NP-MRD: Showing NP-Card for Glomecidin (NP0004567)

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Record Information

Version

2.0

Created at

2020-12-09 02:01:36 UTC

Updated at

2021-07-15 16:49:32 UTC

NP-MRD ID

NP0004567

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Glomecidin

Provided By

NPAtlas

Description

Glomecidin is found in Streptomyces lavendulae. Glomecidin was first documented in 2003 (PMID: 12670047). Based on a literature review very few articles have been published on (7S,10R,13R)-10-[(2R)-butan-2-yl]-3,4,5,8,11-pentahydroxy-13-[(1H-imidazol-5-yl)methyl]-7-[(4-methoxyphenyl)methyl]-1H,2H,3H,4H,4aH,7H,10H,13H,14H-pyridazino[1,6-a]1,4,7,10-tetraazacyclododecan-14-one.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652307012117533D          

 78 81  0  0  0  0            999 V2000
   -2.1103    5.6724    0.3756 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3846    4.3517    0.6859 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.5979    3.4747   -0.5002 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9919    4.2111   -1.7040 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8565    2.1478   -0.4394 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5619    2.4023   -0.3423 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5715    1.4081   -0.3843 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5688    1.5688   -1.1716 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5843    0.1663    0.4169 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6247    0.1334    1.4949 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9558    0.2613    0.8992 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5519    1.4852    0.7158 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8130    1.6145    0.1577 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4815    0.4699   -0.2221 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7396    0.5465   -0.7823 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.4048   -0.6404   -1.1630 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8684   -0.7612   -0.0315 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6210   -0.8829    0.5211 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7504   -0.9502   -0.5088 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.1824   -2.2342   -0.3366 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9876   -3.2069   -0.5550 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2461   -2.4746    0.0676 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3703   -3.8772    0.5612 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6933   -4.7137    0.1755 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6377   -4.5886    0.2193 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.6327   -4.4236    1.1864 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1139   -4.3510   -1.1854 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1956   -3.4654   -1.9007 N   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1289   -2.2986   -1.0706 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8633   -1.1411   -1.4017 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6928   -0.7400   -2.6095 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7736   -0.3530   -0.5779 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.0028   -1.1329   -0.1663 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.9617   -0.3467    0.6486 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9304    0.9572    1.0255 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0270    1.2239    1.7736 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7460    0.1009    1.8696 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1067   -0.8549    1.1905 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1628    0.1968    0.6159 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3970    1.3664    0.7060 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1242    1.8243    1.8458 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.6039    6.2178   -0.4479 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0508    6.3289    1.2735 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8978    3.9868    1.6089 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.6807    3.3325   -0.6455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0958    4.7708   -1.3725 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6740    3.4655   -2.4547 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7457    4.8730   -2.1769 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1175    1.6570   -1.4123 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8825    3.3904   -0.2340 H   0  0  0  0  0  0  0  0  0  0  0  0
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    2.3836    0.9748    2.2033 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0397    2.3911    1.0082 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3055    2.5646    0.0019 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5780   -1.2436   -0.2357 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7140   -1.2202   -1.8030 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3392   -0.4050   -1.6942 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3683   -1.6822   -0.3189 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1652   -1.8699    0.6569 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3475   -0.7512   -1.3634 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4580   -1.7197    0.8709 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3200   -3.8404    1.6798 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3866   -5.5781   -0.1486 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4101   -5.6990    0.2653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2843   -4.8518    2.0286 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0977   -3.8410   -1.1289 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2927   -5.2867   -1.7554 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2550   -3.9006   -2.0025 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1601    0.5316   -1.1362 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7196   -2.0832    0.3531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5432   -1.3914   -1.1239 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2020    1.6958    0.8007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6751    0.0052    2.4062 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4218   -1.8511    1.0793 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3227   -0.3558    1.4861 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 14 17  1  0  0  0  0
 17 18  2  0  0  0  0
  9 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  2  0  0  0  0
 35 36  1  0  0  0  0
 36 37  2  0  0  0  0
 37 38  1  0  0  0  0
 32 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  2  0  0  0  0
 40  5  1  0  0  0  0
 18 11  1  0  0  0  0
 29 22  1  0  0  0  0
 38 34  1  0  0  0  0
  1 42  1  0  0  0  0
  1 43  1  0  0  0  0
  1 44  1  0  0  0  0
  2 45  1  0  0  0  0
  2 46  1  0  0  0  0
  3 47  1  6  0  0  0
  4 48  1  0  0  0  0
  4 49  1  0  0  0  0
  4 50  1  0  0  0  0
  5 51  1  6  0  0  0
  6 52  1  0  0  0  0
  9 53  1  1  0  0  0
 10 54  1  0  0  0  0
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 12 56  1  0  0  0  0
 13 57  1  0  0  0  0
 16 58  1  0  0  0  0
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 37 76  1  0  0  0  0
 38 77  1  0  0  0  0
 39 78  1  0  0  0  0
M  END

