NP-MRD: Showing NP-Card for Psychrophilin D (NP0005820)

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Record Information

Version

2.0

Created at

2020-12-09 02:58:16 UTC

Updated at

2021-07-15 16:53:04 UTC

NP-MRD ID

NP0005820

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Psychrophilin D

Provided By

NPAtlas

Description

Psychrophilin D is found in Penicillium and Penicillium albidum. Psychrophilin D was first documented in 2005 (PMID: 15835725). Based on a literature review very few articles have been published on Psychrophilin D.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118233D          

 57 60  0  0  0  0            999 V2000
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M  CHG  2  10   1  12  -1
M  END

     RDKit          3D

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M  CHG  2  10   1  12  -1
M  END


  Mrv1652306242118233D          

 57 60  0  0  0  0            999 V2000
    4.1820   -1.6281   -1.5545 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.6404    0.7745    2.1024 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5483   -2.5189   -1.6121 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2078   -1.8215   -1.1774 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2918   -1.1525   -2.5510 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8266   -0.8823    0.3661 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0983    1.1578   -1.9430 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3537    0.4800   -0.9458 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1585    1.4449   -0.1295 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7815   -0.6670   -1.9052 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8055   -1.7773   -0.5409 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1090   -0.2580   -0.4555 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0231    1.7386   -1.0433 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3661    3.0942    1.9365 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9843    4.0403    0.4781 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8418    3.5703    2.1388 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3827    0.5355    2.4764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6897   -1.3009   -1.6647 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4694    0.1354   -3.4780 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1056    2.6448   -3.3464 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9672    3.5352   -1.3677 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6838   -4.2557    0.4172 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2310   -6.1258    0.7774 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9925   -5.8128    1.6510 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7894   -3.5763    2.2120 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8415   -1.3227    3.0427 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
  9 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 16 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 32  5  1  0  0  0  0
 22 14  1  0  0  0  0
 30 25  1  0  0  0  0
 22 17  1  0  0  0  0
  1 34  1  0  0  0  0
  1 35  1  0  0  0  0
  1 36  1  0  0  0  0
  2 37  1  1  0  0  0
  3 38  1  0  0  0  0
  3 39  1  0  0  0  0
  3 40  1  0  0  0  0
  4 41  1  0  0  0  0
  4 42  1  0  0  0  0
  5 43  1  6  0  0  0
  6 44  1  0  0  0  0
  9 45  1  1  0  0  0
 13 46  1  0  0  0  0
 13 47  1  0  0  0  0
 15 48  1  0  0  0  0
 18 49  1  0  0  0  0
 19 50  1  0  0  0  0
 20 51  1  0  0  0  0
 21 52  1  0  0  0  0
 26 53  1  0  0  0  0
 27 54  1  0  0  0  0
 28 55  1  0  0  0  0
 29 56  1  0  0  0  0
 31 57  1  0  0  0  0
M  CHG  2  10   1  12  -1
M  END
> <DATABASE_ID>
NP0005820

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]N1C2=C([H])C([H])=C([H])C([H])=C2C(=O)N2C([H])=C(C3=C([H])C([H])=C([H])C([H])=C23)C([H])([H])[C@@]([H])(C(=O)N([H])[C@]([H])(C1=O)C([H])([H])C([H])(C([H])([H])[H])C([H])([H])[H])[N+]([O-])=O

> <INCHI_IDENTIFIER>
InChI=1S/C24H24N4O5/c1-14(2)11-19-22(29)25-18-9-5-3-8-17(18)24(31)27-13-15(16-7-4-6-10-20(16)27)12-21(28(32)33)23(30)26-19/h3-10,13-14,19,21H,11-12H2,1-2H3,(H,25,29)(H,26,30)/t19-,21-/m0/s1

> <INCHI_KEY>
KGMJPYKOPYIKIO-FPOVZHCZSA-N

> <FORMULA>
C24H24N4O5

> <MOLECULAR_WEIGHT>
448.479

> <EXACT_MASS>
448.174669889

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
57

> <JCHEM_AVERAGE_POLARIZABILITY>
45.88654560834537

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
{[(11S,14S)-11-(2-methylpropyl)-2,10,13-trioxo-1,9,12-triazatetracyclo[14.6.1.0^{3,8}.0^{17,22}]tricosa-3,5,7,16(23),17,19,21-heptaen-14-yl]nitro}-lambda1-oxidanyl

