| Record Information |
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| Version | 2.0 |
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| Created at | 2020-12-09 02:02:11 UTC |
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| Updated at | 2021-07-15 16:49:35 UTC |
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| NP-MRD ID | NP0004583 |
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| Secondary Accession Numbers | None |
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| Natural Product Identification |
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| Common Name | Yatakemycin |
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| Provided By | NPAtlas |
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| Description | 4-[7-(Acetylsulfanyl)-4-hydroxy-5-methoxy-1H,2H,3H,6H-pyrrolo[3,2-e]indole-3-carbonyl]-10-(6-hydroxy-5-methoxy-1H-indole-2-carbonyl)-5,10-diazatetracyclo[7.4.0.0¹,¹².0²,⁶]Trideca-2(6),3,8-trien-7-one belongs to the class of organic compounds known as pyrroloindoles. Pyrroloindoles are compounds containing a pyrroloindole moiety, which is a tricyclic heterocycle which consists of a pyrrole ring fused to an indole. Pyrrole is 5-membered ring consisting of four carbon atoms and one nitrogen atom. Indole is a bicyclic compound consisting of a six-membered benzene ring fused to a five-membered nitrogen-containing pyrrole ring. Yatakemycin is found in Streptomyces sp. TP-A0356. Yatakemycin was first documented in 2003 (PMID: 12715869). Based on a literature review very few articles have been published on 4-[7-(acetylsulfanyl)-4-hydroxy-5-methoxy-1H,2H,3H,6H-pyrrolo[3,2-e]indole-3-carbonyl]-10-(6-hydroxy-5-methoxy-1H-indole-2-carbonyl)-5,10-diazatetracyclo[7.4.0.0¹,¹².0²,⁶]Trideca-2(6),3,8-trien-7-one. |
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| Structure | [H]OC1=C([H])C2=C(C([H])=C(N2[H])C(=O)N2C3=C([H])C(=O)C4=C(C([H])=C(N4[H])C(=O)N4C5=C(C6=C(N([H])C(SC(=O)C([H])([H])[H])=C6[H])C(OC([H])([H])[H])=C5O[H])C([H])([H])C4([H])[H])[C@@]33C([H])([H])[C@@]3([H])C2([H])[H])C([H])=C1OC([H])([H])[H] InChI=1S/C35H29N5O8S/c1-14(41)49-27-8-18-17-4-5-39(30(17)31(44)32(48-3)28(18)38-27)33(45)22-9-19-29(37-22)24(43)11-26-35(19)12-16(35)13-40(26)34(46)21-6-15-7-25(47-2)23(42)10-20(15)36-21/h6-11,16,36-38,42,44H,4-5,12-13H2,1-3H3/t16-,35-/m0/s1 |
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| Synonyms | | Value | Source |
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| 4-[7-(Acetylsulphanyl)-4-hydroxy-5-methoxy-1H,2H,3H,6H-pyrrolo[3,2-e]indole-3-carbonyl]-10-(6-hydroxy-5-methoxy-1H-indole-2-carbonyl)-5,10-diazatetracyclo[7.4.0.0,.0,]trideca-2(6),3,8-trien-7-one | Generator |
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| Chemical Formula | C35H29N5O8S |
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| Average Mass | 679.7000 Da |
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| Monoisotopic Mass | 679.17368 Da |
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| IUPAC Name | (1S,12R)-4-[7-(acetylsulfanyl)-4-hydroxy-5-methoxy-1H,2H,3H,6H-pyrrolo[3,2-e]indole-3-carbonyl]-10-(6-hydroxy-5-methoxy-1H-indole-2-carbonyl)-5,10-diazatetracyclo[7.4.0.0^{1,12}.0^{2,6}]trideca-2(6),3,8-trien-7-one |
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| Traditional Name | (1S,12R)-4-[7-(acetylsulfanyl)-4-hydroxy-5-methoxy-1H,2H,6H-pyrrolo[3,2-e]indole-3-carbonyl]-10-(6-hydroxy-5-methoxy-1H-indole-2-carbonyl)-5,10-diazatetracyclo[7.4.0.0^{1,12}.0^{2,6}]trideca-2(6),3,8-trien-7-one |
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| CAS Registry Number | Not Available |
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| SMILES | COC1=C(O)C=C2NC(=CC2=C1)C(=O)N1CC2CC22C3=C(NC(=C3)C(=O)N3CCC4=C5C=C(NC5=C(OC)C(O)=C34)SC(C)=O)C(=O)C=C12 |
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| InChI Identifier | InChI=1S/C35H29N5O8S/c1-14(41)49-27-8-18-17-4-5-39(30(17)31(44)32(48-3)28(18)38-27)33(45)22-9-19-29(37-22)24(43)11-26-35(19)12-16(35)13-40(26)34(46)21-6-15-7-25(47-2)23(42)10-20(15)36-21/h6-11,16,36-38,42,44H,4-5,12-13H2,1-3H3 |
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| InChI Key | CJTUMLYXLYEBOO-UHFFFAOYSA-N |
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| Experimental Spectra |
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| Not Available | | Predicted Spectra |
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| | Spectrum Type | Description | Depositor ID | Depositor Organization | Depositor | Deposition Date | View |
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| 1D NMR | 13C NMR Spectrum (1D, 25 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 100 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 252 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 50 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 200 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 75 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 300 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 101 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 400 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 126 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 500 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 151 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 600 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 176 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 700 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 201 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 800 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 226 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 900 MHz, D2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum |
| | Chemical Shift Submissions |
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| Not Available | | Species |
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| Species of Origin | |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as pyrroloindoles. Pyrroloindoles are compounds containing a pyrroloindole moiety, which is a tricyclic heterocycle which consists of a pyrrole ring fused to an indole. Pyrrole is 5-membered ring consisting of four carbon atoms and one nitrogen atom. Indole is a bicyclic compound consisting of a six-membered benzene ring fused to a five-membered nitrogen-containing pyrrole ring. |
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| Kingdom | Organic compounds |
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| Super Class | Organoheterocyclic compounds |
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| Class | Indoles and derivatives |
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| Sub Class | Pyrroloindoles |
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| Direct Parent | Pyrroloindoles |
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| Alternative Parents | |
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| Substituents | - Pyrroloindole
- Indolecarboxylic acid derivative
- Indolecarboxamide derivative
- Hydroxyindole
- N-acyl-piperidine
- Indole
- Pyrrole-2-carboxamide
- Pyrrole-2-carboxylic acid or derivatives
- 2-heteroaryl carboxamide
- Phenol ether
- N-acylpyrrolidine
- Aryl ketone
- Aryl thioether
- Anisole
- Phenol
- Alkyl aryl ether
- 1-hydroxy-2-unsubstituted benzenoid
- Benzenoid
- Piperidine
- Substituted pyrrole
- Pyrrolidine
- Pyrrole
- Vinylogous amide
- Heteroaromatic compound
- Tertiary carboxylic acid amide
- Carboxamide group
- Ketone
- Carbothioic s-ester
- Thiocarboxylic acid ester
- Sulfenyl compound
- Azacycle
- Ether
- Carboxylic acid derivative
- Thiocarboxylic acid or derivatives
- Organonitrogen compound
- Organic oxygen compound
- Hydrocarbon derivative
- Organic oxide
- Organic nitrogen compound
- Organooxygen compound
- Organosulfur compound
- Carbonyl group
- Aromatic heteropolycyclic compound
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| Molecular Framework | Aromatic heteropolycyclic compounds |
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| External Descriptors | Not Available |
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| Physical Properties |
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| State | Not Available |
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| Experimental Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Predicted Properties | |
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