     RDKit          3D

 78 81  0  0  0  0  0  0  0  0999 V2000
   -2.1103    5.6724    0.3756 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3846    4.3517    0.6859 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5979    3.4747   -0.5002 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9919    4.2111   -1.7040 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8565    2.1478   -0.4394 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5619    2.4023   -0.3423 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5715    1.4081   -0.3843 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5688    1.5688   -1.1716 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5843    0.1663    0.4169 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6247    0.1334    1.4949 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9558    0.2613    0.8992 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5519    1.4852    0.7158 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8130    1.6145    0.1577 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4815    0.4699   -0.2221 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7396    0.5465   -0.7823 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.4048   -0.6404   -1.1630 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8684   -0.7612   -0.0315 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6210   -0.8829    0.5211 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7504   -0.9502   -0.5088 N   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.9617   -0.3467    0.6486 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9304    0.9572    1.0255 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0270    1.2239    1.7736 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7460    0.1009    1.8696 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1067   -0.8549    1.1905 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1628    0.1968    0.6159 N   0  0  0  0  0  0  0  0  0  0  0  0
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    6.3683   -1.6822   -0.3189 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1652   -1.8699    0.6569 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3475   -0.7512   -1.3634 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4580   -1.7197    0.8709 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.3866   -5.5781   -0.1486 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4101   -5.6990    0.2653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2843   -4.8518    2.0286 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0977   -3.8410   -1.1289 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2927   -5.2867   -1.7554 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2550   -3.9006   -2.0025 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1601    0.5316   -1.1362 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7196   -2.0832    0.3531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5432   -1.3914   -1.1239 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2020    1.6958    0.8007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6751    0.0052    2.4062 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4218   -1.8511    1.0793 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3227   -0.3558    1.4861 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  0
 14 17  1  0
 17 18  2  0
  9 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  1  0
 23 24  1  0
 23 25  1  0
 25 26  1  0
 25 27  1  0
 27 28  1  0
 28 29  1  0
 29 30  1  0
 30 31  2  0
 30 32  1  0
 32 33  1  0
 33 34  1  0
 34 35  2  0
 35 36  1  0
 36 37  2  0
 37 38  1  0
 32 39  1  0
 39 40  1  0
 40 41  2  0
 40  5  1  0
 18 11  1  0
 29 22  1  0
 38 34  1  0
  1 42  1  0
  1 43  1  0
  1 44  1  0
  2 45  1  0
  2 46  1  0
  3 47  1  6
  4 48  1  0
  4 49  1  0
  4 50  1  0
  5 51  1  6
  6 52  1  0
  9 53  1  1
 10 54  1  0
 10 55  1  0
 12 56  1  0
 13 57  1  0
 16 58  1  0
 16 59  1  0
 16 60  1  0
 17 61  1  0
 18 62  1  0
 19 63  1  0
 22 64  1  1
 23 65  1  1
 24 66  1  0
 25 67  1  6
 26 68  1  0
 27 69  1  0
 27 70  1  0
 28 71  1  0
 32 72  1  6
 33 73  1  0
 33 74  1  0
 35 75  1  0
 37 76  1  0
 38 77  1  0
 39 78  1  0
M  END