> <ALOGPS_LOGP>
3.27

> <JCHEM_LOGP>
3.1833013426666668

> <ALOGPS_LOGS>
-4.54

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
11.942897680660643

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.994432501834347

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9027101472964754

> <JCHEM_POLAR_SURFACE_AREA>
123.33999999999997

> <JCHEM_REFRACTIVITY>
120.99849999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.30e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(11S,14S)-11-(2-methylpropyl)-2,10,13-trioxo-1,9,12-triazatetracyclo[14.6.1.0^{3,8}.0^{17,22}]tricosa-3,5,7,16(23),17,19,21-heptaen-14-ylnitro]-lambda1-oxidanyl

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 57 60  0  0  0  0  0  0  0  0999 V2000
    4.1820   -1.6281   -1.5545 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4992   -0.5435   -0.6710 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.2268    0.6991   -0.9500 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0883   -0.7164   -0.8144 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0808    0.1491   -0.0979 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1492    1.5208   -0.4322 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.4012    2.6563   -0.2128 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0031    3.2703   -1.3090 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0696    3.3751    0.9721 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2502    4.8106    0.8359 N   0  0  0  0  0  4  0  0  0  0  0  0
    0.9608    5.4347    1.6111 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3255    5.4275   -0.2639 O   0  0  0  0  0  1  0  0  0  0  0  0
   -1.5745    3.2526    1.1551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0486    1.8701    0.7870 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8720    0.6798    1.4183 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3696   -0.2942    0.6552 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8909    0.2912   -0.4967 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5446   -0.2393   -1.6267 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9734    0.6029   -2.6351 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7849    1.9608   -2.5796 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1466    2.4777   -1.4751 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7048    1.6344   -0.4409 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3736   -1.7333    0.8300 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5930   -2.2301    0.7083 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3183   -2.6878    1.0994 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6804   -4.0238    0.8256 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8804   -5.1156    1.0152 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3754   -4.9424    1.5075 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7696   -3.6719    1.7864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0423   -2.5065    1.5973 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6237   -1.3135    1.9611 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.1106   -0.1462    1.3561 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6404    0.7745    2.1024 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5483   -2.5189   -1.6121 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2078   -1.8215   -1.1774 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2918   -1.1525   -2.5510 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8266   -0.8823    0.3661 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0983    1.1578   -1.9430 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3537    0.4800   -0.9458 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1585    1.4449   -0.1295 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7815   -0.6670   -1.9052 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8055   -1.7773   -0.5409 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1090   -0.2580   -0.4555 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0231    1.7386   -1.0433 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3661    3.0942    1.9365 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9843    4.0403    0.4781 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8418    3.5703    2.1388 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3827    0.5355    2.4764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6897   -1.3009   -1.6647 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4694    0.1354   -3.4780 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1056    2.6448   -3.3464 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9672    3.5352   -1.3677 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6838   -4.2557    0.4172 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2310   -6.1258    0.7774 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9925   -5.8128    1.6510 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7894   -3.5763    2.2120 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8415   -1.3227    3.0427 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
  9 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 16 23  1  0
 23 24  2  0
 23 25  1  0
 25 26  2  0
 26 27  1  0
 27 28  2  0
 28 29  1  0
 29 30  2  0
 30 31  1  0
 31 32  1  0
 32 33  2  0
 32  5  1  0
 22 14  1  0
 30 25  1  0
 22 17  1  0
  1 34  1  0
  1 35  1  0
  1 36  1  0
  2 37  1  1
  3 38  1  0
  3 39  1  0
  3 40  1  0
  4 41  1  0
  4 42  1  0
  5 43  1  6
  6 44  1  0
  9 45  1  1
 13 46  1  0
 13 47  1  0
 15 48  1  0
 18 49  1  0
 19 50  1  0
 20 51  1  0
 21 52  1  0
 26 53  1  0
 27 54  1  0
 28 55  1  0
 29 56  1  0
 31 57  1  0
M  CHG  2  10   1  12  -1
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       4.182  -1.628  -1.555  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.499  -0.544  -0.671  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.227   0.699  -0.950  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.088  -0.716  -0.814  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.081   0.149  -0.098  0.00  0.00           C+0
HETATM    6  N   UNK     0       1.149   1.521  -0.432  0.00  0.00           N+0
HETATM    7  C   UNK     0       0.401   2.656  -0.213  0.00  0.00           C+0
HETATM    8  O   UNK     0      -0.003   3.270  -1.309  0.00  0.00           O+0
HETATM    9  C   UNK     0      -0.070   3.375   0.972  0.00  0.00           C+0
HETATM   10  N   UNK     0       0.250   4.811   0.836  0.00  0.00           N+1
HETATM   11  O   UNK     0       0.961   5.435   1.611  0.00  0.00           O+0
HETATM   12  O   UNK     0      -0.326   5.428  -0.264  0.00  0.00           O-1
HETATM   13  C   UNK     0      -1.575   3.253   1.155  0.00  0.00           C+0
HETATM   14  C   UNK     0      -2.049   1.870   0.787  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.872   0.680   1.418  0.00  0.00           C+0
HETATM   16  N   UNK     0      -2.370  -0.294   0.655  0.00  0.00           N+0
HETATM   17  C   UNK     0      -2.891   0.291  -0.497  0.00  0.00           C+0
HETATM   18  C   UNK     0      -3.545  -0.239  -1.627  0.00  0.00           C+0
