NP-MRD: Showing NP-Card for Dihydroarcyriarubin C (NP0004981)

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Record Information

Version

2.0

Created at

2020-12-09 02:21:36 UTC

Updated at

2021-07-15 16:50:43 UTC

NP-MRD ID

NP0004981

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Dihydroarcyriarubin C

Provided By

NPAtlas

Description

Dihydroarcyriarubin C is found in Arcyria ferruginea. Dihydroarcyriarubin C was first documented in 2003 (PMID: 14611848). Based on a literature review very few articles have been published on 5-hydroxy-3,4-bis(6-hydroxy-1H-indol-3-yl)-3,4-dihydro-2H-pyrrol-2-one.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118153D          

 42 46  0  0  0  0            999 V2000
    0.9008    1.6920    1.2774 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4401    0.6726    0.9091 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5704   -0.6942    1.3501 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2641   -1.5463    0.2107 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0545   -2.7511    0.2888 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3026   -0.5455   -0.8403 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6257    0.2433   -0.8625 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7449    1.5593   -1.2546 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0277    1.9470   -1.2252 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7482    0.8943   -0.8227 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1159    0.7376   -0.5580 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5490   -0.4688   -0.0675 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9145   -0.6407    0.2010 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6953   -1.5281    0.1682 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3410   -1.3624   -0.1077 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8860   -0.1780   -0.5903 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6147    0.4561   -0.3458 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7684    0.4592    0.4693 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9276    1.1196    1.6906 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2392    1.1154    2.0205 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9559    0.4732    1.0764 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2845    0.1569    0.9027 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6871   -0.5466   -0.1907 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0424   -0.8525   -0.3489 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7764   -0.9540   -1.1388 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4303   -0.6510   -0.9966 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0506    0.0622    0.1144 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8367   -1.0326    2.2979 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2206   -0.8717   -1.8873 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9398    2.2190   -1.5699 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3755    2.8773   -1.4714 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7523    1.5626   -0.7582 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5436    0.1613    0.0222 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0098   -2.4923    0.5661 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6299   -2.1671    0.0609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4375    1.4212   -0.8691 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1880    1.5997    2.3140 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6697    1.5465    2.8723 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9773    0.4986    1.6854 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6210   -0.1711   -0.8845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1333   -1.5158   -1.9907 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6848   -0.9569   -1.7172 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
  6 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 17  2  1  0  0  0  0
 27 18  1  0  0  0  0
 16  7  1  0  0  0  0
 27 21  1  0  0  0  0
 16 10  1  0  0  0  0
  3 28  1  0  0  0  0
  6 29  1  6  0  0  0
  8 30  1  0  0  0  0
  9 31  1  0  0  0  0
 11 32  1  0  0  0  0
 13 33  1  0  0  0  0
 14 34  1  0  0  0  0
 15 35  1  0  0  0  0
 17 36  1  6  0  0  0
 19 37  1  0  0  0  0
 20 38  1  0  0  0  0
 22 39  1  0  0  0  0
 24 40  1  0  0  0  0
 25 41  1  0  0  0  0
 26 42  1  0  0  0  0
M  END

     RDKit          3D

 42 46  0  0  0  0  0  0  0  0999 V2000
    0.9008    1.6920    1.2774 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4401    0.6726    0.9091 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5704   -0.6942    1.3501 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2641   -1.5463    0.2107 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0545   -2.7511    0.2888 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3026   -0.5455   -0.8403 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6257    0.2433   -0.8625 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7449    1.5593   -1.2546 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0277    1.9470   -1.2252 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7482    0.8943   -0.8227 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1159    0.7376   -0.5580 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5490   -0.4688   -0.0675 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9145   -0.6407    0.2010 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6953   -1.5281    0.1682 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3410   -1.3624   -0.1077 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8860   -0.1780   -0.5903 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6147    0.4561   -0.3458 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7684    0.4592    0.4693 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9276    1.1196    1.6906 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2392    1.1154    2.0205 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9559    0.4732    1.0764 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2845    0.1569    0.9027 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6871   -0.5466   -0.1907 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0424   -0.8525   -0.3489 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7764   -0.9540   -1.1388 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4303   -0.6510   -0.9966 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0506    0.0622    0.1144 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8367   -1.0326    2.2979 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2206   -0.8717   -1.8873 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9398    2.2190   -1.5699 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3755    2.8773   -1.4714 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7523    1.5626   -0.7582 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5436    0.1613    0.0222 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0098   -2.4923    0.5661 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6299   -2.1671    0.0609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4375    1.4212   -0.8691 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1880    1.5997    2.3140 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6697    1.5465    2.8723 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9773    0.4986    1.6854 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6210   -0.1711   -0.8845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1333   -1.5158   -1.9907 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6848   -0.9569   -1.7172 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  1  0
 12 14  2  0
 14 15  1  0
 15 16  2  0
  6 17  1  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  1  0
 23 25  2  0
 25 26  1  0
 26 27  2  0
 17  2  1  0
 27 18  1  0
 16  7  1  0
 27 21  1  0
 16 10  1  0
  3 28  1  0
  6 29  1  6
  8 30  1  0
  9 31  1  0
 11 32  1  0
 13 33  1  0
 14 34  1  0
 15 35  1  0
 17 36  1  6
 19 37  1  0
 20 38  1  0
 22 39  1  0
 24 40  1  0
 25 41  1  0
 26 42  1  0
M  END


