NP-MRD: Showing NP-Card for Phomol (NP0005602)

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Record Information

Version

2.0

Created at

2020-12-09 02:48:43 UTC

Updated at

2021-07-15 16:52:28 UTC

NP-MRD ID

NP0005602

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Phomol

Provided By

NPAtlas

Description

Phomol belongs to the class of organic compounds known as oxocins. Oxocins are compounds containing an oxocin ring, which is a eight-member unsaturated aromatic ring containing one oxygen atom and seven carbon atoms. Phomol is found in Phomopsis. Phomol was first documented in 2004 (PMID: 15580955). Based on a literature review very few articles have been published on Phomol.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118213D          

 30 32  0  0  0  0            999 V2000
    2.2984   -0.8305   -2.2569 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6639   -0.9128   -1.1865 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0127   -2.1580   -0.8232 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0996   -2.0267    0.1716 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6139   -0.6276    0.3347 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5812   -0.2096   -0.7305 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8207    0.2894    0.0228 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.9778    0.0302   -0.6694 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7085   -0.5168    1.2788 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6216   -1.0338    1.9688 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3554   -0.5866    1.5454 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4458    0.3973    0.4341 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2960    1.4689    1.2622 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2907    2.4090    1.3415 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4242    2.2753    0.5978 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5839    1.1757   -0.2551 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7335    1.0788   -0.9798 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5945    0.2497   -0.3284 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6247   -2.6446   -1.7481 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8096   -2.8605   -0.4386 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2784   -2.3730    1.1561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9463   -2.6770   -0.1015 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8554   -1.0063   -1.4318 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2114    0.6768   -1.3011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7039    1.3520    0.3167 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2704    0.8680   -1.1071 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6224    1.5581    1.8519 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1399    3.2466    2.0080 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1985    3.0214    0.6695 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9936    0.3664   -1.6018 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
  5 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  2  0  0  0  0
 18  2  1  0  0  0  0
  5 11  1  1  0  0  0
 18 12  1  0  0  0  0
  3 19  1  0  0  0  0
  3 20  1  0  0  0  0
  4 21  1  0  0  0  0
  4 22  1  0  0  0  0
  6 23  1  0  0  0  0
  6 24  1  0  0  0  0
  7 25  1  1  0  0  0
  8 26  1  0  0  0  0
 13 27  1  0  0  0  0
 14 28  1  0  0  0  0
 15 29  1  0  0  0  0
 17 30  1  0  0  0  0
M  END

     RDKit          3D

 30 32  0  0  0  0  0  0  0  0999 V2000
    2.2984   -0.8305   -2.2569 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6639   -0.9128   -1.1865 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0127   -2.1580   -0.8232 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0996   -2.0267    0.1716 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6139   -0.6276    0.3347 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5812   -0.2096   -0.7305 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8207    0.2894    0.0228 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.9778    0.0302   -0.6694 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7085   -0.5168    1.2788 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6216   -1.0338    1.9688 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3554   -0.5866    1.5454 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4458    0.3973    0.4341 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2960    1.4689    1.2622 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2907    2.4090    1.3415 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4242    2.2753    0.5978 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5839    1.1757   -0.2551 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7335    1.0788   -0.9798 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5945    0.2497   -0.3284 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6247   -2.6446   -1.7481 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8096   -2.8605   -0.4386 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2784   -2.3730    1.1561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9463   -2.6770   -0.1015 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8554   -1.0063   -1.4318 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2114    0.6768   -1.3011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7039    1.3520    0.3167 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2704    0.8680   -1.1071 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6224    1.5581    1.8519 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1399    3.2466    2.0080 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1985    3.0214    0.6695 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9936    0.3664   -1.6018 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  2  0
  9 11  1  0
  5 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  1  0
 16 18  2  0
 18  2  1  0
  5 11  1  1
 18 12  1  0
  3 19  1  0
  3 20  1  0
  4 21  1  0
  4 22  1  0
  6 23  1  0
  6 24  1  0
  7 25  1  1
  8 26  1  0
 13 27  1  0
 14 28  1  0
 15 29  1  0
 17 30  1  0
M  END


