NP-MRD: Showing NP-Card for Cyclo-(D-Leu-L-Trp) (NP0005713)

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Record Information

Version

2.0

Created at

2020-12-09 02:53:14 UTC

Updated at

2021-07-15 16:52:47 UTC

NP-MRD ID

NP0005713

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Cyclo-(D-Leu-L-Trp)

Provided By

NPAtlas

Description

(3S,6R)-3-[(1H-indol-3-yl)methyl]-6-(2-methylpropyl)-3,6-dihydropyrazine-2,5-diol belongs to the class of organic compounds known as alpha amino acids and derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon), or a derivative thereof. Cyclo-(D-Leu-L-Trp) is found in Penicillium and Penicillium brevicompactum. Cyclo-(D-Leu-L-Trp) was first documented in 2005 (PMID: 15730251). Based on a literature review very few articles have been published on (3S,6R)-3-[(1H-indol-3-yl)methyl]-6-(2-methylpropyl)-3,6-dihydropyrazine-2,5-diol.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118223D          

 43 45  0  0  0  0            999 V2000
    4.4384   -0.1332   -1.5762 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5885    0.1221   -0.0890 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.9858   -0.2285    0.3879 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5420   -0.6812    0.6292 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1887   -0.2667    0.1841 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1323   -1.0515    0.8342 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1989   -0.6381    0.5862 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0939   -1.5425    0.6506 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5294    0.7642    0.2706 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2950    0.9321   -1.0168 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.5715    0.1810   -0.9012 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9262   -1.0284   -1.4551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1995   -1.3308   -1.0806 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6915   -0.3666   -0.3039 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8962   -0.1690    0.3328 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1286    0.9650    1.0963 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1477    1.9191    1.2292 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9326    1.7117    0.5824 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7010    0.5765   -0.1811 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6131    1.6393    0.3076 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9018    1.1325    0.6318 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7155    1.8383    1.2531 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4267   -0.2104   -2.0781 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9257   -1.1035   -1.7219 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8147    0.6420   -2.0646 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4698    1.2043    0.0516 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8961   -0.5066    1.4629 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4350   -1.0681   -0.1388 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6365    0.6675    0.3579 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7099   -1.7666    0.4386 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6300   -0.5687    1.7328 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0591   -0.3150   -0.8909 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3795   -1.8629    1.4391 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1926    1.1102    1.1163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5635    2.0122   -1.1425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7424    0.5665   -1.8938 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2957   -1.6255   -2.0772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7259   -2.1851   -1.3541 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6788   -0.9118    0.2349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0656    1.0983    1.5791 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2579    2.8262    1.8070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1422    2.4468    0.6708 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4876    2.6467    0.0989 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
  9 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21  5  1  0  0  0  0
 19 11  1  0  0  0  0
 19 14  1  0  0  0  0
  1 23  1  0  0  0  0
  1 24  1  0  0  0  0
  1 25  1  0  0  0  0
  2 26  1  6  0  0  0
  3 27  1  0  0  0  0
  3 28  1  0  0  0  0
  3 29  1  0  0  0  0
  4 30  1  0  0  0  0
  4 31  1  0  0  0  0
  5 32  1  6  0  0  0
  6 33  1  0  0  0  0
  9 34  1  1  0  0  0
 10 35  1  0  0  0  0
 10 36  1  0  0  0  0
 12 37  1  0  0  0  0
 13 38  1  0  0  0  0
 15 39  1  0  0  0  0
 16 40  1  0  0  0  0
 17 41  1  0  0  0  0
 18 42  1  0  0  0  0
 20 43  1  0  0  0  0
M  END

