NP-MRD: Showing NP-Card for Fredericamycin B (NP0005732)

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Record Information

Version

2.0

Created at

2020-12-09 02:53:57 UTC

Updated at

2021-07-15 16:52:50 UTC

NP-MRD ID

NP0005732

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Fredericamycin B

Provided By

NPAtlas

Description

Fredericamycin B is found in Streptomyces griseus. Fredericamycin B was first documented in 2004 (PMID: 15745120). Based on a literature review very few articles have been published on Fredericamycin B.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118223D          

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M  END

     RDKit          3D

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M  END


  Mrv1652306242118223D          

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M  END
> <DATABASE_ID>
NP0005732

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C2C(=O)C3=C(C(=O)C2=C(O[H])C(OC([H])([H])[H])=C1[H])C(O[H])=C1C(=C3O[H])C2=C(C([H])=C3C([H])=C(N([H])C(=O)C3=C2O[H])C(\[H])=C(/[H])\C(\[H])=C(/[H])C([H])([H])[H])C([H])([H])C1([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C31H23NO9/c1-3-4-5-6-14-10-13-9-12-7-8-15-20(18(12)27(36)19(13)31(40)32-14)28(37)24-23(25(15)34)30(39)22-21(29(24)38)16(33)11-17(41-2)26(22)35/h3-6,9-11,33-37H,7-8H2,1-2H3,(H,32,40)/b4-3+,6-5+

> <INCHI_KEY>
YNIOLMWTOALCPA-VNKDHWASSA-N

> <FORMULA>
C31H23NO9

> <MOLECULAR_WEIGHT>
553.523

> <EXACT_MASS>
553.137281325

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
64

> <JCHEM_AVERAGE_POLARIZABILITY>
59.8532584169681

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
8,10,13,15,16-pentahydroxy-11-methoxy-3-[(1E,3E)-penta-1,3-dien-1-yl]-1,2,6,7,9,14-hexahydro-2-azahexaphene-1,9,14-trione

> <ALOGPS_LOGP>
4.21

> <JCHEM_LOGP>
7.544899596666666

> <ALOGPS_LOGS>
-4.71

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
8.260052166225957

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.121436039395686

> <JCHEM_PKA_STRONGEST_BASIC>
-4.710666716452196

> <JCHEM_POLAR_SURFACE_AREA>
173.62

> <JCHEM_REFRACTIVITY>
154.53819999999993

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.07e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
8,10,13,15,16-pentahydroxy-11-methoxy-3-[(1E,3E)-penta-1,3-dien-1-yl]-6,7-dihydro-2H-2-azahexaphene-1,9,14-trione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