  Mrv1652307012117533D          

 78 81  0  0  0  0            999 V2000
   -2.1103    5.6724    0.3756 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3846    4.3517    0.6859 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.5979    3.4747   -0.5002 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9919    4.2111   -1.7040 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8565    2.1478   -0.4394 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5619    2.4023   -0.3423 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5715    1.4081   -0.3843 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5688    1.5688   -1.1716 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5843    0.1663    0.4169 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6247    0.1334    1.4949 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9558    0.2613    0.8992 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5519    1.4852    0.7158 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8130    1.6145    0.1577 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4815    0.4699   -0.2221 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7396    0.5465   -0.7823 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.4048   -0.6404   -1.1630 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8684   -0.7612   -0.0315 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6210   -0.8829    0.5211 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7504   -0.9502   -0.5088 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.1824   -2.2342   -0.3366 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9876   -3.2069   -0.5550 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2461   -2.4746    0.0676 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3703   -3.8772    0.5612 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6933   -4.7137    0.1755 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6377   -4.5886    0.2193 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.6327   -4.4236    1.1864 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1139   -4.3510   -1.1854 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1956   -3.4654   -1.9007 N   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1289   -2.2986   -1.0706 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8633   -1.1411   -1.4017 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6928   -0.7400   -2.6095 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7736   -0.3530   -0.5779 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.0028   -1.1329   -0.1663 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.9617   -0.3467    0.6486 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9304    0.9572    1.0255 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0270    1.2239    1.7736 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7460    0.1009    1.8696 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1067   -0.8549    1.1905 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1628    0.1968    0.6159 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3970    1.3664    0.7060 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1242    1.8243    1.8458 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1668    5.5075    0.1632 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6039    6.2178   -0.4479 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0508    6.3289    1.2735 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8978    3.9868    1.6089 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3461    4.5971    0.9105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6807    3.3325   -0.6455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0958    4.7708   -1.3725 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6740    3.4655   -2.4547 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7457    4.8730   -2.1769 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1175    1.6570   -1.4123 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8825    3.3904   -0.2340 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6126   -0.0282    0.9124 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5122   -0.8379    2.0236 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3836    0.9748    2.2033 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0397    2.3911    1.0082 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3055    2.5646    0.0019 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5780   -1.2436   -0.2357 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7140   -1.2202   -1.8030 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3392   -0.4050   -1.6942 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3683   -1.6822   -0.3189 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1652   -1.8699    0.6569 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3475   -0.7512   -1.3634 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4580   -1.7197    0.8709 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3200   -3.8404    1.6798 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3866   -5.5781   -0.1486 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4101   -5.6990    0.2653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2843   -4.8518    2.0286 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0977   -3.8410   -1.1289 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2927   -5.2867   -1.7554 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2550   -3.9006   -2.0025 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1601    0.5316   -1.1362 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7196   -2.0832    0.3531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5432   -1.3914   -1.1239 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2020    1.6958    0.8007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6751    0.0052    2.4062 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4218   -1.8511    1.0793 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3227   -0.3558    1.4861 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 14 17  1  0  0  0  0
 17 18  2  0  0  0  0
  9 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  2  0  0  0  0
 35 36  1  0  0  0  0
 36 37  2  0  0  0  0
 37 38  1  0  0  0  0
 32 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  2  0  0  0  0
 40  5  1  0  0  0  0
 18 11  1  0  0  0  0
 29 22  1  0  0  0  0
 38 34  1  0  0  0  0
  1 42  1  0  0  0  0
  1 43  1  0  0  0  0
  1 44  1  0  0  0  0
  2 45  1  0  0  0  0
  2 46  1  0  0  0  0
  3 47  1  6  0  0  0
  4 48  1  0  0  0  0
  4 49  1  0  0  0  0
  4 50  1  0  0  0  0
  5 51  1  6  0  0  0
  6 52  1  0  0  0  0
  9 53  1  1  0  0  0
 10 54  1  0  0  0  0
 10 55  1  0  0  0  0
 12 56  1  0  0  0  0
 13 57  1  0  0  0  0
 16 58  1  0  0  0  0
 16 59  1  0  0  0  0
 16 60  1  0  0  0  0
 17 61  1  0  0  0  0
 18 62  1  0  0  0  0
 19 63  1  0  0  0  0
 22 64  1  1  0  0  0
 23 65  1  1  0  0  0
 24 66  1  0  0  0  0
 25 67  1  6  0  0  0
 26 68  1  0  0  0  0
 27 69  1  0  0  0  0
 27 70  1  0  0  0  0
 28 71  1  0  0  0  0
 32 72  1  6  0  0  0
 33 73  1  0  0  0  0
 33 74  1  0  0  0  0
 35 75  1  0  0  0  0
 37 76  1  0  0  0  0
 38 77  1  0  0  0  0
 39 78  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0004567