  Mrv1652306242118153D          

 42 46  0  0  0  0            999 V2000
    0.9008    1.6920    1.2774 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4401    0.6726    0.9091 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5704   -0.6942    1.3501 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2641   -1.5463    0.2107 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0545   -2.7511    0.2888 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3026   -0.5455   -0.8403 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6257    0.2433   -0.8625 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7449    1.5593   -1.2546 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0277    1.9470   -1.2252 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7482    0.8943   -0.8227 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1159    0.7376   -0.5580 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5490   -0.4688   -0.0675 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9145   -0.6407    0.2010 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6953   -1.5281    0.1682 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3410   -1.3624   -0.1077 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8860   -0.1780   -0.5903 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6147    0.4561   -0.3458 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7684    0.4592    0.4693 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9276    1.1196    1.6906 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2392    1.1154    2.0205 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9559    0.4732    1.0764 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2845    0.1569    0.9027 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6871   -0.5466   -0.1907 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0424   -0.8525   -0.3489 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7764   -0.9540   -1.1388 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4303   -0.6510   -0.9966 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0506    0.0622    0.1144 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8367   -1.0326    2.2979 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2206   -0.8717   -1.8873 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9398    2.2190   -1.5699 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3755    2.8773   -1.4714 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7523    1.5626   -0.7582 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5436    0.1613    0.0222 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0098   -2.4923    0.5661 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6299   -2.1671    0.0609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4375    1.4212   -0.8691 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1880    1.5997    2.3140 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6697    1.5465    2.8723 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9773    0.4986    1.6854 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6210   -0.1711   -0.8845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1333   -1.5158   -1.9907 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6848   -0.9569   -1.7172 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
  6 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 17  2  1  0  0  0  0
 27 18  1  0  0  0  0
 16  7  1  0  0  0  0
 27 21  1  0  0  0  0
 16 10  1  0  0  0  0
  3 28  1  0  0  0  0
  6 29  1  6  0  0  0
  8 30  1  0  0  0  0
  9 31  1  0  0  0  0
 11 32  1  0  0  0  0
 13 33  1  0  0  0  0
 14 34  1  0  0  0  0
 15 35  1  0  0  0  0
 17 36  1  6  0  0  0
 19 37  1  0  0  0  0
 20 38  1  0  0  0  0
 22 39  1  0  0  0  0
 24 40  1  0  0  0  0
 25 41  1  0  0  0  0
 26 42  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0004981

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C([H])C([H])=C2C(N([H])C([H])=C2[C@@]2([H])C(=O)N([H])C(=O)[C@]2([H])C2=C([H])N([H])C3=C([H])C(O[H])=C([H])C([H])=C23)=C1[H]

> <INCHI_IDENTIFIER>
InChI=1S/C20H15N3O4/c24-9-1-3-11-13(7-21-15(11)5-9)17-18(20(27)23-19(17)26)14-8-22-16-6-10(25)2-4-12(14)16/h1-8,17-18,21-22,24-25H,(H,23,26,27)/t17-,18-/m1/s1

> <INCHI_KEY>
MDOQJLLAKJRIGD-UHFFFAOYSA-N

> <FORMULA>
C20H15N3O4

> <MOLECULAR_WEIGHT>
361.357

> <EXACT_MASS>
361.106255975

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
42

> <JCHEM_AVERAGE_POLARIZABILITY>
37.376089707044834

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3S,4S)-3,4-bis(6-hydroxy-1H-indol-3-yl)pyrrolidine-2,5-dione