     RDKit          3D

 43 45  0  0  0  0  0  0  0  0999 V2000
    4.4384   -0.1332   -1.5762 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5885    0.1221   -0.0890 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.9858   -0.2285    0.3879 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5420   -0.6812    0.6292 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1887   -0.2667    0.1841 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1323   -1.0515    0.8342 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1989   -0.6381    0.5862 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0939   -1.5425    0.6506 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5294    0.7642    0.2706 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2950    0.9321   -1.0168 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5715    0.1810   -0.9012 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9262   -1.0284   -1.4551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1995   -1.3308   -1.0806 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6915   -0.3666   -0.3039 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8962   -0.1690    0.3328 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1286    0.9650    1.0963 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1477    1.9191    1.2292 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9326    1.7117    0.5824 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7010    0.5765   -0.1811 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6131    1.6393    0.3076 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9018    1.1325    0.6318 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7155    1.8383    1.2531 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4267   -0.2104   -2.0781 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9257   -1.1035   -1.7219 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8147    0.6420   -2.0646 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4698    1.2043    0.0516 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8961   -0.5066    1.4629 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4350   -1.0681   -0.1388 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6365    0.6675    0.3579 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7099   -1.7666    0.4386 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6300   -0.5687    1.7328 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0591   -0.3150   -0.8909 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3795   -1.8629    1.4391 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1926    1.1102    1.1163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5635    2.0122   -1.1425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7424    0.5665   -1.8938 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2957   -1.6255   -2.0772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7259   -2.1851   -1.3541 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6788   -0.9118    0.2349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0656    1.0983    1.5791 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2579    2.8262    1.8070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1422    2.4468    0.6708 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4876    2.6467    0.0989 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
  9 20  1  0
 20 21  1  0
 21 22  2  0
 21  5  1  0
 19 11  1  0
 19 14  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  2 26  1  6
  3 27  1  0
  3 28  1  0
  3 29  1  0
  4 30  1  0
  4 31  1  0
  5 32  1  6
  6 33  1  0
  9 34  1  1
 10 35  1  0
 10 36  1  0
 12 37  1  0
 13 38  1  0
 15 39  1  0
 16 40  1  0
 17 41  1  0
 18 42  1  0
 20 43  1  0
M  END


  Mrv1652306242118223D          

 43 45  0  0  0  0            999 V2000
    4.4384   -0.1332   -1.5762 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5885    0.1221   -0.0890 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.9858   -0.2285    0.3879 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5420   -0.6812    0.6292 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1887   -0.2667    0.1841 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1323   -1.0515    0.8342 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1989   -0.6381    0.5862 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0939   -1.5425    0.6506 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5294    0.7642    0.2706 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2950    0.9321   -1.0168 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.5715    0.1810   -0.9012 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9262   -1.0284   -1.4551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1995   -1.3308   -1.0806 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6915   -0.3666   -0.3039 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8962   -0.1690    0.3328 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1286    0.9650    1.0963 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1477    1.9191    1.2292 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9326    1.7117    0.5824 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7010    0.5765   -0.1811 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6131    1.6393    0.3076 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9018    1.1325    0.6318 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7155    1.8383    1.2531 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4267   -0.2104   -2.0781 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9257   -1.1035   -1.7219 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8147    0.6420   -2.0646 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4698    1.2043    0.0516 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8961   -0.5066    1.4629 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4350   -1.0681   -0.1388 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6365    0.6675    0.3579 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7099   -1.7666    0.4386 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6300   -0.5687    1.7328 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0591   -0.3150   -0.8909 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3795   -1.8629    1.4391 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1926    1.1102    1.1163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5635    2.0122   -1.1425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7424    0.5665   -1.8938 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2957   -1.6255   -2.0772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7259   -2.1851   -1.3541 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6788   -0.9118    0.2349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0656    1.0983    1.5791 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2579    2.8262    1.8070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1422    2.4468    0.6708 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4876    2.6467    0.0989 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
  9 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21  5  1  0  0  0  0
 19 11  1  0  0  0  0
 19 14  1  0  0  0  0
  1 23  1  0  0  0  0
  1 24  1  0  0  0  0
  1 25  1  0  0  0  0
  2 26  1  6  0  0  0
  3 27  1  0  0  0  0
  3 28  1  0  0  0  0
  3 29  1  0  0  0  0
  4 30  1  0  0  0  0
  4 31  1  0  0  0  0
  5 32  1  6  0  0  0
  6 33  1  0  0  0  0
  9 34  1  1  0  0  0
 10 35  1  0  0  0  0
 10 36  1  0  0  0  0
 12 37  1  0  0  0  0
 13 38  1  0  0  0  0
 15 39  1  0  0  0  0
 16 40  1  0  0  0  0
 17 41  1  0  0  0  0
 18 42  1  0  0  0  0
 20 43  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0005713