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@@]1([H])C([H])([H])N([H])N2C(=O)[C@]([H])(N([H])C(=O)[C@]([H])(N([H])C(=O)[C@@]([H])(N([H])C(=O)[C@]2([H])[C@]1([H])O[H])C([H])([H])C1=C([H])C([H])=C(OC([H])([H])[H])C([H])=C1[H])[C@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])[H])C([H])([H])C1=C([H])N=C([H])N1[H]

> <INCHI_IDENTIFIER>
InChI=1S/C27H37N7O7/c1-4-14(2)21-25(38)32-19(10-16-11-28-13-29-16)27(40)34-22(23(36)20(35)12-30-34)26(39)31-18(24(37)33-21)9-15-5-7-17(41-3)8-6-15/h5-8,11,13-14,18-23,30,35-36H,4,9-10,12H2,1-3H3,(H,28,29)(H,31,39)(H,32,38)(H,33,37)/t14-,18+,19-,20+,21-,22+,23-/m1/s1

> <INCHI_KEY>
NNIBMMQVFDWAAF-ABHIBMEJSA-N

> <FORMULA>
C27H37N7O7

> <MOLECULAR_WEIGHT>
571.635

> <EXACT_MASS>
571.275446559

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
78

> <JCHEM_AVERAGE_POLARIZABILITY>
58.76309189391399

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3S,4S,4aS,7S,10R,13R)-10-[(2R)-butan-2-yl]-3,4-dihydroxy-13-[(1H-imidazol-5-yl)methyl]-7-[(4-methoxyphenyl)methyl]-tetradecahydro-1H-pyridazino[1,6-a]1,4,7,10-tetraazacyclododecane-5,8,11,14-tetrone

> <ALOGPS_LOGP>
-0.34

> <JCHEM_LOGP>
-1.9480034080000017

> <ALOGPS_LOGS>
-2.70

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
10.998987979166843

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.44926336464625

> <JCHEM_PKA_STRONGEST_BASIC>
6.7430038454738055

> <JCHEM_POLAR_SURFACE_AREA>
198.01

> <JCHEM_REFRACTIVITY>
155.44910000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.13e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3S,4S,4aS,7S,10R,13R)-10-[(2R)-butan-2-yl]-3,4-dihydroxy-13-(3H-imidazol-4-ylmethyl)-7-[(4-methoxyphenyl)methyl]-decahydro-1H-pyridazino[1,6-a]1,4,7,10-tetraazacyclododecane-5,8,11,14-tetrone

