NP-MRD: Showing NP-Card for (1S,3aR)-jadomycin F (NP0005241)

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Record Information

Version

2.0

Created at

2020-12-09 02:32:32 UTC

Updated at

2021-07-15 16:51:26 UTC

NP-MRD ID

NP0005241

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1S,3aR)-jadomycin F

Provided By

NPAtlas

Description

(1S,3aR)-jadomycin F is found in Streptomyces and Streptomyces venezuelae. Based on a literature review very few articles have been published on (1S,3aR)-jadomycin F.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118173D          

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M  END

     RDKit          3D

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 14 53  1  0
 16 54  1  0
 17 55  1  0
 18 56  1  0
 19 57  1  0
 20 58  1  0
 27 59  1  0
 28 60  1  0
 29 61  1  0
 32 62  1  6
 33 63  1  0
 33 64  1  0
 34 65  1  6
 35 66  1  0
 36 67  1  6
 37 68  1  0
 38 69  1  1
 39 70  1  0
 39 71  1  0
 39 72  1  0
M  END


  Mrv1652306242118173D          

 72 78  0  0  0  0            999 V2000
   -6.7945   -4.5733   -0.2264 C   0  0  0  0  0  0  0  0  0  0  0  0
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  8  2  1  0  0  0  0
 21  9  1  0  0  0  0
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 23  6  1  0  0  0  0
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 39 72  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0005241

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C2C(=C([H])C(=C1[H])C([H])([H])[H])[C@@]1([H])OC(=O)[C@@]([H])(N1C1=C2C(=O)C2=C([H])C([H])=C([H])C(O[C@]3([H])O[C@@]([H])(C([H])([H])[H])[C@]([H])(O[H])[C@]([H])(O[H])C3([H])[H])=C2C1=O)C([H])([H])C1=C([H])C([H])=C([H])C([H])=C1[H]

> <INCHI_IDENTIFIER>
InChI=1S/C33H29NO9/c1-15-11-19-25(21(35)12-15)27-28(34-20(33(40)43-32(19)34)13-17-7-4-3-5-8-17)31(39)26-18(30(27)38)9-6-10-23(26)42-24-14-22(36)29(37)16(2)41-24/h3-12,16,20,22,24,29,32,35-37H,13-14H2,1-2H3/t16-,20-,22+,24-,29-,32+/m0/s1

> <INCHI_KEY>
OCASEYRRLPLBRV-HNVNUWMMSA-N

> <FORMULA>
C33H29NO9

> <MOLECULAR_WEIGHT>
583.593

> <EXACT_MASS>
583.184231518

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
72

> <JCHEM_AVERAGE_POLARIZABILITY>
60.24608659404748

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3S,6R)-3-benzyl-19-{[(2S,4R,5R,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-11-hydroxy-9-methyl-5-oxa-2-azapentacyclo[11.8.0.0^{2,6}.0^{7,12}.0^{15,20}]henicosa-1(13),7,9,11,15(20),16,18-heptaene-4,14,21-trione

