NP-MRD: Showing NP-Card for Dichomitin B (NP0005635)

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Record Information

Version

2.0

Created at

2020-12-09 02:50:09 UTC

Updated at

2021-07-15 16:52:34 UTC

NP-MRD ID

NP0005635

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Dichomitin B

Provided By

NPAtlas

Description

Dichomitin B is found in Dichomitus squalens. Dichomitin B was first documented in 2004 (PMID: 15620268). Based on a literature review very few articles have been published on Dichomitin B (PMID: 26728016).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118213D          

 44 46  0  0  0  0            999 V2000
   -1.4806    1.8992    1.5511 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0592    2.0189    0.1297 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.2469    1.9296   -0.7571 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.4375    0.4254   -0.8610 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.9922    0.1650   -2.0885 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0428   -0.1634   -0.6844 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1073    0.8741   -0.2900 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9613    0.6763    0.6586 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5372   -0.5023    1.1163 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1793   -1.8699    0.7944 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1279   -2.1895   -0.1705 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -2.3211   -2.2135   -0.0939 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1106   -1.0799    1.5504 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3220    0.2926    0.0572 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4045   -0.3114   -1.2960 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5534    1.0605    0.4840 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6359    0.5436   -0.1782 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7658    2.9366    1.8988 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4466    1.3217    1.6414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7194    1.5507    2.2481 H   0  0  0  0  0  0  0  0  0  0  0  0
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    2.6401   -1.4160   -1.2328 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2996    0.0898   -1.8629 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5611   -0.1475   -1.9615 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.6482    1.0324    1.5875 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8399    1.0778   -0.9617 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  1  0  0  0  0
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  9 10  1  0  0  0  0
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  7  2  1  0  0  0  0
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 17 43  1  0  0  0  0
 18 44  1  0  0  0  0
M  END

     RDKit          3D

 44 46  0  0  0  0  0  0  0  0999 V2000
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   -1.0592    2.0189    0.1297 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.2469    1.9296   -0.7571 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4375    0.4254   -0.8610 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.9922    0.1650   -2.0885 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0428   -0.1634   -0.6844 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1073    0.8741   -0.2900 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9613    0.6763    0.6586 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5372   -0.5023    1.1163 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1793   -1.8699    0.7944 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1279   -2.1895   -0.1705 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1170   -1.3762    0.2071 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3211   -2.2135   -0.0939 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1106   -1.0799    1.5504 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3220    0.2926    0.0572 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4045   -0.3114   -1.2960 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5534    1.0605    0.4840 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6359    0.5436   -0.1782 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7658    2.9366    1.8988 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4466    1.3217    1.6414 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.1019    2.4251   -0.2577 H   0  0  0  0  0  0  0  0  0  0  0  0
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    2.0992   -0.4600    2.1098 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1205   -2.4127    0.4649 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9175   -2.4412    1.7439 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1524   -3.2784   -0.0425 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3366   -2.0719   -1.2305 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0340   -3.2364   -0.4737 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9213   -2.4348    0.8341 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0174   -1.7924   -0.8148 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0
  2  3  1  0
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  4  5  1  0
  4  6  1  0
  6  7  1  0
  7  8  1  0
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  9 10  1  0
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 12 13  1  0
 12 14  1  1
  9 15  1  0
 15 16  1  6
 15 17  1  0
 17 18  1  0
  7  2  1  0
 15  8  1  0
 12  6  1  0
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M  END


