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Record Information
Version2.0
Created at2020-12-09 02:07:57 UTC
Updated at2021-07-15 16:49:55 UTC
NP-MRD IDNP0004706
Secondary Accession NumbersNone
Natural Product Identification
Common NameGlycinocin A
Provided ByNPAtlasNPAtlas Logo
Description Glycinocin A is found in Actinomyces sp. and Actinomycete sp.. Glycinocin A was first documented in 2003 (PMID: 12931866). Based on a literature review very few articles have been published on (3S)-3-{[(3S,7S,13S,16R,22S,28S)-13-(butan-2-yl)-22,28-bis(carboxymethyl)-6,15,18,21,24,27,30,33-octahydroxy-16-(1-hydroxyethyl)-2,12-dioxo-1,5,11,14,17,20,23,26,29,32-decaazatricyclo[32.4.0.0⁷,¹¹]Octatriaconta-5,14,17,20,23,26,29,32-octaen-3-yl]-C-hydroxycarbonimidoyl}-3-{[(2E)-1-hydroxy-13-methyltetradec-2-en-1-ylidene]amino}propanoic acid.
Structure
Thumb
Synonyms
ValueSource
(3S)-3-{[(3S,7S,13S,16R,22S,28S)-13-(butan-2-yl)-22,28-bis(carboxymethyl)-6,15,18,21,24,27,30,33-octahydroxy-16-(1-hydroxyethyl)-2,12-dioxo-1,5,11,14,17,20,23,26,29,32-decaazatricyclo[32.4.0.0,]octatriaconta-5,14,17,20,23,26,29,32-octaen-3-yl]-C-hydroxycarbonimidoyl}-3-{[(2E)-1-hydroxy-13-methyltetradec-2-en-1-ylidene]amino}propanoateGenerator
Chemical FormulaC57H90N12O19
Average Mass1247.4120 Da
Monoisotopic Mass1246.64452 Da
IUPAC Name(3S)-3-{[(3S,7S,13S,16R,22S,28S,34R)-13-[(2S)-butan-2-yl]-22,28-bis(carboxymethyl)-16-[(1R)-1-hydroxyethyl]-2,6,12,15,18,21,24,27,30,33-decaoxo-1,5,11,14,17,20,23,26,29,32-decaazatricyclo[32.4.0.0^{7,11}]octatriacontan-3-yl]carbamoyl}-3-[(2E)-13-methyltetradec-2-enamido]propanoic acid
Traditional Name(3S)-3-{[(3S,7S,13S,16R,22S,28S,34R)-13-[(2S)-butan-2-yl]-22,28-bis(carboxymethyl)-16-[(1R)-1-hydroxyethyl]-2,6,12,15,18,21,24,27,30,33-decaoxo-1,5,11,14,17,20,23,26,29,32-decaazatricyclo[32.4.0.0^{7,11}]octatriacontan-3-yl]carbamoyl}-3-[(2E)-13-methyltetradec-2-enamido]propanoic acid
CAS Registry NumberNot Available
SMILES
CCC(C)[C@@H]1NC(=O)[C@H](NC(=O)CNC(=O)[C@H](CC(O)=O)NC(=O)CNC(=O)[C@H](CC(O)=O)NC(=O)CNC(=O)C2CCCCN2C(=O)[C@H](CNC(=O)[C@@H]2CCCN2C1=O)NC(=O)[C@H](CC(O)=O)NC(=O)\C=C\CCCCCCCCCC(C)C)C(C)O
InChI Identifier
InChI=1S/C57H90N12O19/c1-6-33(4)48-57(88)69-24-18-21-40(69)53(84)58-28-38(65-52(83)37(27-47(79)80)62-41(71)22-15-13-11-9-7-8-10-12-14-19-32(2)3)56(87)68-23-17-16-20-39(68)54(85)61-30-43(73)64-35(25-45(75)76)50(81)59-29-42(72)63-36(26-46(77)78)51(82)60-31-44(74)66-49(34(5)70)55(86)67-48/h15,22,32-40,48-49,70H,6-14,16-21,23-31H2,1-5H3,(H,58,84)(H,59,81)(H,60,82)(H,61,85)(H,62,71)(H,63,72)(H,64,73)(H,65,83)(H,66,74)(H,67,86)(H,75,76)(H,77,78)(H,79,80)/b22-15+/t33?,34?,35-,36-,37-,38-,39?,40-,48-,49+/m0/s1
InChI KeyJHAQMJWHVDTRJM-QCOCLPGKSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Actinomyces sp.NPAtlas
Actinomycete sp.-
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.77ALOGPS
logP-3.3ChemAxon
logS-4.7ALOGPS
pKa (Strongest Acidic)3.39ChemAxon
Physiological Charge-3ChemAxon
Hydrogen Acceptor Count19ChemAxon
Hydrogen Donor Count14ChemAxon
Polar Surface Area463.75 ŲChemAxon
Rotatable Bond Count23ChemAxon
Refractivity307.96 m³·mol⁻¹ChemAxon
Polarizability131.31 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA001403
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78445486
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139583480
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Kong F, Carter GT: Structure determination of glycinocins A to D, further evidence for the cyclic structure of the amphomycin antibiotics. J Antibiot (Tokyo). 2003 Jun;56(6):557-64. doi: 10.7164/antibiotics.56.557. [PubMed:12931866 ]