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 78 81  0  0  0  0  0  0  0  0999 V2000
   -2.1103    5.6724    0.3756 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3846    4.3517    0.6859 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5979    3.4747   -0.5002 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9919    4.2111   -1.7040 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8565    2.1478   -0.4394 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5619    2.4023   -0.3423 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5715    1.4081   -0.3843 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5688    1.5688   -1.1716 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5843    0.1663    0.4169 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6247    0.1334    1.4949 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9558    0.2613    0.8992 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5519    1.4852    0.7158 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8130    1.6145    0.1577 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4815    0.4699   -0.2221 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7396    0.5465   -0.7823 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.4048   -0.6404   -1.1630 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8684   -0.7612   -0.0315 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6210   -0.8829    0.5211 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7504   -0.9502   -0.5088 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.1824   -2.2342   -0.3366 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9876   -3.2069   -0.5550 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2461   -2.4746    0.0676 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3703   -3.8772    0.5612 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6933   -4.7137    0.1755 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6377   -4.5886    0.2193 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.6327   -4.4236    1.1864 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1139   -4.3510   -1.1854 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1956   -3.4654   -1.9007 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1289   -2.2986   -1.0706 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8633   -1.1411   -1.4017 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6928   -0.7400   -2.6095 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7736   -0.3530   -0.5779 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.0028   -1.1329   -0.1663 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9617   -0.3467    0.6486 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9304    0.9572    1.0255 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0270    1.2239    1.7736 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7460    0.1009    1.8696 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1067   -0.8549    1.1905 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1628    0.1968    0.6159 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3970    1.3664    0.7060 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1242    1.8243    1.8458 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1668    5.5075    0.1632 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6039    6.2178   -0.4479 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0508    6.3289    1.2735 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8978    3.9868    1.6089 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3461    4.5971    0.9105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6807    3.3325   -0.6455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0958    4.7708   -1.3725 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6740    3.4655   -2.4547 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7457    4.8730   -2.1769 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1175    1.6570   -1.4123 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8825    3.3904   -0.2340 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6126   -0.0282    0.9124 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5122   -0.8379    2.0236 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3836    0.9748    2.2033 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0397    2.3911    1.0082 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3055    2.5646    0.0019 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5780   -1.2436   -0.2357 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7140   -1.2202   -1.8030 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3392   -0.4050   -1.6942 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3683   -1.6822   -0.3189 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1652   -1.8699    0.6569 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3475   -0.7512   -1.3634 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4580   -1.7197    0.8709 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3200   -3.8404    1.6798 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3866   -5.5781   -0.1486 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4101   -5.6990    0.2653 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2843   -4.8518    2.0286 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0977   -3.8410   -1.1289 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2927   -5.2867   -1.7554 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2550   -3.9006   -2.0025 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1601    0.5316   -1.1362 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7196   -2.0832    0.3531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5432   -1.3914   -1.1239 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2020    1.6958    0.8007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6751    0.0052    2.4062 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4218   -1.8511    1.0793 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3227   -0.3558    1.4861 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  1  0
 14 17  1  0
 17 18  2  0
  9 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  1  0
 23 24  1  0
 23 25  1  0
 25 26  1  0
 25 27  1  0
 27 28  1  0
 28 29  1  0
 29 30  1  0
 30 31  2  0
 30 32  1  0
 32 33  1  0
 33 34  1  0
 34 35  2  0
 35 36  1  0
 36 37  2  0
 37 38  1  0
 32 39  1  0
 39 40  1  0
 40 41  2  0
 40  5  1  0
 18 11  1  0
 29 22  1  0
 38 34  1  0
  1 42  1  0
  1 43  1  0
  1 44  1  0
  2 45  1  0
  2 46  1  0
  3 47  1  6
  4 48  1  0
  4 49  1  0
  4 50  1  0
  5 51  1  6
  6 52  1  0
  9 53  1  1
 10 54  1  0
 10 55  1  0
 12 56  1  0
 13 57  1  0
 16 58  1  0
 16 59  1  0
 16 60  1  0
 17 61  1  0
 18 62  1  0
 19 63  1  0
 22 64  1  1
 23 65  1  1
 24 66  1  0
 25 67  1  6
 26 68  1  0
 27 69  1  0
 27 70  1  0
 28 71  1  0
 32 72  1  6
 33 73  1  0
 33 74  1  0
 35 75  1  0
 37 76  1  0
 38 77  1  0
 39 78  1  0
M  END