  Mrv1652306242118213D          

 30 32  0  0  0  0            999 V2000
    2.2984   -0.8305   -2.2569 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6639   -0.9128   -1.1865 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0127   -2.1580   -0.8232 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0996   -2.0267    0.1716 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6139   -0.6276    0.3347 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5812   -0.2096   -0.7305 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8207    0.2894    0.0228 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.9778    0.0302   -0.6694 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7085   -0.5168    1.2788 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6216   -1.0338    1.9688 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3554   -0.5866    1.5454 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4458    0.3973    0.4341 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2960    1.4689    1.2622 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2907    2.4090    1.3415 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4242    2.2753    0.5978 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5839    1.1757   -0.2551 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7335    1.0788   -0.9798 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5945    0.2497   -0.3284 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6247   -2.6446   -1.7481 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8096   -2.8605   -0.4386 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2784   -2.3730    1.1561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9463   -2.6770   -0.1015 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8554   -1.0063   -1.4318 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2114    0.6768   -1.3011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7039    1.3520    0.3167 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2704    0.8680   -1.1071 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6224    1.5581    1.8519 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1399    3.2466    2.0080 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1985    3.0214    0.6695 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9936    0.3664   -1.6018 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
  5 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  2  0  0  0  0
 18  2  1  0  0  0  0
  5 11  1  1  0  0  0
 18 12  1  0  0  0  0
  3 19  1  0  0  0  0
  3 20  1  0  0  0  0
  4 21  1  0  0  0  0
  4 22  1  0  0  0  0
  6 23  1  0  0  0  0
  6 24  1  0  0  0  0
  7 25  1  1  0  0  0
  8 26  1  0  0  0  0
 13 27  1  0  0  0  0
 14 28  1  0  0  0  0
 15 29  1  0  0  0  0
 17 30  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0005602

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C2C(=O)C([H])([H])C([H])([H])[C@@]3(OC(=O)[C@]([H])(O[H])C3([H])[H])C2=C([H])C([H])=C1[H]

> <INCHI_IDENTIFIER>
InChI=1S/C13H12O5/c14-8-3-1-2-7-11(8)9(15)4-5-13(7)6-10(16)12(17)18-13/h1-3,10,14,16H,4-6H2/t10-,13+/m1/s1

> <INCHI_KEY>
IRLIXJLJAAXRFK-WTPCJXRQSA-N

> <FORMULA>
C22H36O7

> <MOLECULAR_WEIGHT>
412.523

> <EXACT_MASS>
412.246103499

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
30

> <JCHEM_AVERAGE_POLARIZABILITY>
23.78725905519493

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,4'R)-4',5-dihydroxy-3,4-dihydro-2H-spiro[naphthalene-1,2'-oxolane]-4,5'-dione

