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Record Information
Version2.0
Created at2020-12-09 02:02:11 UTC
Updated at2021-07-15 16:49:35 UTC
NP-MRD IDNP0004583
Secondary Accession NumbersNone
Natural Product Identification
Common NameYatakemycin
Provided ByNPAtlasNPAtlas Logo
Description4-[7-(Acetylsulfanyl)-4-hydroxy-5-methoxy-1H,2H,3H,6H-pyrrolo[3,2-e]indole-3-carbonyl]-10-(6-hydroxy-5-methoxy-1H-indole-2-carbonyl)-5,10-diazatetracyclo[7.4.0.0¹,¹².0²,⁶]Trideca-2(6),3,8-trien-7-one belongs to the class of organic compounds known as pyrroloindoles. Pyrroloindoles are compounds containing a pyrroloindole moiety, which is a tricyclic heterocycle which consists of a pyrrole ring fused to an indole. Pyrrole is 5-membered ring consisting of four carbon atoms and one nitrogen atom. Indole is a bicyclic compound consisting of a six-membered benzene ring fused to a five-membered nitrogen-containing pyrrole ring. Yatakemycin is found in Streptomyces sp. TP-A0356. Yatakemycin was first documented in 2003 (PMID: 12715869). Based on a literature review very few articles have been published on 4-[7-(acetylsulfanyl)-4-hydroxy-5-methoxy-1H,2H,3H,6H-pyrrolo[3,2-e]indole-3-carbonyl]-10-(6-hydroxy-5-methoxy-1H-indole-2-carbonyl)-5,10-diazatetracyclo[7.4.0.0¹,¹².0²,⁶]Trideca-2(6),3,8-trien-7-one.
Structure
Thumb
Synonyms
ValueSource
4-[7-(Acetylsulphanyl)-4-hydroxy-5-methoxy-1H,2H,3H,6H-pyrrolo[3,2-e]indole-3-carbonyl]-10-(6-hydroxy-5-methoxy-1H-indole-2-carbonyl)-5,10-diazatetracyclo[7.4.0.0,.0,]trideca-2(6),3,8-trien-7-oneGenerator
Chemical FormulaC35H29N5O8S
Average Mass679.7000 Da
Monoisotopic Mass679.17368 Da
IUPAC Name(1S,12R)-4-[7-(acetylsulfanyl)-4-hydroxy-5-methoxy-1H,2H,3H,6H-pyrrolo[3,2-e]indole-3-carbonyl]-10-(6-hydroxy-5-methoxy-1H-indole-2-carbonyl)-5,10-diazatetracyclo[7.4.0.0^{1,12}.0^{2,6}]trideca-2(6),3,8-trien-7-one
Traditional Name(1S,12R)-4-[7-(acetylsulfanyl)-4-hydroxy-5-methoxy-1H,2H,6H-pyrrolo[3,2-e]indole-3-carbonyl]-10-(6-hydroxy-5-methoxy-1H-indole-2-carbonyl)-5,10-diazatetracyclo[7.4.0.0^{1,12}.0^{2,6}]trideca-2(6),3,8-trien-7-one
CAS Registry NumberNot Available
SMILES
COC1=C(O)C=C2NC(=CC2=C1)C(=O)N1CC2CC22C3=C(NC(=C3)C(=O)N3CCC4=C5C=C(NC5=C(OC)C(O)=C34)SC(C)=O)C(=O)C=C12
InChI Identifier
InChI=1S/C35H29N5O8S/c1-14(41)49-27-8-18-17-4-5-39(30(17)31(44)32(48-3)28(18)38-27)33(45)22-9-19-29(37-22)24(43)11-26-35(19)12-16(35)13-40(26)34(46)21-6-15-7-25(47-2)23(42)10-20(15)36-21/h6-11,16,36-38,42,44H,4-5,12-13H2,1-3H3
InChI KeyCJTUMLYXLYEBOO-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces sp. TP-A0356NPAtlas
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pyrroloindoles. Pyrroloindoles are compounds containing a pyrroloindole moiety, which is a tricyclic heterocycle which consists of a pyrrole ring fused to an indole. Pyrrole is 5-membered ring consisting of four carbon atoms and one nitrogen atom. Indole is a bicyclic compound consisting of a six-membered benzene ring fused to a five-membered nitrogen-containing pyrrole ring.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassIndoles and derivatives
Sub ClassPyrroloindoles
Direct ParentPyrroloindoles
Alternative Parents
Substituents
  • Pyrroloindole
  • Indolecarboxylic acid derivative
  • Indolecarboxamide derivative
  • Hydroxyindole
  • N-acyl-piperidine
  • Indole
  • Pyrrole-2-carboxamide
  • Pyrrole-2-carboxylic acid or derivatives
  • 2-heteroaryl carboxamide
  • Phenol ether
  • N-acylpyrrolidine
  • Aryl ketone
  • Aryl thioether
  • Anisole
  • Phenol
  • Alkyl aryl ether
  • 1-hydroxy-2-unsubstituted benzenoid
  • Benzenoid
  • Piperidine
  • Substituted pyrrole
  • Pyrrolidine
  • Pyrrole
  • Vinylogous amide
  • Heteroaromatic compound
  • Tertiary carboxylic acid amide
  • Carboxamide group
  • Ketone
  • Carbothioic s-ester
  • Thiocarboxylic acid ester
  • Sulfenyl compound
  • Azacycle
  • Ether
  • Carboxylic acid derivative
  • Thiocarboxylic acid or derivatives
  • Organonitrogen compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organic nitrogen compound
  • Organooxygen compound
  • Organosulfur compound
  • Carbonyl group
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP4.18ALOGPS
logP1.72ChemAxon
logS-4.2ALOGPS
pKa (Strongest Acidic)8.24ChemAxon
pKa (Strongest Basic)-3.4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count5ChemAxon
Polar Surface Area181.05 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity181.58 m³·mol⁻¹ChemAxon
Polarizability73.93 ųChemAxon
Number of Rings9ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA001250
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID8253809
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound10078271
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Igarashi Y, Futamata K, Fujita T, Sekine A, Senda H, Naoki H, Furumai T: Yatakemycin, a novel antifungal antibiotic produced by Streptomyces sp. TP-A0356. J Antibiot (Tokyo). 2003 Feb;56(2):107-13. doi: 10.7164/antibiotics.56.107. [PubMed:12715869 ]