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 38 64  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      11.520  -0.087  -0.001  0.00  0.00           C+0
HETATM    2  C   UNK     0      10.049   0.023   0.162  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.177  -0.424  -0.714  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.728  -0.306  -0.535  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.861  -0.744  -1.394  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.416  -0.646  -1.253  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.839  -0.058  -0.151  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.463   0.018  -0.048  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.968   0.616   1.071  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.615   0.724   1.230  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.742   0.232   0.275  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.222  -0.375  -0.861  0.00  0.00           C+0
HETATM   13  O   UNK     0       0.489  -0.884  -1.835  0.00  0.00           O+0
HETATM   14  C   UNK     0       2.620  -0.472  -1.006  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.222  -1.056  -2.100  0.00  0.00           C+0
HETATM   16  O   UNK     0       2.522  -1.532  -3.027  0.00  0.00           O+0
HETATM   17  N   UNK     0       4.579  -1.122  -2.184  0.00  0.00           N+0
HETATM   18  C   UNK     0      -0.691   0.224   0.587  0.00  0.00           C+0
HETATM   19  C   UNK     0      -1.606  -0.118  -0.367  0.00  0.00           C+0
HETATM   20  O   UNK     0      -1.315  -0.555  -1.589  0.00  0.00           O+0
HETATM   21  C   UNK     0      -2.980  -0.004  -0.072  0.00  0.00           C+0
HETATM   22  C   UNK     0      -3.374   0.444   1.154  0.00  0.00           C+0
HETATM   23  C   UNK     0      -2.451   0.792   2.124  0.00  0.00           C+0
HETATM   24  O   UNK     0      -2.928   1.241   3.351  0.00  0.00           O+0
HETATM   25  C   UNK     0      -1.102   0.684   1.847  0.00  0.00           C+0
HETATM   26  C   UNK     0      -0.163   1.010   2.956  0.00  0.00           C+0
HETATM   27  C   UNK     0       1.130   1.470   2.401  0.00  0.00           C+0
HETATM   28  C   UNK     0      -4.810   0.552   1.437  0.00  0.00           C+0
HETATM   29  O   UNK     0      -5.106   0.971   2.582  0.00  0.00           O+0
HETATM   30  C   UNK     0      -5.850   0.207   0.481  0.00  0.00           C+0
HETATM   31  C   UNK     0      -7.188   0.321   0.779  0.00  0.00           C+0
HETATM   32  O   UNK     0      -7.618   0.760   1.978  0.00  0.00           O+0
HETATM   33  C   UNK     0      -8.172  -0.020  -0.164  0.00  0.00           C+0
HETATM   34  O   UNK     0      -9.513   0.095   0.139  0.00  0.00           O+0
HETATM   35  C   UNK     0     -10.556  -0.217  -0.727  0.00  0.00           C+0
HETATM   36  C   UNK     0      -7.757  -0.463  -1.376  0.00  0.00           C+0
HETATM   37  C   UNK     0      -6.394  -0.599  -1.735  0.00  0.00           C+0
HETATM   38  O   UNK     0      -6.090  -1.051  -2.971  0.00  0.00           O+0
HETATM   39  C   UNK     0      -5.462  -0.250  -0.770  0.00  0.00           C+0
HETATM   40  C   UNK     0      -4.023  -0.355  -1.042  0.00  0.00           C+0
HETATM   41  O   UNK     0      -3.719  -0.768  -2.172  0.00  0.00           O+0
HETATM   42  H   UNK     0      11.999   0.150   0.969  0.00  0.00           H+0
HETATM   43  H   UNK     0      11.930   0.611  -0.744  0.00  0.00           H+0
HETATM   44  H   UNK     0      11.819  -1.116  -0.352  0.00  0.00           H+0
HETATM   45  H   UNK     0       9.627   0.500   1.059  0.00  0.00           H+0
HETATM   46  H   UNK     0       9.536  -0.898  -1.607  0.00  0.00           H+0
HETATM   47  H   UNK     0       7.407   0.176   0.373  0.00  0.00           H+0
HETATM   48  H   UNK     0       7.267  -1.225  -2.298  0.00  0.00           H+0
HETATM   49  H   UNK     0       5.460   0.352   0.649  0.00  0.00           H+0
HETATM   50  H   UNK     0       3.614   1.020   1.861  0.00  0.00           H+0
HETATM   51  H   UNK     0       0.615  -1.345  -2.691  0.00  0.00           H+0
HETATM   52  H   UNK     0       5.014  -1.576  -3.035  0.00  0.00           H+0
HETATM   53  H   UNK     0      -1.811  -0.831  -2.389  0.00  0.00           H+0
HETATM   54  H   UNK     0      -2.393   1.509   4.124  0.00  0.00           H+0
HETATM   55  H   UNK     0      -0.610   1.909   3.480  0.00  0.00           H+0
HETATM   56  H   UNK     0      -0.069   0.166   3.673  0.00  0.00           H+0
HETATM   57  H   UNK     0       1.915   1.546   3.197  0.00  0.00           H+0
HETATM   58  H   UNK     0       0.994   2.546   2.061  0.00  0.00           H+0
HETATM   59  H   UNK     0      -7.251   1.060   2.805  0.00  0.00           H+0
HETATM   60  H   UNK     0     -10.290   0.085  -1.759  0.00  0.00           H+0
HETATM   61  H   UNK     0     -11.485   0.332  -0.401  0.00  0.00           H+0
HETATM   62  H   UNK     0     -10.839  -1.286  -0.746  0.00  0.00           H+0
HETATM   63  H   UNK     0      -8.463  -0.740  -2.140  0.00  0.00           H+0
HETATM   64  H   UNK     0      -5.282  -1.225  -3.440  0.00  0.00           H+0
CONECT    1    2   42   43   44                                             
CONECT    2    1    3   45                                                  
CONECT    3    2    4   46                                                  
CONECT    4    3    5   47                                                  
CONECT    5    4    6   48                                                  
CONECT    6    5    7   17                                                  
CONECT    7    6    8   49                                                  
CONECT    8    7    9   14                                                  
CONECT    9    8   10   50                                                  
CONECT   10    9   11   27                                                  
CONECT   11   10   12   18                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12   51                                                       
CONECT   14   12   15    8                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15    6   52                                                  
CONECT   18   11   19   25                                                  
CONECT   19   18   20   21                                                  
CONECT   20   19   53                                                       
CONECT   21   19   22   40                                                  
CONECT   22   21   23   28                                                  
CONECT   23   22   24   25                                                  
CONECT   24   23   54                                                       
CONECT   25   23   26   18                                                  
CONECT   26   25   27   55   56                                             
CONECT   27   26   10   57   58                                             
CONECT   28   22   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31   39                                                  
CONECT   31   30   32   33                                                  
CONECT   32   31   59                                                       
CONECT   33   31   34   36                                                  
CONECT   34   33   35                                                       
CONECT   35   34   60   61   62                                             
CONECT   36   33   37   63                                                  
CONECT   37   36   38   39                                                  
CONECT   38   37   64                                                       
CONECT   39   37   40   30                                                  
CONECT   40   39   41   21                                                  
CONECT   41   40                                                            
CONECT   42    1                                                            
CONECT   43    1                                                            
CONECT   44    1                                                            
CONECT   45    2                                                            
CONECT   46    3                                                            
CONECT   47    4                                                            
CONECT   48    5                                                            
CONECT   49    7                                                            
CONECT   50    9                                                            
CONECT   51   13                                                            
CONECT   52   17                                                            
CONECT   53   20                                                            
CONECT   54   24                                                            
CONECT   55   26                                                            
CONECT   56   26                                                            
CONECT   57   27                                                            
CONECT   58   27                                                            
CONECT   59   32                                                            
CONECT   60   35                                                            
CONECT   61   35                                                            
CONECT   62   35                                                            
CONECT   63   36                                                            
CONECT   64   38                                                            
MASTER        0    0    0    0    0    0    0    0   64    0  138    0
END