> <ALOGPS_LOGP>
3.03

> <JCHEM_LOGP>
1.9505022836666668

> <ALOGPS_LOGS>
-3.71

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.588873900276456

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.103163925433273

> <JCHEM_PKA_STRONGEST_BASIC>
-5.529379302157239

> <JCHEM_POLAR_SURFACE_AREA>
118.21

> <JCHEM_REFRACTIVITY>
97.75520000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
7.07e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3S,4S)-3,4-bis(6-hydroxy-1H-indol-3-yl)pyrrolidine-2,5-dione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 42 46  0  0  0  0  0  0  0  0999 V2000
    0.9008    1.6920    1.2774 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4401    0.6726    0.9091 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5704   -0.6942    1.3501 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2641   -1.5463    0.2107 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0545   -2.7511    0.2888 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3026   -0.5455   -0.8403 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6257    0.2433   -0.8625 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7449    1.5593   -1.2546 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0277    1.9470   -1.2252 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7482    0.8943   -0.8227 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1159    0.7376   -0.5580 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5490   -0.4688   -0.0675 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9145   -0.6407    0.2010 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6953   -1.5281    0.1682 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3410   -1.3624   -0.1077 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8860   -0.1780   -0.5903 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6147    0.4561   -0.3458 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7684    0.4592    0.4693 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9276    1.1196    1.6906 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2392    1.1154    2.0205 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9559    0.4732    1.0764 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2845    0.1569    0.9027 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6871   -0.5466   -0.1907 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0424   -0.8525   -0.3489 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7764   -0.9540   -1.1388 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4303   -0.6510   -0.9966 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0506    0.0622    0.1144 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8367   -1.0326    2.2979 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2206   -0.8717   -1.8873 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9398    2.2190   -1.5699 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3755    2.8773   -1.4714 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7523    1.5626   -0.7582 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5436    0.1613    0.0222 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0098   -2.4923    0.5661 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6299   -2.1671    0.0609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4375    1.4212   -0.8691 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1880    1.5997    2.3140 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6697    1.5465    2.8723 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9773    0.4986    1.6854 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6210   -0.1711   -0.8845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1333   -1.5158   -1.9907 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6848   -0.9569   -1.7172 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  1  0
 12 14  2  0
 14 15  1  0
 15 16  2  0
  6 17  1  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  1  0
 23 25  2  0
 25 26  1  0
 26 27  2  0
 17  2  1  0
 27 18  1  0
 16  7  1  0
 27 21  1  0
 16 10  1  0
  3 28  1  0
  6 29  1  6
  8 30  1  0
  9 31  1  0
 11 32  1  0
 13 33  1  0
 14 34  1  0
 15 35  1  0
 17 36  1  6
 19 37  1  0
 20 38  1  0
 22 39  1  0
 24 40  1  0
 25 41  1  0
 26 42  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  O   UNK     0       0.901   1.692   1.277  0.00  0.00           O+0
HETATM    2  C   UNK     0       0.440   0.673   0.909  0.00  0.00           C+0
HETATM    3  N   UNK     0       0.570  -0.694   1.350  0.00  0.00           N+0
HETATM    4  C   UNK     0       0.264  -1.546   0.211  0.00  0.00           C+0
HETATM    5  O   UNK     0       0.055  -2.751   0.289  0.00  0.00           O+0
HETATM    6  C   UNK     0       0.303  -0.546  -0.840  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.626   0.243  -0.863  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.745   1.559  -1.255  0.00  0.00           C+0
HETATM    9  N   UNK     0       3.028   1.947  -1.225  0.00  0.00           N+0
HETATM   10  C   UNK     0       3.748   0.894  -0.823  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.116   0.738  -0.558  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.549  -0.469  -0.068  0.00  0.00           C+0
HETATM   13  O   UNK     0       6.915  -0.641   0.201  0.00  0.00           O+0