  Mrv1652306242118213D          

 44 46  0  0  0  0            999 V2000
   -1.4806    1.8992    1.5511 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0592    2.0189    0.1297 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.2469    1.9296   -0.7571 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.4375    0.4254   -0.8610 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.9922    0.1650   -2.0885 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0428   -0.1634   -0.6844 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1073    0.8741   -0.2900 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9613    0.6763    0.6586 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5372   -0.5023    1.1163 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1793   -1.8699    0.7944 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1279   -2.1895   -0.1705 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1170   -1.3762    0.2071 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -1.1106   -1.0799    1.5504 O   0  0  0  0  0  0  0  0  0  0  0  0
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    3.5534    1.0605    0.4840 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6359    0.5436   -0.1782 O   0  0  0  0  0  0  0  0  0  0  0  0
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    0.9175   -2.4412    1.7439 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.5611   -0.1475   -1.9615 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4062    2.1125    0.1654 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6482    1.0324    1.5875 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8399    1.0778   -0.9617 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
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 12 14  1  1  0  0  0
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 15  8  1  0  0  0  0
 12  6  1  0  0  0  0
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  5 26  1  0  0  0  0
  6 27  1  6  0  0  0
  7 28  1  6  0  0  0
  8 29  1  1  0  0  0
  9 30  1  1  0  0  0
 10 31  1  0  0  0  0
 10 32  1  0  0  0  0
 11 33  1  0  0  0  0
 11 34  1  0  0  0  0
 13 35  1  0  0  0  0
 13 36  1  0  0  0  0
 13 37  1  0  0  0  0
 14 38  1  0  0  0  0
 16 39  1  0  0  0  0
 16 40  1  0  0  0  0
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 17 42  1  0  0  0  0
 17 43  1  0  0  0  0
 18 44  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0005635

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC([H])([H])[C@@]1(C([H])([H])[H])[C@]2([H])C([H])([H])C([H])([H])[C@](O[H])(C([H])([H])[H])[C@@]3([H])[C@]([H])(O[H])C([H])([H])[C@@]([H])(C([H])([H])[H])[C@@]3([H])[C@]12[H]

> <INCHI_IDENTIFIER>
InChI=1S/C15H26O3/c1-8-6-10(17)13-11(8)12-9(14(12,2)7-16)4-5-15(13,3)18/h8-13,16-18H,4-7H2,1-3H3/t8-,9-,10-,11+,12-,13+,14+,15-/m1/s1

> <INCHI_KEY>
DDVAVJSIHXELQF-WHNZPNJCSA-N

> <FORMULA>
C15H26O3

> <MOLECULAR_WEIGHT>
254.37

> <EXACT_MASS>
254.188194697

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
44

> <JCHEM_AVERAGE_POLARIZABILITY>
28.566664469894523

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,1aS,1bS,2R,4R,4aR,5R,7aR)-1-(hydroxymethyl)-1,2,5-trimethyl-decahydro-1H-cyclopropa[e]azulene-4,5-diol

> <ALOGPS_LOGP>
1.23

> <JCHEM_LOGP>
0.552569462333334

> <ALOGPS_LOGS>
-2.32

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.175552530535462

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.46398284363394

> <JCHEM_PKA_STRONGEST_BASIC>
-1.4658210920257169

> <JCHEM_POLAR_SURFACE_AREA>
60.69

> <JCHEM_REFRACTIVITY>
69.94539999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.21e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,1aS,1bS,2R,4R,4aR,5R,7aR)-1-(hydroxymethyl)-1,2,5-trimethyl-octahydro-1aH-cyclopropa[e]azulene-4,5-diol