HEADER    PROTEIN                                 01-JUL-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   01-JUL-21         0                                  
HETATM    1  C   UNK     0      -2.110   5.672   0.376  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.385   4.352   0.686  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.598   3.475  -0.500  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.992   4.211  -1.704  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.857   2.148  -0.439  0.00  0.00           C+0
HETATM    6  N   UNK     0       0.562   2.402  -0.342  0.00  0.00           N+0
HETATM    7  C   UNK     0       1.571   1.408  -0.384  0.00  0.00           C+0
HETATM    8  O   UNK     0       2.569   1.569  -1.172  0.00  0.00           O+0
HETATM    9  C   UNK     0       1.584   0.166   0.417  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.625   0.133   1.495  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.956   0.261   0.899  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.552   1.485   0.716  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.813   1.615   0.158  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.481   0.470  -0.222  0.00  0.00           C+0
HETATM   15  O   UNK     0       7.740   0.547  -0.782  0.00  0.00           O+0
HETATM   16  C   UNK     0       8.405  -0.640  -1.163  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.868  -0.761  -0.032  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.621  -0.883   0.521  0.00  0.00           C+0
HETATM   19  N   UNK     0       1.750  -0.950  -0.509  0.00  0.00           N+0
HETATM   20  C   UNK     0       1.182  -2.234  -0.337  0.00  0.00           C+0
HETATM   21  O   UNK     0       1.988  -3.207  -0.555  0.00  0.00           O+0
HETATM   22  C   UNK     0      -0.246  -2.475   0.068  0.00  0.00           C+0
HETATM   23  C   UNK     0      -0.370  -3.877   0.561  0.00  0.00           C+0
HETATM   24  O   UNK     0       0.693  -4.714   0.176  0.00  0.00           O+0
HETATM   25  C   UNK     0      -1.638  -4.589   0.219  0.00  0.00           C+0
HETATM   26  O   UNK     0      -2.633  -4.424   1.186  0.00  0.00           O+0
HETATM   27  C   UNK     0      -2.114  -4.351  -1.185  0.00  0.00           C+0
HETATM   28  N   UNK     0      -1.196  -3.465  -1.901  0.00  0.00           N+0
HETATM   29  N   UNK     0      -1.129  -2.299  -1.071  0.00  0.00           N+0
HETATM   30  C   UNK     0      -1.863  -1.141  -1.402  0.00  0.00           C+0
HETATM   31  O   UNK     0      -1.693  -0.740  -2.610  0.00  0.00           O+0
HETATM   32  C   UNK     0      -2.774  -0.353  -0.578  0.00  0.00           C+0
HETATM   33  C   UNK     0      -4.003  -1.133  -0.166  0.00  0.00           C+0
HETATM   34  C   UNK     0      -4.962  -0.347   0.649  0.00  0.00           C+0
HETATM   35  C   UNK     0      -4.930   0.957   1.026  0.00  0.00           C+0
HETATM   36  N   UNK     0      -6.027   1.224   1.774  0.00  0.00           N+0
HETATM   37  C   UNK     0      -6.746   0.101   1.870  0.00  0.00           C+0
HETATM   38  N   UNK     0      -6.107  -0.855   1.190  0.00  0.00           N+0
HETATM   39  N   UNK     0      -2.163   0.197   0.616  0.00  0.00           N+0