HETATM   19  C   UNK     0      -3.973   0.603  -2.635  0.00  0.00           C+0
HETATM   20  C   UNK     0      -3.785   1.961  -2.580  0.00  0.00           C+0
HETATM   21  C   UNK     0      -3.147   2.478  -1.475  0.00  0.00           C+0
HETATM   22  C   UNK     0      -2.705   1.634  -0.441  0.00  0.00           C+0
HETATM   23  C   UNK     0      -2.374  -1.733   0.830  0.00  0.00           C+0
HETATM   24  O   UNK     0      -3.593  -2.230   0.708  0.00  0.00           O+0
HETATM   25  C   UNK     0      -1.318  -2.688   1.099  0.00  0.00           C+0
HETATM   26  C   UNK     0      -1.680  -4.024   0.826  0.00  0.00           C+0
HETATM   27  C   UNK     0      -0.880  -5.116   1.015  0.00  0.00           C+0
HETATM   28  C   UNK     0       0.375  -4.942   1.508  0.00  0.00           C+0
HETATM   29  C   UNK     0       0.770  -3.672   1.786  0.00  0.00           C+0
HETATM   30  C   UNK     0      -0.042  -2.506   1.597  0.00  0.00           C+0
HETATM   31  N   UNK     0       0.624  -1.313   1.961  0.00  0.00           N+0
HETATM   32  C   UNK     0       1.111  -0.146   1.356  0.00  0.00           C+0
HETATM   33  O   UNK     0       1.640   0.775   2.102  0.00  0.00           O+0
HETATM   34  H   UNK     0       3.548  -2.519  -1.612  0.00  0.00           H+0
HETATM   35  H   UNK     0       5.208  -1.821  -1.177  0.00  0.00           H+0
HETATM   36  H   UNK     0       4.292  -1.153  -2.551  0.00  0.00           H+0
HETATM   37  H   UNK     0       3.827  -0.882   0.366  0.00  0.00           H+0
HETATM   38  H   UNK     0       4.098   1.158  -1.943  0.00  0.00           H+0
HETATM   39  H   UNK     0       5.354   0.480  -0.946  0.00  0.00           H+0
HETATM   40  H   UNK     0       4.159   1.445  -0.130  0.00  0.00           H+0
HETATM   41  H   UNK     0       1.782  -0.667  -1.905  0.00  0.00           H+0
HETATM   42  H   UNK     0       1.806  -1.777  -0.541  0.00  0.00           H+0
HETATM   43  H   UNK     0       0.109  -0.258  -0.456  0.00  0.00           H+0
HETATM   44  H   UNK     0       2.023   1.739  -1.043  0.00  0.00           H+0
HETATM   45  H   UNK     0       0.366   3.094   1.937  0.00  0.00           H+0
HETATM   46  H   UNK     0      -1.984   4.040   0.478  0.00  0.00           H+0
HETATM   47  H   UNK     0      -1.842   3.570   2.139  0.00  0.00           H+0
HETATM   48  H   UNK     0      -1.383   0.536   2.476  0.00  0.00           H+0
HETATM   49  H   UNK     0      -3.690  -1.301  -1.665  0.00  0.00           H+0
HETATM   50  H   UNK     0      -4.469   0.135  -3.478  0.00  0.00           H+0
HETATM   51  H   UNK     0      -4.106   2.645  -3.346  0.00  0.00           H+0
HETATM   52  H   UNK     0      -2.967   3.535  -1.368  0.00  0.00           H+0
HETATM   53  H   UNK     0      -2.684  -4.256   0.417  0.00  0.00           H+0
HETATM   54  H   UNK     0      -1.231  -6.126   0.777  0.00  0.00           H+0
HETATM   55  H   UNK     0       0.993  -5.813   1.651  0.00  0.00           H+0
HETATM   56  H   UNK     0       1.789  -3.576   2.212  0.00  0.00           H+0
HETATM   57  H   UNK     0       0.842  -1.323   3.043  0.00  0.00           H+0
CONECT    1    2   34   35   36                                             
CONECT    2    1    3    4   37                                             
CONECT    3    2   38   39   40                                             
CONECT    4    2    5   41   42                                             
CONECT    5    4    6   32   43                                             
CONECT    6    5    7   44                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   13   45                                             
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10                                                            
CONECT   13    9   14   46   47                                             
CONECT   14   13   15   22                                                  
CONECT   15   14   16   48                                                  
CONECT   16   15   17   23                                                  
CONECT   17   16   18   22                                                  
CONECT   18   17   19   49                                                  
CONECT   19   18   20   50                                                  
CONECT   20   19   21   51                                                  
CONECT   21   20   22   52                                                  
CONECT   22   21   14   17                                                  
CONECT   23   16   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   30                                                  
CONECT   26   25   27   53                                                  
CONECT   27   26   28   54                                                  
CONECT   28   27   29   55                                                  
CONECT   29   28   30   56                                                  
CONECT   30   29   31   25                                                  
CONECT   31   30   32   57                                                  
CONECT   32   31   33    5                                                  
CONECT   33   32                                                            
CONECT   34    1                                                            
CONECT   35    1                                                            
CONECT   36    1                                                            
CONECT   37    2                                                            
CONECT   38    3                                                            
CONECT   39    3                                                            
CONECT   40    3                                                            
CONECT   41    4                                                            
CONECT   42    4                                                            
CONECT   43    5                                                            
CONECT   44    6                                                            
CONECT   45    9                                                            
CONECT   46   13                                                            
CONECT   47   13                                                            
CONECT   48   15                                                            
CONECT   49   18                                                            
CONECT   50   19                                                            
CONECT   51   20                                                            
CONECT   52   21                                                            
CONECT   53   26                                                            
CONECT   54   27                                                            
CONECT   55   28                                                            
CONECT   56   29                                                            
CONECT   57   31                                                            
MASTER        0    0    0    0    0    0    0    0   57    0  120    0
END