> <ALOGPS_LOGP>
2.89

> <JCHEM_LOGP>
4.162514569666666

> <ALOGPS_LOGS>
-3.92

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.864336822336568

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.183421684534077

> <JCHEM_PKA_STRONGEST_BASIC>
-3.2528866875223716

> <JCHEM_POLAR_SURFACE_AREA>
142.83

> <JCHEM_REFRACTIVITY>
153.7123

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.06e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3S,6R)-3-benzyl-19-{[(2S,4R,5R,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-11-hydroxy-9-methyl-5-oxa-2-azapentacyclo[11.8.0.0^{2,6}.0^{7,12}.0^{15,20}]henicosa-1(13),7,9,11,15(20),16,18-heptaene-4,14,21-trione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 72 78  0  0  0  0  0  0  0  0999 V2000
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   -0.8797    5.9889    0.8109 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4834    3.7043   -0.0492 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0155   -5.1186   -0.9775 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3217   -4.2540   -1.0486 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7950   -1.8761   -0.7366 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9148    0.0780   -0.4569 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8730    1.8565   -1.7472 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6193    1.5534   -2.1437 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3728    3.8522   -1.5626 H   0  0  0  0  0  0  0  0  0  0  0  0
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    6.3487    2.4745   -0.7692 H   0  0  0  0  0  0  0  0  0  0  0  0
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    5.2699    2.5946    2.0271 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3954    0.2448    2.0022 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9529    0.7017    0.3104 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3793    1.6942    1.7203 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  4  6  2  0
  6  7  1  0
  7  8  2  0
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 41 42  1  0
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  8  2  1  0
 21  9  1  0
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 34 65  1  6
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 39 70  1  0
 39 71  1  0
 39 72  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -6.795  -4.573  -0.226  0.00  0.00           C+0
HETATM    2  C   UNK     0      -5.364  -4.115  -0.269  0.00  0.00           C+0
HETATM    3  C   UNK     0      -4.338  -4.997  -0.438  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.988  -4.616  -0.484  0.00  0.00           C+0
HETATM    5  O   UNK     0      -2.063  -5.600  -0.658  0.00  0.00           O+0
HETATM    6  C   UNK     0      -2.684  -3.299  -0.353  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.732  -2.363  -0.177  0.00  0.00           C+0
HETATM    8  C   UNK     0      -5.027  -2.792  -0.140  0.00  0.00           C+0
HETATM    9  C   UNK     0      -3.507  -0.919  -0.057  0.00  0.00           C+0
HETATM   10  O   UNK     0      -4.078  -0.354   1.096  0.00  0.00           O+0
HETATM   11  C   UNK     0      -3.336   0.796   1.399  0.00  0.00           C+0
HETATM   12  O   UNK     0      -3.700   1.633   2.236  0.00  0.00           O+0
HETATM   13  C   UNK     0      -2.093   0.777   0.539  0.00  0.00           C+0
HETATM   14  C   UNK     0      -2.325   1.763  -0.576  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.560   3.136  -0.063  0.00  0.00           C+0
HETATM   16  C   UNK     0      -3.820   3.613   0.225  0.00  0.00           C+0
HETATM   17  C   UNK     0      -4.038   4.902   0.710  0.00  0.00           C+0
HETATM   18  C   UNK     0      -2.978   5.747   0.917  0.00  0.00           C+0
HETATM   19  C   UNK     0      -1.694   5.295   0.636  0.00  0.00           C+0
HETATM   20  C   UNK     0      -1.496   4.015   0.156  0.00  0.00           C+0
HETATM   21  N   UNK     0      -2.122  -0.587   0.092  0.00  0.00           N+0
HETATM   22  C   UNK     0      -1.082  -1.516  -0.173  0.00  0.00           C+0
HETATM   23  C   UNK     0      -1.298  -2.829  -0.352  0.00  0.00           C+0
HETATM   24  C   UNK     0      -0.209  -3.737  -0.581  0.00  0.00           C+0
HETATM   25  O   UNK     0      -0.322  -4.937  -0.750  0.00  0.00           O+0
HETATM   26  C   UNK     0       1.172  -3.221  -0.623  0.00  0.00           C+0
HETATM   27  C   UNK     0       2.222  -4.062  -0.839  0.00  0.00           C+0
HETATM   28  C   UNK     0       3.517  -3.566  -0.877  0.00  0.00           C+0
HETATM   29  C   UNK     0       3.777  -2.224  -0.700  0.00  0.00           C+0
HETATM   30  C   UNK     0       2.723  -1.368  -0.482  0.00  0.00           C+0
HETATM   31  O   UNK     0       2.845  -0.020  -0.292  0.00  0.00           O+0
HETATM   32  C   UNK     0       4.039   0.703  -0.288  0.00  0.00           C+0
HETATM   33  C   UNK     0       3.890   1.787  -1.348  0.00  0.00           C+0
HETATM   34  C   UNK     0       4.298   3.112  -0.740  0.00  0.00           C+0
HETATM   35  O   UNK     0       3.354   3.595   0.160  0.00  0.00           O+0
HETATM   36  C   UNK     0       5.624   2.892  -0.044  0.00  0.00           C+0
HETATM   37  O   UNK     0       6.150   4.097   0.406  0.00  0.00           O+0
HETATM   38  C   UNK     0       5.367   1.962   1.120  0.00  0.00           C+0
HETATM   39  C   UNK     0       6.563   1.077   1.289  0.00  0.00           C+0
HETATM   40  O   UNK     0       4.177   1.264   0.982  0.00  0.00           O+0
HETATM   41  C   UNK     0       1.423  -1.896  -0.448  0.00  0.00           C+0
HETATM   42  C   UNK     0       0.291  -1.013  -0.218  0.00  0.00           C+0
HETATM   43  O   UNK     0       0.501   0.229  -0.052  0.00  0.00           O+0
HETATM   44  H   UNK     0      -7.066  -4.591   0.859  0.00  0.00           H+0
HETATM   45  H   UNK     0      -7.444  -3.835  -0.710  0.00  0.00           H+0
HETATM   46  H   UNK     0      -6.878  -5.594  -0.609  0.00  0.00           H+0
HETATM   47  H   UNK     0      -4.568  -6.052  -0.545  0.00  0.00           H+0
HETATM   48  H   UNK     0      -2.334  -6.595  -0.752  0.00  0.00           H+0
HETATM   49  H   UNK     0      -5.861  -2.082  -0.003  0.00  0.00           H+0
HETATM   50  H   UNK     0      -3.966  -0.370  -0.927  0.00  0.00           H+0
HETATM   51  H   UNK     0      -1.253   1.064   1.168  0.00  0.00           H+0
HETATM   52  H   UNK     0      -1.409   1.818  -1.198  0.00  0.00           H+0
HETATM   53  H   UNK     0      -3.187   1.484  -1.207  0.00  0.00           H+0