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 44 46  0  0  0  0  0  0  0  0999 V2000
   -1.4806    1.8992    1.5511 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0592    2.0189    0.1297 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.2469    1.9296   -0.7571 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4375    0.4254   -0.8610 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.9922    0.1650   -2.0885 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0428   -0.1634   -0.6844 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1073    0.8741   -0.2900 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9613    0.6763    0.6586 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5372   -0.5023    1.1163 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1793   -1.8699    0.7944 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1279   -2.1895   -0.1705 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1170   -1.3762    0.2071 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3211   -2.2135   -0.0939 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1106   -1.0799    1.5504 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3220    0.2926    0.0572 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4045   -0.3114   -1.2960 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5534    1.0605    0.4840 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6359    0.5436   -0.1782 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7658    2.9366    1.8988 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4466    1.3217    1.6414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7194    1.5507    2.2481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5316    2.9864    0.0049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1019    2.4251   -0.2577 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0981    2.3994   -1.7467 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0977    0.1448   -0.0035 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1105    0.9608   -2.6676 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7816   -0.5655   -1.7102 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3520    1.3159   -1.2322 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0931    1.6026    1.3150 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0992   -0.4600    2.1098 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1205   -2.4127    0.4649 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9175   -2.4412    1.7439 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1524   -3.2784   -0.0425 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3366   -2.0719   -1.2305 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0340   -3.2364   -0.4737 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9213   -2.4348    0.8341 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0174   -1.7924   -0.8148 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3422   -1.8785    2.0555 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6401   -1.4160   -1.2328 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2996    0.0898   -1.8629 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5611   -0.1475   -1.9615 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4062    2.1125    0.1654 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6482    1.0324    1.5875 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8399    1.0778   -0.9617 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  4  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  1
  9 15  1  0
 15 16  1  6
 15 17  1  0
 17 18  1  0
  7  2  1  0
 15  8  1  0
 12  6  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  2 22  1  1
  3 23  1  0
  3 24  1  0
  4 25  1  1
  5 26  1  0
  6 27  1  6
  7 28  1  6
  8 29  1  1
  9 30  1  1
 10 31  1  0
 10 32  1  0
 11 33  1  0
 11 34  1  0
 13 35  1  0
 13 36  1  0
 13 37  1  0
 14 38  1  0
 16 39  1  0
 16 40  1  0
 16 41  1  0
 17 42  1  0
 17 43  1  0
 18 44  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -1.481   1.899   1.551  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.059   2.019   0.130  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.247   1.930  -0.757  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.438   0.425  -0.861  0.00  0.00           C+0
HETATM    5  O   UNK     0      -2.992   0.165  -2.088  0.00  0.00           O+0
HETATM    6  C   UNK     0      -1.043  -0.163  -0.684  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.107   0.874  -0.290  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.961   0.676   0.659  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.537  -0.502   1.116  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.179  -1.870   0.794  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.128  -2.189  -0.171  0.00  0.00           C+0
HETATM   12  C   UNK     0      -1.117  -1.376   0.207  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.321  -2.213  -0.094  0.00  0.00           C+0
HETATM   14  O   UNK     0      -1.111  -1.080   1.550  0.00  0.00           O+0
HETATM   15  C   UNK     0       2.322   0.293   0.057  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.405  -0.311  -1.296  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.553   1.061   0.484  0.00  0.00           C+0
HETATM   18  O   UNK     0       4.636   0.544  -0.178  0.00  0.00           O+0
HETATM   19  H   UNK     0      -1.766   2.937   1.899  0.00  0.00           H+0
HETATM   20  H   UNK     0      -2.447   1.322   1.641  0.00  0.00           H+0
HETATM   21  H   UNK     0      -0.719   1.551   2.248  0.00  0.00           H+0
HETATM   22  H   UNK     0      -0.532   2.986   0.005  0.00  0.00           H+0
HETATM   23  H   UNK     0      -3.102   2.425  -0.258  0.00  0.00           H+0
HETATM   24  H   UNK     0      -2.098   2.399  -1.747  0.00  0.00           H+0
HETATM   25  H   UNK     0      -3.098   0.145  -0.004  0.00  0.00           H+0
HETATM   26  H   UNK     0      -3.111   0.961  -2.668  0.00  0.00           H+0
HETATM   27  H   UNK     0      -0.782  -0.566  -1.710  0.00  0.00           H+0
HETATM   28  H   UNK     0       0.352   1.316  -1.232  0.00  0.00           H+0
HETATM   29  H   UNK     0       1.093   1.603   1.315  0.00  0.00           H+0
HETATM   30  H   UNK     0       2.099  -0.460   2.110  0.00  0.00           H+0
HETATM   31  H   UNK     0       2.120  -2.413   0.465  0.00  0.00           H+0
HETATM   32  H   UNK     0       0.918  -2.441   1.744  0.00  0.00           H+0
HETATM   33  H   UNK     0      -0.152  -3.278  -0.043  0.00  0.00           H+0
HETATM   34  H   UNK     0       0.337  -2.072  -1.230  0.00  0.00           H+0
HETATM   35  H   UNK     0      -2.034  -3.236  -0.474  0.00  0.00           H+0
HETATM   36  H   UNK     0      -2.921  -2.435   0.834  0.00  0.00           H+0
HETATM   37  H   UNK     0      -3.017  -1.792  -0.815  0.00  0.00           H+0
HETATM   38  H   UNK     0      -1.342  -1.879   2.055  0.00  0.00           H+0
HETATM   39  H   UNK     0       2.640  -1.416  -1.233  0.00  0.00           H+0
HETATM   40  H   UNK     0       3.300   0.090  -1.863  0.00  0.00           H+0
HETATM   41  H   UNK     0       1.561  -0.148  -1.962  0.00  0.00           H+0
HETATM   42  H   UNK     0       3.406   2.112   0.165  0.00  0.00           H+0
HETATM   43  H   UNK     0       3.648   1.032   1.587  0.00  0.00           H+0
HETATM   44  H   UNK     0       4.840   1.078  -0.962  0.00  0.00           H+0
CONECT    1    2   19   20   21                                             
CONECT    2    1    3    7   22                                             
CONECT    3    2    4   23   24                                             
CONECT    4    3    5    6   25                                             
CONECT    5    4   26                                                       
CONECT    6    4    7   12   27                                             
CONECT    7    6    8    2   28                                             
CONECT    8    7    9   15   29                                             
CONECT    9    8   10   15   30                                             
CONECT   10    9   11   31   32                                             
CONECT   11   10   12   33   34                                             
CONECT   12   11   13   14    6                                             
CONECT   13   12   35   36   37                                             
CONECT   14   12   38                                                       
CONECT   15    9   16   17    8                                             
CONECT   16   15   39   40   41                                             
CONECT   17   15   18   42   43                                             
CONECT   18   17   44                                                       
CONECT   19    1                                                            
CONECT   20    1                                                            
CONECT   21    1                                                            
CONECT   22    2                                                            
CONECT   23    3                                                            
CONECT   24    3                                                            
CONECT   25    4                                                            
CONECT   26    5                                                            
CONECT   27    6                                                            
CONECT   28    7                                                            
CONECT   29    8                                                            
CONECT   30    9                                                            
CONECT   31   10                                                            
CONECT   32   10                                                            
CONECT   33   11                                                            
CONECT   34   11                                                            
CONECT   35   13                                                            
CONECT   36   13                                                            
CONECT   37   13                                                            
CONECT   38   14                                                            
CONECT   39   16                                                            
CONECT   40   16                                                            
CONECT   41   16                                                            
CONECT   42   17                                                            
CONECT   43   17                                                            
CONECT   44   18                                                            
MASTER        0    0    0    0    0    0    0    0   44    0   92    0
END