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]N1C([H])=C(C2=C([H])C([H])=C([H])C([H])=C12)C([H])([H])[C@]1([H])N([H])C(=O)[C@]([H])(N([H])C1=O)C([H])([H])C([H])(C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C17H21N3O2/c1-10(2)7-14-16(21)20-15(17(22)19-14)8-11-9-18-13-6-4-3-5-12(11)13/h3-6,9-10,14-15,18H,7-8H2,1-2H3,(H,19,22)(H,20,21)/t14-,15+/m1/s1

> <INCHI_KEY>
BZUNCDPEEKFTCX-CABCVRRESA-N

> <FORMULA>
C17H21N3O2

> <MOLECULAR_WEIGHT>
299.374

> <EXACT_MASS>
299.163376928

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
43

> <JCHEM_AVERAGE_POLARIZABILITY>
33.08042217424227

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3S,6R)-3-[(1H-indol-3-yl)methyl]-6-(2-methylpropyl)piperazine-2,5-dione

> <ALOGPS_LOGP>
1.98

> <JCHEM_LOGP>
1.9361605223333322

> <ALOGPS_LOGS>
-3.34

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.359858896019954

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.247359488419566

> <JCHEM_PKA_STRONGEST_BASIC>
-3.776408541538761

> <JCHEM_POLAR_SURFACE_AREA>
73.99000000000001

> <JCHEM_REFRACTIVITY>
83.9739

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.36e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3S,6R)-3-(1H-indol-3-ylmethyl)-6-(2-methylpropyl)piperazine-2,5-dione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 43 45  0  0  0  0  0  0  0  0999 V2000
    4.4384   -0.1332   -1.5762 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5885    0.1221   -0.0890 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.9858   -0.2285    0.3879 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5420   -0.6812    0.6292 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1887   -0.2667    0.1841 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1323   -1.0515    0.8342 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1989   -0.6381    0.5862 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0939   -1.5425    0.6506 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5294    0.7642    0.2706 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2950    0.9321   -1.0168 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5715    0.1810   -0.9012 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9262   -1.0284   -1.4551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1995   -1.3308   -1.0806 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6915   -0.3666   -0.3039 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8962   -0.1690    0.3328 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1286    0.9650    1.0963 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1477    1.9191    1.2292 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9326    1.7117    0.5824 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7010    0.5765   -0.1811 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6131    1.6393    0.3076 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9018    1.1325    0.6318 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7155    1.8383    1.2531 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4267   -0.2104   -2.0781 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9257   -1.1035   -1.7219 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8147    0.6420   -2.0646 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4698    1.2043    0.0516 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8961   -0.5066    1.4629 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4350   -1.0681   -0.1388 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6365    0.6675    0.3579 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7099   -1.7666    0.4386 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6300   -0.5687    1.7328 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0591   -0.3150   -0.8909 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3795   -1.8629    1.4391 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1926    1.1102    1.1163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5635    2.0122   -1.1425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7424    0.5665   -1.8938 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2957   -1.6255   -2.0772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7259   -2.1851   -1.3541 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6788   -0.9118    0.2349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0656    1.0983    1.5791 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2579    2.8262    1.8070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1422    2.4468    0.6708 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4876    2.6467    0.0989 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
  9 20  1  0
 20 21  1  0
 21 22  2  0
 21  5  1  0
 19 11  1  0
 19 14  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  2 26  1  6
  3 27  1  0
  3 28  1  0
  3 29  1  0
  4 30  1  0
  4 31  1  0
  5 32  1  6
  6 33  1  0
  9 34  1  1
 10 35  1  0
 10 36  1  0
 12 37  1  0
 13 38  1  0
 15 39  1  0
 16 40  1  0
 17 41  1  0
 18 42  1  0
 20 43  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       4.438  -0.133  -1.576  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.588   0.122  -0.089  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.986  -0.229   0.388  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.542  -0.681   0.629  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.189  -0.267   0.184  0.00  0.00           C+0
HETATM    6  N   UNK     0       1.132  -1.052   0.834  0.00  0.00           N+0
HETATM    7  C   UNK     0      -0.199  -0.638   0.586  0.00  0.00           C+0
HETATM    8  O   UNK     0      -1.094  -1.543   0.651  0.00  0.00           O+0
HETATM    9  C   UNK     0      -0.529   0.764   0.271  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.295   0.932  -1.017  0.00  0.00           C+0