HETATM   54  H   UNK     0      -4.691   3.001   0.082  0.00  0.00           H+0
HETATM   55  H   UNK     0      -5.035   5.266   0.933  0.00  0.00           H+0
HETATM   56  H   UNK     0      -3.134   6.757   1.296  0.00  0.00           H+0
HETATM   57  H   UNK     0      -0.880   5.989   0.811  0.00  0.00           H+0
HETATM   58  H   UNK     0      -0.483   3.704  -0.049  0.00  0.00           H+0
HETATM   59  H   UNK     0       2.015  -5.119  -0.978  0.00  0.00           H+0
HETATM   60  H   UNK     0       4.322  -4.254  -1.049  0.00  0.00           H+0
HETATM   61  H   UNK     0       4.795  -1.876  -0.737  0.00  0.00           H+0
HETATM   62  H   UNK     0       4.915   0.078  -0.457  0.00  0.00           H+0
HETATM   63  H   UNK     0       2.873   1.857  -1.747  0.00  0.00           H+0
HETATM   64  H   UNK     0       4.619   1.553  -2.144  0.00  0.00           H+0
HETATM   65  H   UNK     0       4.373   3.852  -1.563  0.00  0.00           H+0
HETATM   66  H   UNK     0       3.667   3.589   1.095  0.00  0.00           H+0
HETATM   67  H   UNK     0       6.349   2.474  -0.769  0.00  0.00           H+0
HETATM   68  H   UNK     0       5.982   4.855  -0.195  0.00  0.00           H+0
HETATM   69  H   UNK     0       5.270   2.595   2.027  0.00  0.00           H+0
HETATM   70  H   UNK     0       6.395   0.245   2.002  0.00  0.00           H+0
HETATM   71  H   UNK     0       6.953   0.702   0.310  0.00  0.00           H+0
HETATM   72  H   UNK     0       7.379   1.694   1.720  0.00  0.00           H+0
CONECT    1    2   44   45   46                                             
CONECT    2    1    3    8                                                  
CONECT    3    2    4   47                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4   48                                                       
CONECT    6    4    7   23                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7    2   49                                                  
CONECT    9    7   10   21   50                                             
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   21   51                                             
CONECT   14   13   15   52   53                                             
CONECT   15   14   16   20                                                  
CONECT   16   15   17   54                                                  
CONECT   17   16   18   55                                                  
CONECT   18   17   19   56                                                  
CONECT   19   18   20   57                                                  
CONECT   20   19   15   58                                                  
CONECT   21   13   22    9                                                  
CONECT   22   21   23   42                                                  
CONECT   23   22   24    6                                                  
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27   41                                                  
CONECT   27   26   28   59                                                  
CONECT   28   27   29   60                                                  
CONECT   29   28   30   61                                                  
CONECT   30   29   31   41                                                  
CONECT   31   30   32                                                       
CONECT   32   31   33   40   62                                             
CONECT   33   32   34   63   64                                             
CONECT   34   33   35   36   65                                             
CONECT   35   34   66                                                       
CONECT   36   34   37   38   67                                             
CONECT   37   36   68                                                       
CONECT   38   36   39   40   69                                             
CONECT   39   38   70   71   72                                             
CONECT   40   38   32                                                       
CONECT   41   30   42   26                                                  
CONECT   42   41   43   22                                                  
CONECT   43   42                                                            
CONECT   44    1                                                            
CONECT   45    1                                                            
CONECT   46    1                                                            
CONECT   47    3                                                            
CONECT   48    5                                                            
CONECT   49    8                                                            
CONECT   50    9                                                            
CONECT   51   13                                                            
CONECT   52   14                                                            
CONECT   53   14                                                            
CONECT   54   16                                                            
CONECT   55   17                                                            
CONECT   56   18                                                            
CONECT   57   19                                                            
CONECT   58   20                                                            
CONECT   59   27                                                            
CONECT   60   28                                                            
CONECT   61   29                                                            
CONECT   62   32                                                            
CONECT   63   33                                                            
CONECT   64   33                                                            
CONECT   65   34                                                            
CONECT   66   35                                                            
CONECT   67   36                                                            
CONECT   68   37                                                            
CONECT   69   38                                                            
CONECT   70   39                                                            
CONECT   71   39                                                            
CONECT   72   39                                                            
MASTER        0    0    0    0    0    0    0    0   72    0  156    0
END