RDKit          3D

64 69  0  0  0  0  0  0  0  0999 V2000
   11.5198   -0.0869   -0.0012 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0493    0.0226    0.1624 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1772   -0.4235   -0.7135 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7284   -0.3061   -0.5345 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8609   -0.7435   -1.3937 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4162   -0.6462   -1.2526 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8386   -0.0583   -0.1512 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4630    0.0181   -0.0477 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9676    0.6161    1.0714 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6147    0.7236    1.2305 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7423    0.2316    0.2752 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2222   -0.3745   -0.8607 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4887   -0.8836   -1.8349 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6199   -0.4717   -1.0060 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2220   -1.0561   -2.1000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5215   -1.5319   -3.0273 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5792   -1.1221   -2.1842 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6912    0.2235    0.5873 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6064   -0.1179   -0.3673 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3151   -0.5545   -1.5890 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9797   -0.0042   -0.0722 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3742    0.4443    1.1541 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4515    0.7924    2.1238 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9275    1.2410    3.3510 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1020    0.6836    1.8468 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1627    1.0096    2.9563 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1301    1.4698    2.4005 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8098    0.5524    1.4369 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1058    0.9712    2.5823 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8500    0.2074    0.4811 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1875    0.3205    0.7785 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6182    0.7595    1.9781 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1715   -0.0197   -0.1636 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5134    0.0954    0.1393 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5555   -0.2170   -0.7269 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7573   -0.4634   -1.3760 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3936   -0.5989   -1.7348 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0902   -1.0508   -2.9708 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4616   -0.2501   -0.7696 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0227   -0.3545   -1.0424 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7190   -0.7677   -2.1716 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.9994    0.1497    0.9687 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.9300    0.6108   -0.7435 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8186   -1.1156   -0.3519 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.6273    0.5005    1.0594 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.5360   -0.8984   -1.6068 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4066    0.1755    0.3726 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2667   -1.2250   -2.2980 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4597    0.3521    0.6488 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6137    1.0201    1.8608 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6152   -1.3449   -2.6906 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0141   -1.5761   -3.0352 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8105   -0.8309   -2.3895 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3931    1.5088    4.1242 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6098    1.9091    3.4804 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0691    0.1660    3.6729 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9145    1.5462    3.1975 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9944    2.5461    2.0614 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2506    1.0599    2.8052 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2895    0.0852   -1.7591 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4850    0.3323   -0.4009 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.8391   -1.2863   -0.7459 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4631   -0.7397   -2.1402 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2815   -1.2248   -3.4403 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  1  0
 12 14  2  0
 14 15  1  0
 15 16  2  0
 15 17  1  0
 11 18  1  0
 18 19  2  0
 19 20  1  0
 19 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  1  0
 23 25  2  0
 25 26  1  0
 26 27  1  0
 22 28  1  0
 28 29  2  0
 28 30  1  0
 30 31  2  0
 31 32  1  0
 31 33  1  0
 33 34  1  0
 34 35  1  0
 33 36  2  0
 36 37  1  0
 37 38  1  0
 37 39  2  0
 39 40  1  0
 40 41  2  0
 17  6  1  0
 25 18  1  0
 39 30  1  0
 14  8  1  0
 40 21  1  0
 27 10  1  0
  1 42  1  0
  1 43  1  0
  1 44  1  0
  2 45  1  0
  3 46  1  0
  4 47  1  0
  5 48  1  0
  7 49  1  0
  9 50  1  0
 13 51  1  0
 17 52  1  0
 20 53  1  0
 24 54  1  0
 26 55  1  0
 26 56  1  0
 27 57  1  0
 27 58  1  0
 32 59  1  0
 35 60  1  0
 35 61  1  0
 35 62  1  0
 36 63  1  0
 38 64  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₃₁H₂₃NO₉

