005845 ((S)-Malic acid-1-O-beta-D-glucopyranoside)

INCHI for NP0005845 ((S)-Malic acid-1-O-beta-D-glucopyranoside)

Structure for NP0005845 ((S)-Malic acid-1-O-beta-D-glucopyranoside)

3D Structure for NP0005845 ((S)-Malic acid-1-O-beta-D-glucopyranoside)