RDKit          3D

72 78  0  0  0  0  0  0  0  0999 V2000
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    4.3217   -4.2540   -1.0486 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7950   -1.8761   -0.7366 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9148    0.0780   -0.4569 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8730    1.8565   -1.7472 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6193    1.5534   -2.1437 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3728    3.8522   -1.5626 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6668    3.5888    1.0953 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3487    2.4745   -0.7692 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9816    4.8550   -0.1946 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2699    2.5946    2.0271 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3954    0.2448    2.0022 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9529    0.7017    0.3104 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3793    1.6942    1.7203 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  4  6  2  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
 13 21  1  0
 21 22  1  0
 22 23  2  0
 23 24  1  0
 24 25  2  0
 24 26  1  0
 26 27  2  0
 27 28  1  0
 28 29  2  0
 29 30  1  0
 30 31  1  0
 31 32  1  0
 32 33  1  0
 33 34  1  0
 34 35  1  0
 34 36  1  0
 36 37  1  0
 36 38  1  0
 38 39  1  0
 38 40  1  0
 30 41  2  0
 41 42  1  0
 42 43  2  0
  8  2  1  0
 21  9  1  0
 42 22  1  0
 23  6  1  0
 41 26  1  0
 20 15  1  0
 40 32  1  0
  1 44  1  0
  1 45  1  0
  1 46  1  0
  3 47  1  0
  5 48  1  0
  8 49  1  0
  9 50  1  6
 13 51  1  1
 14 52  1  0
 14 53  1  0
 16 54  1  0
 17 55  1  0
 18 56  1  0
 19 57  1  0
 20 58  1  0
 27 59  1  0
 28 60  1  0
 29 61  1  0
 32 62  1  6
 33 63  1  0
 33 64  1  0
 34 65  1  6
 35 66  1  0
 36 67  1  6
 37 68  1  0
 38 69  1  1
 39 70  1  0
 39 71  1  0
 39 72  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₃₃H₂₉NO₉

Average Mass

583.5930 Da

Monoisotopic Mass

583.18423 Da

IUPAC Name

(3S,6R)-3-benzyl-19-{[(2S,4R,5R,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-11-hydroxy-9-methyl-5-oxa-2-azapentacyclo[11.8.0.0^{2,6}.0^{7,12}.0^{15,20}]henicosa-1(13),7,9,11,15(20),16,18-heptaene-4,14,21-trione

Traditional Name

CAS Registry Number

Not Available

SMILES

C[C@@H]1O[C@H](C[C@@H](O)[C@H]1O)OC1=CC=CC2=C1C(=O)C1=C(C2=O)C2=C(O)C=C(C)C=C2[C@H]2OC(=O)[C@H](CC3=CC=CC=C3)N12

InChI Identifier

InChI=1S/C33H29NO9/c1-15-11-19-25(21(35)12-15)27-28(34-20(33(40)43-32(19)34)13-17-7-4-3-5-8-17)31(39)26-18(30(27)38)9-6-10-23(26)42-24-14-22(36)29(37)16(2)41-24/h3-12,16,20,22,24,29,32,35-37H,13-14H2,1-2H3/t16-,20-,22+,24-,29-,32+/m0/s1

InChI Key

OCASEYRRLPLBRV-HNVNUWMMSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	15070349
Streptomyces venezuelae	LOTUS Database	35616633

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.89	ALOGPS
logP	4.16	ChemAxon
logS	-3.9	ALOGPS
pKa (Strongest Acidic)	8.18	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	142.83 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	153.71 m³·mol⁻¹	ChemAxon
Polarizability	60.25 Å³	ChemAxon
Number of Rings	7	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA009189

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78437334

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139585647

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for (1S,3aR)-jadomycin F (NP0005241)

MOL for NP0005241 ((1S,3aR)-jadomycin F)

3D MOL for NP0005241 ((1S,3aR)-jadomycin F)

3D SDF for NP0005241 ((1S,3aR)-jadomycin F)

3D-SDF for NP0005241 ((1S,3aR)-jadomycin F)

PDB for NP0005241 ((1S,3aR)-jadomycin F)

3D PDB for NP0005241 ((1S,3aR)-jadomycin F)

SMILES for NP0005241 ((1S,3aR)-jadomycin F)

INCHI for NP0005241 ((1S,3aR)-jadomycin F)

Structure for NP0005241 ((1S,3aR)-jadomycin F)

3D Structure for NP0005241 ((1S,3aR)-jadomycin F)