HETATM   11  C   UNK     0      -2.571   0.181  -0.901  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.926  -1.028  -1.455  0.00  0.00           C+0
HETATM   13  N   UNK     0      -4.199  -1.331  -1.081  0.00  0.00           N+0
HETATM   14  C   UNK     0      -4.691  -0.367  -0.304  0.00  0.00           C+0
HETATM   15  C   UNK     0      -5.896  -0.169   0.333  0.00  0.00           C+0
HETATM   16  C   UNK     0      -6.129   0.965   1.096  0.00  0.00           C+0
HETATM   17  C   UNK     0      -5.148   1.919   1.229  0.00  0.00           C+0
HETATM   18  C   UNK     0      -3.933   1.712   0.582  0.00  0.00           C+0
HETATM   19  C   UNK     0      -3.701   0.577  -0.181  0.00  0.00           C+0
HETATM   20  N   UNK     0       0.613   1.639   0.308  0.00  0.00           N+0
HETATM   21  C   UNK     0       1.902   1.133   0.632  0.00  0.00           C+0
HETATM   22  O   UNK     0       2.716   1.838   1.253  0.00  0.00           O+0
HETATM   23  H   UNK     0       5.427  -0.210  -2.078  0.00  0.00           H+0
HETATM   24  H   UNK     0       3.926  -1.103  -1.722  0.00  0.00           H+0
HETATM   25  H   UNK     0       3.815   0.642  -2.065  0.00  0.00           H+0
HETATM   26  H   UNK     0       4.470   1.204   0.052  0.00  0.00           H+0
HETATM   27  H   UNK     0       5.896  -0.507   1.463  0.00  0.00           H+0
HETATM   28  H   UNK     0       6.435  -1.068  -0.139  0.00  0.00           H+0
HETATM   29  H   UNK     0       6.636   0.668   0.358  0.00  0.00           H+0
HETATM   30  H   UNK     0       3.710  -1.767   0.439  0.00  0.00           H+0
HETATM   31  H   UNK     0       3.630  -0.569   1.733  0.00  0.00           H+0
HETATM   32  H   UNK     0       2.059  -0.315  -0.891  0.00  0.00           H+0
HETATM   33  H   UNK     0       1.379  -1.863   1.439  0.00  0.00           H+0
HETATM   34  H   UNK     0      -1.193   1.110   1.116  0.00  0.00           H+0
HETATM   35  H   UNK     0      -1.563   2.012  -1.143  0.00  0.00           H+0
HETATM   36  H   UNK     0      -0.742   0.567  -1.894  0.00  0.00           H+0
HETATM   37  H   UNK     0      -2.296  -1.626  -2.077  0.00  0.00           H+0
HETATM   38  H   UNK     0      -4.726  -2.185  -1.354  0.00  0.00           H+0
HETATM   39  H   UNK     0      -6.679  -0.912   0.235  0.00  0.00           H+0
HETATM   40  H   UNK     0      -7.066   1.098   1.579  0.00  0.00           H+0
HETATM   41  H   UNK     0      -5.258   2.826   1.807  0.00  0.00           H+0
HETATM   42  H   UNK     0      -3.142   2.447   0.671  0.00  0.00           H+0
HETATM   43  H   UNK     0       0.488   2.647   0.099  0.00  0.00           H+0
CONECT    1    2   23   24   25                                             
CONECT    2    1    3    4   26                                             
CONECT    3    2   27   28   29                                             
CONECT    4    2    5   30   31                                             
CONECT    5    4    6   21   32                                             
CONECT    6    5    7   33                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   20   34                                             
CONECT   10    9   11   35   36                                             
CONECT   11   10   12   19                                                  
CONECT   12   11   13   37                                                  
CONECT   13   12   14   38                                                  
CONECT   14   13   15   19                                                  
CONECT   15   14   16   39                                                  
CONECT   16   15   17   40                                                  
CONECT   17   16   18   41                                                  
CONECT   18   17   19   42                                                  
CONECT   19   18   11   14                                                  
CONECT   20    9   21   43                                                  
CONECT   21   20   22    5                                                  
CONECT   22   21                                                            
CONECT   23    1                                                            
CONECT   24    1                                                            
CONECT   25    1                                                            
CONECT   26    2                                                            
CONECT   27    3                                                            
CONECT   28    3                                                            
CONECT   29    3                                                            
CONECT   30    4                                                            
CONECT   31    4                                                            
CONECT   32    5                                                            
CONECT   33    6                                                            
CONECT   34    9                                                            
CONECT   35   10                                                            
CONECT   36   10                                                            
CONECT   37   12                                                            
CONECT   38   13                                                            
CONECT   39   15                                                            
CONECT   40   16                                                            
CONECT   41   17                                                            
CONECT   42   18                                                            
CONECT   43   20                                                            
MASTER        0    0    0    0    0    0    0    0   43    0   90    0
END