RDKit          3D

44 46  0  0  0  0  0  0  0  0999 V2000
   -1.4806    1.8992    1.5511 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0592    2.0189    0.1297 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.2469    1.9296   -0.7571 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4375    0.4254   -0.8610 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.9922    0.1650   -2.0885 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0428   -0.1634   -0.6844 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1073    0.8741   -0.2900 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9613    0.6763    0.6586 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5372   -0.5023    1.1163 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1793   -1.8699    0.7944 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1279   -2.1895   -0.1705 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1170   -1.3762    0.2071 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3211   -2.2135   -0.0939 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1106   -1.0799    1.5504 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3220    0.2926    0.0572 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4045   -0.3114   -1.2960 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5534    1.0605    0.4840 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6359    0.5436   -0.1782 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7658    2.9366    1.8988 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4466    1.3217    1.6414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7194    1.5507    2.2481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5316    2.9864    0.0049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1019    2.4251   -0.2577 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0981    2.3994   -1.7467 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0977    0.1448   -0.0035 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1105    0.9608   -2.6676 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7816   -0.5655   -1.7102 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3520    1.3159   -1.2322 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0931    1.6026    1.3150 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0992   -0.4600    2.1098 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1205   -2.4127    0.4649 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9175   -2.4412    1.7439 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1524   -3.2784   -0.0425 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3366   -2.0719   -1.2305 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0340   -3.2364   -0.4737 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9213   -2.4348    0.8341 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0174   -1.7924   -0.8148 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3422   -1.8785    2.0555 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6401   -1.4160   -1.2328 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2996    0.0898   -1.8629 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5611   -0.1475   -1.9615 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4062    2.1125    0.1654 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6482    1.0324    1.5875 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8399    1.0778   -0.9617 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  4  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  1
  9 15  1  0
 15 16  1  6
 15 17  1  0
 17 18  1  0
  7  2  1  0
 15  8  1  0
 12  6  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  2 22  1  1
  3 23  1  0
  3 24  1  0
  4 25  1  1
  5 26  1  0
  6 27  1  6
  7 28  1  6
  8 29  1  1
  9 30  1  1
 10 31  1  0
 10 32  1  0
 11 33  1  0
 11 34  1  0
 13 35  1  0
 13 36  1  0
 13 37  1  0
 14 38  1  0
 16 39  1  0
 16 40  1  0
 16 41  1  0
 17 42  1  0
 17 43  1  0
 18 44  1  0
M  END