HETATM   14  C   UNK     0       4.695  -1.528   0.168  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.341  -1.362  -0.108  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.886  -0.178  -0.590  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.615   0.456  -0.346  0.00  0.00           C+0
HETATM   18  C   UNK     0      -1.768   0.459   0.469  0.00  0.00           C+0
HETATM   19  C   UNK     0      -1.928   1.120   1.691  0.00  0.00           C+0
HETATM   20  N   UNK     0      -3.239   1.115   2.021  0.00  0.00           N+0
HETATM   21  C   UNK     0      -3.956   0.473   1.076  0.00  0.00           C+0
HETATM   22  C   UNK     0      -5.285   0.157   0.903  0.00  0.00           C+0
HETATM   23  C   UNK     0      -5.687  -0.547  -0.191  0.00  0.00           C+0
HETATM   24  O   UNK     0      -7.042  -0.853  -0.349  0.00  0.00           O+0
HETATM   25  C   UNK     0      -4.776  -0.954  -1.139  0.00  0.00           C+0
HETATM   26  C   UNK     0      -3.430  -0.651  -0.997  0.00  0.00           C+0
HETATM   27  C   UNK     0      -3.051   0.062   0.114  0.00  0.00           C+0
HETATM   28  H   UNK     0       0.837  -1.033   2.298  0.00  0.00           H+0
HETATM   29  H   UNK     0       0.221  -0.872  -1.887  0.00  0.00           H+0
HETATM   30  H   UNK     0       0.940   2.219  -1.570  0.00  0.00           H+0
HETATM   31  H   UNK     0       3.376   2.877  -1.471  0.00  0.00           H+0
HETATM   32  H   UNK     0       5.752   1.563  -0.758  0.00  0.00           H+0
HETATM   33  H   UNK     0       7.544   0.161   0.022  0.00  0.00           H+0
HETATM   34  H   UNK     0       5.010  -2.492   0.566  0.00  0.00           H+0
HETATM   35  H   UNK     0       2.630  -2.167   0.061  0.00  0.00           H+0
HETATM   36  H   UNK     0      -0.438   1.421  -0.869  0.00  0.00           H+0
HETATM   37  H   UNK     0      -1.188   1.600   2.314  0.00  0.00           H+0
HETATM   38  H   UNK     0      -3.670   1.547   2.872  0.00  0.00           H+0
HETATM   39  H   UNK     0      -5.977   0.499   1.685  0.00  0.00           H+0
HETATM   40  H   UNK     0      -7.621  -0.171  -0.885  0.00  0.00           H+0
HETATM   41  H   UNK     0      -5.133  -1.516  -1.991  0.00  0.00           H+0
HETATM   42  H   UNK     0      -2.685  -0.957  -1.717  0.00  0.00           H+0
CONECT    1    2                                                            
CONECT    2    1    3   17                                                  
CONECT    3    2    4   28                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7   17   29                                             
CONECT    7    6    8   16                                                  
CONECT    8    7    9   30                                                  
CONECT    9    8   10   31                                                  
CONECT   10    9   11   16                                                  
CONECT   11   10   12   32                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12   33                                                       
CONECT   14   12   15   34                                                  
CONECT   15   14   16   35                                                  
CONECT   16   15    7   10                                                  
CONECT   17    6   18    2   36                                             
CONECT   18   17   19   27                                                  
CONECT   19   18   20   37                                                  
CONECT   20   19   21   38                                                  
CONECT   21   20   22   27                                                  
CONECT   22   21   23   39                                                  
CONECT   23   22   24   25                                                  
CONECT   24   23   40                                                       
CONECT   25   23   26   41                                                  
CONECT   26   25   27   42                                                  
CONECT   27   26   18   21                                                  
CONECT   28    3                                                            
CONECT   29    6                                                            
CONECT   30    8                                                            
CONECT   31    9                                                            
CONECT   32   11                                                            
CONECT   33   13                                                            
CONECT   34   14                                                            
CONECT   35   15                                                            
CONECT   36   17                                                            
CONECT   37   19                                                            
CONECT   38   20                                                            
CONECT   39   22                                                            
CONECT   40   24                                                            
CONECT   41   25                                                            
CONECT   42   26                                                            
MASTER        0    0    0    0    0    0    0    0   42    0   92    0
END

