Np mrd loader

Record Information
Version2.0
Created at2020-12-09 02:50:34 UTC
Updated at2021-07-15 16:52:35 UTC
NP-MRD IDNP0005645
Secondary Accession NumbersNone
Natural Product Identification
Common NameA-503083 A
Provided ByNPAtlasNPAtlas Logo
Description A-503083 A is found in Streptomyces sp. SANK 62799. A-503083 A was first documented in 2004 (PMID: 15638324). Based on a literature review very few articles have been published on 3,4-dihydroxy-N-(7-hydroxy-2-methyl-3,4,5,6-tetrahydro-2H-azepin-6-yl)-2-{[5-(4-hydroxy-2-oxo-1,2-dihydropyrimidin-1-yl)-4-(C-hydroxycarbonimidoyloxy)-3-methoxyoxolan-2-yl](C-hydroxycarbonimidoyl)methoxy}-3,4-dihydro-2H-pyran-6-carboximidic acid.
Structure
Thumb
Synonyms
ValueSource
3,4-Dihydroxy-N-(7-hydroxy-2-methyl-3,4,5,6-tetrahydro-2H-azepin-6-yl)-2-{[5-(4-hydroxy-2-oxo-1,2-dihydropyrimidin-1-yl)-4-(C-hydroxycarbonimidoyloxy)-3-methoxyoxolan-2-yl](C-hydroxycarbonimidoyl)methoxy}-3,4-dihydro-2H-pyran-6-carboximidateGenerator
Chemical FormulaC25H34N6O13
Average Mass626.5760 Da
Monoisotopic Mass626.21839 Da
IUPAC Name(2S,3S,4S,5S)-5-[(R)-carbamoyl({[(2S,3R,4S)-3,4-dihydroxy-6-{[(3R,7R)-7-methyl-2-oxoazepan-3-yl]carbamoyl}-3,4-dihydro-2H-pyran-2-yl]oxy})methyl]-2-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)-4-methoxyoxolan-3-yl carbamate
Traditional Name(2S,3S,4S,5S)-5-[(R)-carbamoyl({[(2S,3R,4S)-3,4-dihydroxy-6-{[(3R,7R)-7-methyl-2-oxoazepan-3-yl]carbamoyl}-3,4-dihydro-2H-pyran-2-yl]oxy})methyl]-2-(2,4-dioxo-3H-pyrimidin-1-yl)-4-methoxyoxolan-3-yl carbamate
CAS Registry NumberNot Available
SMILES
COC1C(OC(N)=O)C(OC1C(OC1OC(=CC(O)C1O)C(=O)NC1CCCC(C)NC1=O)C(N)=O)N1C=CC(=O)NC1=O
InChI Identifier
InChI=1S/C25H34N6O13/c1-9-4-3-5-10(20(36)28-9)29-21(37)12-8-11(32)14(34)23(41-12)43-17(19(26)35)16-15(40-2)18(44-24(27)38)22(42-16)31-7-6-13(33)30-25(31)39/h6-11,14-18,22-23,32,34H,3-5H2,1-2H3,(H2,26,35)(H2,27,38)(H,28,36)(H,29,37)(H,30,33,39)
InChI KeyDSKGVLLYPPLLJF-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces sp. SANK 62799NPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.56ALOGPS
logP-3.7ChemAxon
logS-2.4ALOGPS
pKa (Strongest Acidic)9.7ChemAxon
pKa (Strongest Basic)-3.4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count12ChemAxon
Hydrogen Donor Count7ChemAxon
Polar Surface Area280.4 ŲChemAxon
Rotatable Bond Count10ChemAxon
Refractivity141.27 m³·mol⁻¹ChemAxon
Polarizability59.46 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA005142
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID8006346
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound9830612
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Muramatsu Y, Ohnuki T, Ishii MM, Kizuka M, Enokita R, Miyakoshi S, Takatsu T, Inukai M: A-503083 A, B, E and F, novel inhibitors of bacterial translocase I, produced by Streptomyces sp. SANK 62799. J Antibiot (Tokyo). 2004 Oct;57(10):639-46. doi: 10.7164/antibiotics.57.639. [PubMed:15638324 ]