RDKit          3D

57 60  0  0  0  0  0  0  0  0999 V2000
    4.1820   -1.6281   -1.5545 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4992   -0.5435   -0.6710 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.2268    0.6991   -0.9500 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0883   -0.7164   -0.8144 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0808    0.1491   -0.0979 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1492    1.5208   -0.4322 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.4012    2.6563   -0.2128 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0031    3.2703   -1.3090 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0696    3.3751    0.9721 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2502    4.8106    0.8359 N   0  0  0  0  0  4  0  0  0  0  0  0
    0.9608    5.4347    1.6111 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3255    5.4275   -0.2639 O   0  0  0  0  0  1  0  0  0  0  0  0
   -1.5745    3.2526    1.1551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0486    1.8701    0.7870 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8720    0.6798    1.4183 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3696   -0.2942    0.6552 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8909    0.2912   -0.4967 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5446   -0.2393   -1.6267 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9734    0.6029   -2.6351 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7849    1.9608   -2.5796 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1466    2.4777   -1.4751 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7048    1.6344   -0.4409 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3736   -1.7333    0.8300 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5930   -2.2301    0.7083 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3183   -2.6878    1.0994 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6804   -4.0238    0.8256 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8804   -5.1156    1.0152 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3754   -4.9424    1.5075 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7696   -3.6719    1.7864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0423   -2.5065    1.5973 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6237   -1.3135    1.9611 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.1106   -0.1462    1.3561 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6404    0.7745    2.1024 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5483   -2.5189   -1.6121 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2078   -1.8215   -1.1774 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2918   -1.1525   -2.5510 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8266   -0.8823    0.3661 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0983    1.1578   -1.9430 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3537    0.4800   -0.9458 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1585    1.4449   -0.1295 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7815   -0.6670   -1.9052 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8055   -1.7773   -0.5409 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1090   -0.2580   -0.4555 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0231    1.7386   -1.0433 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3661    3.0942    1.9365 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9843    4.0403    0.4781 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8418    3.5703    2.1388 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3827    0.5355    2.4764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6897   -1.3009   -1.6647 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4694    0.1354   -3.4780 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1056    2.6448   -3.3464 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9672    3.5352   -1.3677 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6838   -4.2557    0.4172 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2310   -6.1258    0.7774 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9925   -5.8128    1.6510 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7894   -3.5763    2.2120 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8415   -1.3227    3.0427 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
  9 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 16 23  1  0
 23 24  2  0
 23 25  1  0
 25 26  2  0
 26 27  1  0
 27 28  2  0
 28 29  1  0
 29 30  2  0
 30 31  1  0
 31 32  1  0
 32 33  2  0
 32  5  1  0
 22 14  1  0
 30 25  1  0
 22 17  1  0
  1 34  1  0
  1 35  1  0
  1 36  1  0
  2 37  1  1
  3 38  1  0
  3 39  1  0
  3 40  1  0
  4 41  1  0
  4 42  1  0
  5 43  1  6
  6 44  1  0
  9 45  1  1
 13 46  1  0
 13 47  1  0
 15 48  1  0
 18 49  1  0
 19 50  1  0
 20 51  1  0
 21 52  1  0
 26 53  1  0
 27 54  1  0
 28 55  1  0
 29 56  1  0
 31 57  1  0
M  CHG  2  10   1  12  -1
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₄H₂₄N₄O₅