RDKit          3D

42 46  0  0  0  0  0  0  0  0999 V2000
    0.9008    1.6920    1.2774 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4401    0.6726    0.9091 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5704   -0.6942    1.3501 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2641   -1.5463    0.2107 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0545   -2.7511    0.2888 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3026   -0.5455   -0.8403 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6257    0.2433   -0.8625 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7449    1.5593   -1.2546 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0277    1.9470   -1.2252 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7482    0.8943   -0.8227 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1159    0.7376   -0.5580 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5490   -0.4688   -0.0675 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9145   -0.6407    0.2010 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6953   -1.5281    0.1682 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3410   -1.3624   -0.1077 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8860   -0.1780   -0.5903 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6147    0.4561   -0.3458 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7684    0.4592    0.4693 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9276    1.1196    1.6906 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2392    1.1154    2.0205 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9559    0.4732    1.0764 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2845    0.1569    0.9027 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6871   -0.5466   -0.1907 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0424   -0.8525   -0.3489 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7764   -0.9540   -1.1388 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4303   -0.6510   -0.9966 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0506    0.0622    0.1144 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8367   -1.0326    2.2979 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2206   -0.8717   -1.8873 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9398    2.2190   -1.5699 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3755    2.8773   -1.4714 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7523    1.5626   -0.7582 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5436    0.1613    0.0222 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0098   -2.4923    0.5661 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6299   -2.1671    0.0609 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4375    1.4212   -0.8691 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1880    1.5997    2.3140 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6697    1.5465    2.8723 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9773    0.4986    1.6854 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6210   -0.1711   -0.8845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1333   -1.5158   -1.9907 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6848   -0.9569   -1.7172 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  4  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  1  0
 12 14  2  0
 14 15  1  0
 15 16  2  0
  6 17  1  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  1  0
 23 25  2  0
 25 26  1  0
 26 27  2  0
 17  2  1  0
 27 18  1  0
 16  7  1  0
 27 21  1  0
 16 10  1  0
  3 28  1  0
  6 29  1  6
  8 30  1  0
  9 31  1  0
 11 32  1  0
 13 33  1  0
 14 34  1  0
 15 35  1  0
 17 36  1  6
 19 37  1  0
 20 38  1  0
 22 39  1  0
 24 40  1  0
 25 41  1  0
 26 42  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₀H₁₅N₃O₄

Average Mass

361.3570 Da

Monoisotopic Mass

361.10626 Da

IUPAC Name

(3S,4S)-3,4-bis(6-hydroxy-1H-indol-3-yl)pyrrolidine-2,5-dione

Traditional Name

(3S,4S)-3,4-bis(6-hydroxy-1H-indol-3-yl)pyrrolidine-2,5-dione

CAS Registry Number

Not Available

SMILES

OC1=CC2=C(C=C1)C(=CN2)C1C(C(=O)NC1=O)C1=CNC2=C1C=CC(O)=C2

InChI Identifier

InChI=1S/C20H15N3O4/c24-9-1-3-11-13(7-21-15(11)5-9)17-18(20(27)23-19(17)26)14-8-22-16-6-10(25)2-4-12(14)16/h1-8,17-18,21-22,24-25H,(H,23,26,27)

InChI Key

MDOQJLLAKJRIGD-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Arcyria ferruginea	NPAtlas	14611848

Chemical Taxonomy

Description

This compound belongs to the class of organic compounds known as hydroxyindoles. These are organic compounds containing an indole moiety that carries a hydroxyl group.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Hydroxyindoles

Direct Parent

Hydroxyindoles

Alternative Parents

Substituents

Hydroxyindole
3-alkylindole
Indole
1-hydroxy-2-unsubstituted benzenoid
Benzenoid
Substituted pyrrole
Heteroaromatic compound
Pyrroline
Pyrrole
Lactim
N-acylimine
Azacycle
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Carboxylic acid derivative
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Carbonyl group
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.03	ALOGPS
logP	1.95	ChemAxon
logS	-3.7	ALOGPS
pKa (Strongest Acidic)	9.1	ChemAxon
pKa (Strongest Basic)	-5.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	118.21 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	97.76 m³·mol⁻¹	ChemAxon
Polarizability	37.38 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA002985

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78434652

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

74081285

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Nakatani S, Naoe A, Yamamoto Y, Yamauchi T, Yamaguchi N, Ishibashi M: Isolation of bisindole alkaloids that inhibit the cell cycle from Myxomycetes Arcyria ferruginea and Tubifera casparyi. Bioorg Med Chem Lett. 2003 Sep 1;13(17):2879-81. doi: 10.1016/s0960-894x(03)00592-4. [PubMed:14611848 ]

Showing NP-Card for Dihydroarcyriarubin C (NP0004981)

MOL for NP0004981 (Dihydroarcyriarubin C)

3D MOL for NP0004981 (Dihydroarcyriarubin C)

3D SDF for NP0004981 (Dihydroarcyriarubin C)

3D-SDF for NP0004981 (Dihydroarcyriarubin C)

PDB for NP0004981 (Dihydroarcyriarubin C)

3D PDB for NP0004981 (Dihydroarcyriarubin C)

SMILES for NP0004981 (Dihydroarcyriarubin C)

INCHI for NP0004981 (Dihydroarcyriarubin C)

Structure for NP0004981 (Dihydroarcyriarubin C)

3D Structure for NP0004981 (Dihydroarcyriarubin C)