RDKit          3D

43 45  0  0  0  0  0  0  0  0999 V2000
    4.4384   -0.1332   -1.5762 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5885    0.1221   -0.0890 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.9858   -0.2285    0.3879 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5420   -0.6812    0.6292 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1887   -0.2667    0.1841 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1323   -1.0515    0.8342 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1989   -0.6381    0.5862 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0939   -1.5425    0.6506 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5294    0.7642    0.2706 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2950    0.9321   -1.0168 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5715    0.1810   -0.9012 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9262   -1.0284   -1.4551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1995   -1.3308   -1.0806 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6915   -0.3666   -0.3039 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8962   -0.1690    0.3328 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1286    0.9650    1.0963 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1477    1.9191    1.2292 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9326    1.7117    0.5824 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7010    0.5765   -0.1811 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6131    1.6393    0.3076 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9018    1.1325    0.6318 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7155    1.8383    1.2531 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4267   -0.2104   -2.0781 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9257   -1.1035   -1.7219 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8147    0.6420   -2.0646 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4698    1.2043    0.0516 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8961   -0.5066    1.4629 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4350   -1.0681   -0.1388 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6365    0.6675    0.3579 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7099   -1.7666    0.4386 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6300   -0.5687    1.7328 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0591   -0.3150   -0.8909 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3795   -1.8629    1.4391 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1926    1.1102    1.1163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5635    2.0122   -1.1425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7424    0.5665   -1.8938 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2957   -1.6255   -2.0772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7259   -2.1851   -1.3541 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6788   -0.9118    0.2349 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0656    1.0983    1.5791 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2579    2.8262    1.8070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1422    2.4468    0.6708 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4876    2.6467    0.0989 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
  9 20  1  0
 20 21  1  0
 21 22  2  0
 21  5  1  0
 19 11  1  0
 19 14  1  0
  1 23  1  0
  1 24  1  0
  1 25  1  0
  2 26  1  6
  3 27  1  0
  3 28  1  0
  3 29  1  0
  4 30  1  0
  4 31  1  0
  5 32  1  6
  6 33  1  0
  9 34  1  1
 10 35  1  0
 10 36  1  0
 12 37  1  0
 13 38  1  0
 15 39  1  0
 16 40  1  0
 17 41  1  0
 18 42  1  0
 20 43  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₁₇H₂₁N₃O₂