Average Mass

448.4790 Da

Monoisotopic Mass

448.17467 Da

IUPAC Name

{[(11S,14S)-11-(2-methylpropyl)-2,10,13-trioxo-1,9,12-triazatetracyclo[14.6.1.0^{3,8}.0^{17,22}]tricosa-3,5,7,16(23),17,19,21-heptaen-14-yl]nitro}-lambda1-oxidanyl

Traditional Name

[(11S,14S)-11-(2-methylpropyl)-2,10,13-trioxo-1,9,12-triazatetracyclo[14.6.1.0^{3,8}.0^{17,22}]tricosa-3,5,7,16(23),17,19,21-heptaen-14-ylnitro]-lambda1-oxidanyl

CAS Registry Number

Not Available

SMILES

CC(C)C[C@@H]1NC(=O)[C@H](CC2=CN(C3=CC=CC=C23)C(=O)C2=CC=CC=C2NC1=O)[N+]([O-])=O

InChI Identifier

InChI=1S/C24H24N4O5/c1-14(2)11-19-22(29)25-18-9-5-3-8-17(18)24(31)27-13-15(16-7-4-6-10-20(16)27)12-21(28(32)33)23(30)26-19/h3-10,13-14,19,21H,11-12H2,1-2H3,(H,25,29)(H,26,30)/t19-,21-/m0/s1

InChI Key

KGMJPYKOPYIKIO-FPOVZHCZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Penicillium	NPAtlas	15835725
Penicillium albidum	LOTUS Database	35616633

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.27	ALOGPS
logP	3.18	ChemAxon
logS	-4.5	ALOGPS
pKa (Strongest Acidic)	4.99	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	123.34 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	121 m³·mol⁻¹	ChemAxon
Polarizability	45.89 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA002922

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9537796

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11362869

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Dalsgaard PW, Larsen TO, Christophersen C: Bioactive cyclic peptides from the psychrotolerant fungus Penicillium algidum. J Antibiot (Tokyo). 2005 Feb;58(2):141-4. doi: 10.1038/ja.2005.16. [PubMed:15835725 ]

Showing NP-Card for Psychrophilin D (NP0005820)

MOL for NP0005820 (Psychrophilin D)

3D MOL for NP0005820 (Psychrophilin D)

3D SDF for NP0005820 (Psychrophilin D)

3D-SDF for NP0005820 (Psychrophilin D)

PDB for NP0005820 (Psychrophilin D)

3D PDB for NP0005820 (Psychrophilin D)

SMILES for NP0005820 (Psychrophilin D)

INCHI for NP0005820 (Psychrophilin D)

Structure for NP0005820 (Psychrophilin D)

3D Structure for NP0005820 (Psychrophilin D)