View in JSmol View NMR Assignments View DFT Assignments 3D Conformers

Synonyms

Value	Source
2beta,13-Dihydroxyledol	MeSH

Chemical Formula

C₁₅H₂₆O₃

Average Mass

254.3700 Da

Monoisotopic Mass

254.18819 Da

IUPAC Name

(1S,1aS,1bS,2R,4R,4aR,5R,7aR)-1-(hydroxymethyl)-1,2,5-trimethyl-decahydro-1H-cyclopropa[e]azulene-4,5-diol

Traditional Name

(1S,1aS,1bS,2R,4R,4aR,5R,7aR)-1-(hydroxymethyl)-1,2,5-trimethyl-octahydro-1aH-cyclopropa[e]azulene-4,5-diol

CAS Registry Number

Not Available

SMILES

C[C@@H]1C[C@@H](O)[C@H]2[C@@H]1[C@H]1[C@@H](CC[C@@]2(C)O)[C@]1(C)CO

InChI Identifier

InChI=1S/C15H26O3/c1-8-6-10(17)13-11(8)12-9(14(12,2)7-16)4-5-15(13,3)18/h8-13,16-18H,4-7H2,1-3H3/t8-,9-,10-,11+,12-,13+,14+,15-/m1/s1

InChI Key

DDVAVJSIHXELQF-WHNZPNJCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 150 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 175 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 225 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 250 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, chcl3, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Dichomitus squalens	NPAtlas	15620268

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.23	ALOGPS
logP	0.55	ChemAxon
logS	-2.3	ALOGPS
pKa (Strongest Acidic)	14.46	ChemAxon
pKa (Strongest Basic)	-1.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	60.69 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	69.95 m³·mol⁻¹	ChemAxon
Polarizability	28.57 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA014546

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9463265

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11288278

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Huang Z, Dan Y, Huang Y, Lin L, Li T, Ye W, Wei X: Sesquiterpenes from the mycelial cultures of Dichomitus squalens. J Nat Prod. 2004 Dec;67(12):2121-3. doi: 10.1021/np0497144. [PubMed:15620268 ]
Degenkolb T, Vilcinskas A: Metabolites from nematophagous fungi and nematicidal natural products from fungi as alternatives for biological control. Part II: metabolites from nematophagous basidiomycetes and non-nematophagous fungi. Appl Microbiol Biotechnol. 2016 May;100(9):3813-24. doi: 10.1007/s00253-015-7234-5. Epub 2016 Jan 4. [PubMed:26728016 ]

Showing NP-Card for Dichomitin B (NP0005635)

MOL for NP0005635 (Dichomitin B)

3D MOL for NP0005635 (Dichomitin B)

3D SDF for NP0005635 (Dichomitin B)

3D-SDF for NP0005635 (Dichomitin B)

PDB for NP0005635 (Dichomitin B)

3D PDB for NP0005635 (Dichomitin B)

SMILES for NP0005635 (Dichomitin B)

INCHI for NP0005635 (Dichomitin B)

Structure for NP0005635 (Dichomitin B)

3D Structure for NP0005635 (Dichomitin B)