Average Mass

553.5230 Da

Monoisotopic Mass

553.13728 Da

IUPAC Name

8,10,13,15,16-pentahydroxy-11-methoxy-3-[(1E,3E)-penta-1,3-dien-1-yl]-1,2,6,7,9,14-hexahydro-2-azahexaphene-1,9,14-trione

Traditional Name

8,10,13,15,16-pentahydroxy-11-methoxy-3-[(1E,3E)-penta-1,3-dien-1-yl]-6,7-dihydro-2H-2-azahexaphene-1,9,14-trione

CAS Registry Number

Not Available

SMILES

COC1=C(O)C2=C(C(O)=C1)C(=O)C1=C(O)C3=C(CCC4=C3C(O)=C3C(=O)NC(\C=C\C=C\C)=CC3=C4)C(O)=C1C2=O

InChI Identifier

InChI=1S/C31H23NO9/c1-3-4-5-6-14-10-13-9-12-7-8-15-20(18(12)27(36)19(13)31(40)32-14)28(37)24-23(25(15)34)30(39)22-21(29(24)38)16(33)11-17(41-2)26(22)35/h3-6,9-11,33-37H,7-8H2,1-2H3,(H,32,40)/b4-3+,6-5+

InChI Key

YNIOLMWTOALCPA-VNKDHWASSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces griseus	NPAtlas	15745120

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.21	ALOGPS
logP	7.54	ChemAxon
logS	-4.7	ALOGPS
pKa (Strongest Acidic)	7.12	ChemAxon
pKa (Strongest Basic)	-4.7	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	173.62 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	154.54 m³·mol⁻¹	ChemAxon
Polarizability	59.85 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA003338

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9343971

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11168876

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Sontag B, Muller JG, Hansske FG: Fredericamycin B and C from Streptomyces griseus: structure elucidation after 23 years. J Antibiot (Tokyo). 2004 Dec;57(12):823-8. doi: 10.7164/antibiotics.57.823. [PubMed:15745120 ]

Showing NP-Card for Fredericamycin B (NP0005732)

MOL for NP0005732 (Fredericamycin B)

3D MOL for NP0005732 (Fredericamycin B)

3D SDF for NP0005732 (Fredericamycin B)

3D-SDF for NP0005732 (Fredericamycin B)

PDB for NP0005732 (Fredericamycin B)

3D PDB for NP0005732 (Fredericamycin B)

SMILES for NP0005732 (Fredericamycin B)

INCHI for NP0005732 (Fredericamycin B)

Structure for NP0005732 (Fredericamycin B)

3D Structure for NP0005732 (Fredericamycin B)