> <ALOGPS_LOGP>
1.14

> <JCHEM_LOGP>
1.0447854409999997

> <ALOGPS_LOGS>
-1.58

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.593686790240191

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.585446499901956

> <JCHEM_PKA_STRONGEST_BASIC>
-3.8503496267351016

> <JCHEM_POLAR_SURFACE_AREA>
83.83

> <JCHEM_REFRACTIVITY>
61.208100000000016

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.52e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,4'R)-4',5-dihydroxy-2,3-dihydrospiro[naphthalene-1,2'-oxolane]-4,5'-dione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 30 32  0  0  0  0  0  0  0  0999 V2000
    2.2984   -0.8305   -2.2569 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6639   -0.9128   -1.1865 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0127   -2.1580   -0.8232 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0996   -2.0267    0.1716 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6139   -0.6276    0.3347 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5812   -0.2096   -0.7305 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8207    0.2894    0.0228 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.9778    0.0302   -0.6694 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7085   -0.5168    1.2788 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6216   -1.0338    1.9688 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3554   -0.5866    1.5454 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4458    0.3973    0.4341 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2960    1.4689    1.2622 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2907    2.4090    1.3415 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4242    2.2753    0.5978 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5839    1.1757   -0.2551 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7335    1.0788   -0.9798 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5945    0.2497   -0.3284 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6247   -2.6446   -1.7481 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8096   -2.8605   -0.4386 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2784   -2.3730    1.1561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9463   -2.6770   -0.1015 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8554   -1.0063   -1.4318 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2114    0.6768   -1.3011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7039    1.3520    0.3167 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2704    0.8680   -1.1071 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6224    1.5581    1.8519 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1399    3.2466    2.0080 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1985    3.0214    0.6695 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9936    0.3664   -1.6018 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  2  0
  9 11  1  0
  5 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  1  0
 16 18  2  0
 18  2  1  0
  5 11  1  1
 18 12  1  0
  3 19  1  0
  3 20  1  0
  4 21  1  0
  4 22  1  0
  6 23  1  0
  6 24  1  0
  7 25  1  1
  8 26  1  0
 13 27  1  0
 14 28  1  0
 15 29  1  0
 17 30  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  O   UNK     0       2.298  -0.831  -2.257  0.00  0.00           O+0
HETATM    2  C   UNK     0       1.664  -0.913  -1.187  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.013  -2.158  -0.823  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.100  -2.027   0.172  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.614  -0.628   0.335  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.581  -0.210  -0.731  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.821   0.289   0.023  0.00  0.00           C+0
HETATM    8  O   UNK     0      -3.978   0.030  -0.669  0.00  0.00           O+0
HETATM    9  C   UNK     0      -2.708  -0.517   1.279  0.00  0.00           C+0
HETATM   10  O   UNK     0      -3.622  -1.034   1.969  0.00  0.00           O+0
HETATM   11  O   UNK     0      -1.355  -0.587   1.545  0.00  0.00           O+0
HETATM   12  C   UNK     0       0.446   0.397   0.434  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.296   1.469   1.262  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.291   2.409   1.341  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.424   2.275   0.598  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.584   1.176  -0.255  0.00  0.00           C+0
HETATM   17  O   UNK     0       3.733   1.079  -0.980  0.00  0.00           O+0
HETATM   18  C   UNK     0       1.595   0.250  -0.328  0.00  0.00           C+0
HETATM   19  H   UNK     0       0.625  -2.645  -1.748  0.00  0.00           H+0
HETATM   20  H   UNK     0       1.810  -2.861  -0.439  0.00  0.00           H+0
HETATM   21  H   UNK     0       0.278  -2.373   1.156  0.00  0.00           H+0
HETATM   22  H   UNK     0      -0.946  -2.677  -0.102  0.00  0.00           H+0
HETATM   23  H   UNK     0      -1.855  -1.006  -1.432  0.00  0.00           H+0
HETATM   24  H   UNK     0      -1.211   0.677  -1.301  0.00  0.00           H+0
HETATM   25  H   UNK     0      -2.704   1.352   0.317  0.00  0.00           H+0
HETATM   26  H   UNK     0      -4.270   0.868  -1.107  0.00  0.00           H+0
HETATM   27  H   UNK     0      -0.622   1.558   1.852  0.00  0.00           H+0
HETATM   28  H   UNK     0       1.140   3.247   2.008  0.00  0.00           H+0
HETATM   29  H   UNK     0       3.199   3.021   0.670  0.00  0.00           H+0
HETATM   30  H   UNK     0       3.994   0.366  -1.602  0.00  0.00           H+0
CONECT    1    2                                                            
CONECT    2    1    3   18                                                  
CONECT    3    2    4   19   20                                             
CONECT    4    3    5   21   22                                             
CONECT    5    4    6   12   11                                             
CONECT    6    5    7   23   24                                             
CONECT    7    6    8    9   25                                             
CONECT    8    7   26                                                       
CONECT    9    7   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9    5                                                       
CONECT   12    5   13   18                                                  
CONECT   13   12   14   27                                                  
CONECT   14   13   15   28                                                  
CONECT   15   14   16   29                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16   30                                                       
CONECT   18   16    2   12                                                  
CONECT   19    3                                                            
CONECT   20    3                                                            
CONECT   21    4                                                            
CONECT   22    4                                                            
CONECT   23    6                                                            
CONECT   24    6                                                            
CONECT   25    7                                                            
CONECT   26    8                                                            
CONECT   27   13                                                            
CONECT   28   14                                                            
CONECT   29   15                                                            
CONECT   30   17                                                            
MASTER        0    0    0    0    0    0    0    0   30    0   64    0
END

