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Record Information
Version1.0
Created at2020-12-09 02:35:07 UTC
Updated at2021-07-15 16:51:38 UTC
NP-MRD IDNP0005309
Secondary Accession NumbersNone
Natural Product Identification
Common NameMadurastatin A3
Provided ByNPAtlasNPAtlas Logo
Description5-(3-{[(2S)-2-{[(2R)-2-amino-1-hydroxy-3-(2-hydroxybenzoyloxy)propylidene]amino}-1-hydroxypropylidene]amino}-N-hydroxypropanamido)-N-[(3S)-1-hydroxy-2-oxopiperidin-3-yl]-2-(methylamino)pentanimidic acid belongs to the class of organic compounds known as hybrid peptides. Hybrid peptides are compounds containing at least two different types of amino acids (alpha, beta, gamma, delta) linked to each other through a peptide bond. Madurastatin A3 is found in Actinomadura madurae. It was first documented in 2004 (PMID: 15112961). Based on a literature review very few articles have been published on 5-(3-{[(2S)-2-{[(2R)-2-amino-1-hydroxy-3-(2-hydroxybenzoyloxy)propylidene]amino}-1-hydroxypropylidene]amino}-N-hydroxypropanamido)-N-[(3S)-1-hydroxy-2-oxopiperidin-3-yl]-2-(methylamino)pentanimidic acid.
Structure
Thumb
Synonyms
ValueSource
5-(3-{[(2S)-2-{[(2R)-2-amino-1-hydroxy-3-(2-hydroxybenzoyloxy)propylidene]amino}-1-hydroxypropylidene]amino}-N-hydroxypropanamido)-N-[(3S)-1-hydroxy-2-oxopiperidin-3-yl]-2-(methylamino)pentanimidateGenerator
Chemical FormulaC27H41N7O10
Average Mass623.6640 Da
Monoisotopic Mass623.29149 Da
IUPAC Name(2R)-2-amino-2-{[(1S)-1-[(2-{hydroxy[(4R)-4-{[(3S)-1-hydroxy-2-oxopiperidin-3-yl]carbamoyl}-4-(methylamino)butyl]carbamoyl}ethyl)carbamoyl]ethyl]carbamoyl}ethyl 2-hydroxybenzoate
Traditional Name(2R)-2-amino-2-{[(1S)-1-[(2-{hydroxy[(4R)-4-{[(3S)-1-hydroxy-2-oxopiperidin-3-yl]carbamoyl}-4-(methylamino)butyl]carbamoyl}ethyl)carbamoyl]ethyl]carbamoyl}ethyl 2-hydroxybenzoate
CAS Registry NumberNot Available
SMILES
CNC(CCCN(O)C(=O)CCNC(=O)[C@H](C)NC(=O)[C@H](N)COC(=O)C1=CC=CC=C1O)C(=O)N[C@H]1CCCN(O)C1=O
InChI Identifier
InChI=1S/C27H41N7O10/c1-16(31-24(38)18(28)15-44-27(41)17-7-3-4-10-21(17)35)23(37)30-12-11-22(36)33(42)13-5-8-19(29-2)25(39)32-20-9-6-14-34(43)26(20)40/h3-4,7,10,16,18-20,29,35,42-43H,5-6,8-9,11-15,28H2,1-2H3,(H,30,37)(H,31,38)(H,32,39)/t16-,18+,19?,20-/m0/s1
InChI KeyKNPIAGSRCKISTI-UVIIYCAGSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Actinomadura maduraeNPAtlas
Chemical Taxonomy
Description Belongs to the class of organic compounds known as hybrid peptides. Hybrid peptides are compounds containing at least two different types of amino acids (alpha, beta, gamma, delta) linked to each other through a peptide bond.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassPeptidomimetics
Sub ClassHybrid peptides
Direct ParentHybrid peptides
Alternative Parents
Substituents
  • Hybrid peptide
  • Alpha-dipeptide
  • N-acyl-alpha amino acid or derivatives
  • Alpha-amino acid amide
  • O-hydroxybenzoic acid ester
  • Alanine or derivatives
  • Beta amino acid or derivatives
  • N-substituted-alpha-amino acid
  • Alpha-amino acid or derivatives
  • Salicylic acid or derivatives
  • Benzoate ester
  • Benzoic acid or derivatives
  • Benzoyl
  • Delta-lactam
  • Piperidinone
  • Phenol
  • 1-hydroxy-2-unsubstituted benzenoid
  • 1-hydroxy-4-unsubstituted benzenoid
  • Benzenoid
  • Fatty acyl
  • Monocyclic benzene moiety
  • Fatty amide
  • Piperidine
  • N-acyl-amine
  • Vinylogous acid
  • Amino acid or derivatives
  • Secondary carboxylic acid amide
  • Carboxamide group
  • Carboxylic acid ester
  • Hydroxamic acid
  • Lactam
  • Monocarboxylic acid or derivatives
  • Azacycle
  • Organoheterocyclic compound
  • Carboxylic acid derivative
  • Secondary amine
  • Secondary aliphatic amine
  • Carbonyl group
  • Organic oxygen compound
  • Primary aliphatic amine
  • Organonitrogen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Amine
  • Organic nitrogen compound
  • Organooxygen compound
  • Primary amine
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.45ALOGPS
logP-2.9ChemAxon
logS-3ALOGPS
pKa (Strongest Acidic)7.93ChemAxon
pKa (Strongest Basic)8.83ChemAxon
Physiological Charge2ChemAxon
Hydrogen Acceptor Count11ChemAxon
Hydrogen Donor Count8ChemAxon
Polar Surface Area252.96 ŲChemAxon
Rotatable Bond Count17ChemAxon
Refractivity153.77 m³·mol⁻¹ChemAxon
Polarizability63.56 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA019843
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78438656
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139588613
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Harada K, Tomita K, Fujii K, Masuda K, Mikami Y, Yazawa K, Komaki H: Isolation and structural characterization of siderophores, madurastatins, produced by a pathogenic Actinomadura madurae. J Antibiot (Tokyo). 2004 Feb;57(2):125-35. doi: 10.7164/antibiotics.57.125. [PubMed:15112961 ]