Average Mass

299.3740 Da

Monoisotopic Mass

299.16338 Da

IUPAC Name

(3S,6R)-3-[(1H-indol-3-yl)methyl]-6-(2-methylpropyl)piperazine-2,5-dione

Traditional Name

(3S,6R)-3-(1H-indol-3-ylmethyl)-6-(2-methylpropyl)piperazine-2,5-dione

CAS Registry Number

Not Available

SMILES

CC(C)C[C@H]1NC(=O)[C@H](CC2=CNC3=CC=CC=C23)NC1=O

InChI Identifier

InChI=1S/C17H21N3O2/c1-10(2)7-14-16(21)20-15(17(22)19-14)8-11-9-18-13-6-4-3-5-12(11)13/h3-6,9-10,14-15,18H,7-8H2,1-2H3,(H,19,22)(H,20,21)/t14-,15+/m1/s1

InChI Key

BZUNCDPEEKFTCX-CABCVRRESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Penicillium	NPAtlas	15730251
Penicillium brevicompactum	Fungi	KNApSAcK

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as alpha amino acids and derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon), or a derivative thereof.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Alpha amino acids and derivatives

Alternative Parents

Substituents

Alpha-amino acid or derivatives
3-alkylindole
Indole
Indole or derivatives
Dioxopiperazine
2,5-dioxopiperazine
1,4-diazinane
Piperazine
Substituted pyrrole
Benzenoid
Heteroaromatic compound
Pyrrole
Lactam
Carboxamide group
Secondary carboxylic acid amide
Azacycle
Organoheterocyclic compound
Organooxygen compound
Organonitrogen compound
Organic nitrogen compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Carbonyl group
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.98	ALOGPS
logP	1.94	ChemAxon
logS	-3.3	ALOGPS
pKa (Strongest Acidic)	11.25	ChemAxon
pKa (Strongest Basic)	-3.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	73.99 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	83.97 m³·mol⁻¹	ChemAxon
Polarizability	33.08 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA007246

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9360730

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11185646

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Kimura Y, Sawada A, Kuramata M, Kusano M, Fujioka S, Kawano T, Shimada A: Brevicompanine C, cyclo-(D-Ile-L-Trp), and cyclo-(D-Leu-L-Trp), plant growth regulators from Penicillium brevi-compactum. J Nat Prod. 2005 Feb;68(2):237-9. doi: 10.1021/np040178p. [PubMed:15730251 ]

Showing NP-Card for Cyclo-(D-Leu-L-Trp) (NP0005713)

MOL for NP0005713 (Cyclo-(D-Leu-L-Trp))

3D MOL for NP0005713 (Cyclo-(D-Leu-L-Trp))

3D SDF for NP0005713 (Cyclo-(D-Leu-L-Trp))

3D-SDF for NP0005713 (Cyclo-(D-Leu-L-Trp))

PDB for NP0005713 (Cyclo-(D-Leu-L-Trp))

3D PDB for NP0005713 (Cyclo-(D-Leu-L-Trp))

SMILES for NP0005713 (Cyclo-(D-Leu-L-Trp))

INCHI for NP0005713 (Cyclo-(D-Leu-L-Trp))

Structure for NP0005713 (Cyclo-(D-Leu-L-Trp))

3D Structure for NP0005713 (Cyclo-(D-Leu-L-Trp))