RDKit          3D

30 32  0  0  0  0  0  0  0  0999 V2000
    2.2984   -0.8305   -2.2569 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6639   -0.9128   -1.1865 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0127   -2.1580   -0.8232 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0996   -2.0267    0.1716 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6139   -0.6276    0.3347 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5812   -0.2096   -0.7305 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8207    0.2894    0.0228 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.9778    0.0302   -0.6694 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7085   -0.5168    1.2788 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6216   -1.0338    1.9688 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3554   -0.5866    1.5454 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4458    0.3973    0.4341 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2960    1.4689    1.2622 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2907    2.4090    1.3415 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4242    2.2753    0.5978 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5839    1.1757   -0.2551 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7335    1.0788   -0.9798 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5945    0.2497   -0.3284 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6247   -2.6446   -1.7481 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8096   -2.8605   -0.4386 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2784   -2.3730    1.1561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9463   -2.6770   -0.1015 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8554   -1.0063   -1.4318 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2114    0.6768   -1.3011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7039    1.3520    0.3167 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2704    0.8680   -1.1071 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6224    1.5581    1.8519 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1399    3.2466    2.0080 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1985    3.0214    0.6695 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9936    0.3664   -1.6018 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  2  0
  9 11  1  0
  5 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  1  0
 16 18  2  0
 18  2  1  0
  5 11  1  1
 18 12  1  0
  3 19  1  0
  3 20  1  0
  4 21  1  0
  4 22  1  0
  6 23  1  0
  6 24  1  0
  7 25  1  1
  8 26  1  0
 13 27  1  0
 14 28  1  0
 15 29  1  0
 17 30  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₂H₃₆O₇

Average Mass

412.5230 Da

Monoisotopic Mass

412.24610 Da

IUPAC Name

(1S,4'R)-4',5-dihydroxy-3,4-dihydro-2H-spiro[naphthalene-1,2'-oxolane]-4,5'-dione

Traditional Name

(1S,4'R)-4',5-dihydroxy-2,3-dihydrospiro[naphthalene-1,2'-oxolane]-4,5'-dione

CAS Registry Number

Not Available

SMILES

CCCCCC1OC(=O)CC(O)C(O)\C=C/C(O)C1OC(=O)C(\C)=C\C(C)CC

InChI Identifier

InChI=1S/C22H36O7/c1-5-7-8-9-19-21(29-22(27)15(4)12-14(3)6-2)17(24)11-10-16(23)18(25)13-20(26)28-19/h10-12,14,16-19,21,23-25H,5-9,13H2,1-4H3/b11-10-,15-12+

InChI Key

IRLIXJLJAAXRFK-WTPCJXRQSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Phomopsis	NPAtlas	15580955

Species Where Detected

Species Name	Source	Reference
Phomopsis sp. hzla01-1	KNApSAcK Database	22123792

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as oxocins. Oxocins are compounds containing an oxocin ring, which is a eight-member unsaturated aromatic ring containing one oxygen atom and seven carbon atoms.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Oxocins

Sub Class

Not Available

Direct Parent

Oxocins

Alternative Parents

Substituents

Oxocin
Fatty acid ester
Dicarboxylic acid or derivatives
Fatty acyl
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Secondary alcohol
Lactone
Carboxylic acid ester
Polyol
Carboxylic acid derivative
Oxacycle
Alcohol
Hydrocarbon derivative
Organooxygen compound
Organic oxide
Organic oxygen compound
Carbonyl group
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.14	ALOGPS
logP	1.04	ChemAxon
logS	-1.6	ALOGPS
pKa (Strongest Acidic)	8.59	ChemAxon
pKa (Strongest Basic)	-3.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	83.83 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	61.21 m³·mol⁻¹	ChemAxon
Polarizability	23.79 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA002088

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00048814

Chemspider ID

28282207

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101355781

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Weber D, Sterner O, Anke T, Gorzalczancy S, Martino V, Acevedo C: Phomol, a new antiinflammatory metabolite from an endophyte of the medicinal plant Erythrina crista-galli. J Antibiot (Tokyo). 2004 Sep;57(9):559-63. doi: 10.7164/antibiotics.57.559. [PubMed:15580955 ]

Showing NP-Card for Phomol (NP0005602)

MOL for NP0005602 (Phomol)

3D MOL for NP0005602 (Phomol)

3D SDF for NP0005602 (Phomol)

3D-SDF for NP0005602 (Phomol)

PDB for NP0005602 (Phomol)

3D PDB for NP0005602 (Phomol)

SMILES for NP0005602 (Phomol)

INCHI for NP0005602 (Phomol)

Structure for NP0005602 (Phomol)

3D Structure for NP0005602 (Phomol)