HETATM   40  C   UNK     0      -1.397   1.366   0.706  0.00  0.00           C+0
HETATM   41  O   UNK     0      -1.124   1.824   1.846  0.00  0.00           O+0
HETATM   42  H   UNK     0      -3.167   5.508   0.163  0.00  0.00           H+0
HETATM   43  H   UNK     0      -1.604   6.218  -0.448  0.00  0.00           H+0
HETATM   44  H   UNK     0      -2.051   6.329   1.274  0.00  0.00           H+0
HETATM   45  H   UNK     0      -1.898   3.987   1.609  0.00  0.00           H+0
HETATM   46  H   UNK     0      -0.346   4.597   0.911  0.00  0.00           H+0
HETATM   47  H   UNK     0      -2.681   3.333  -0.646  0.00  0.00           H+0
HETATM   48  H   UNK     0      -0.096   4.771  -1.373  0.00  0.00           H+0
HETATM   49  H   UNK     0      -0.674   3.466  -2.455  0.00  0.00           H+0
HETATM   50  H   UNK     0      -1.746   4.873  -2.177  0.00  0.00           H+0
HETATM   51  H   UNK     0      -1.117   1.657  -1.412  0.00  0.00           H+0
HETATM   52  H   UNK     0       0.883   3.390  -0.234  0.00  0.00           H+0
HETATM   53  H   UNK     0       0.613  -0.028   0.912  0.00  0.00           H+0
HETATM   54  H   UNK     0       2.512  -0.838   2.024  0.00  0.00           H+0
HETATM   55  H   UNK     0       2.384   0.975   2.203  0.00  0.00           H+0
HETATM   56  H   UNK     0       4.040   2.391   1.008  0.00  0.00           H+0
HETATM   57  H   UNK     0       6.306   2.565   0.002  0.00  0.00           H+0
HETATM   58  H   UNK     0       8.578  -1.244  -0.236  0.00  0.00           H+0
HETATM   59  H   UNK     0       7.714  -1.220  -1.803  0.00  0.00           H+0
HETATM   60  H   UNK     0       9.339  -0.405  -1.694  0.00  0.00           H+0
HETATM   61  H   UNK     0       6.368  -1.682  -0.319  0.00  0.00           H+0
HETATM   62  H   UNK     0       4.165  -1.870   0.657  0.00  0.00           H+0
HETATM   63  H   UNK     0       2.348  -0.751  -1.363  0.00  0.00           H+0
HETATM   64  H   UNK     0      -0.458  -1.720   0.871  0.00  0.00           H+0
HETATM   65  H   UNK     0      -0.320  -3.840   1.680  0.00  0.00           H+0
HETATM   66  H   UNK     0       0.387  -5.578  -0.149  0.00  0.00           H+0
HETATM   67  H   UNK     0      -1.410  -5.699   0.265  0.00  0.00           H+0
HETATM   68  H   UNK     0      -2.284  -4.852   2.029  0.00  0.00           H+0
HETATM   69  H   UNK     0      -3.098  -3.841  -1.129  0.00  0.00           H+0
HETATM   70  H   UNK     0      -2.293  -5.287  -1.755  0.00  0.00           H+0
HETATM   71  H   UNK     0      -0.255  -3.901  -2.002  0.00  0.00           H+0
HETATM   72  H   UNK     0      -3.160   0.532  -1.136  0.00  0.00           H+0
HETATM   73  H   UNK     0      -3.720  -2.083   0.353  0.00  0.00           H+0
HETATM   74  H   UNK     0      -4.543  -1.391  -1.124  0.00  0.00           H+0
HETATM   75  H   UNK     0      -4.202   1.696   0.801  0.00  0.00           H+0
HETATM   76  H   UNK     0      -7.675   0.005   2.406  0.00  0.00           H+0
HETATM   77  H   UNK     0      -6.422  -1.851   1.079  0.00  0.00           H+0
HETATM   78  H   UNK     0      -2.323  -0.356   1.486  0.00  0.00           H+0
CONECT    1    2   42   43   44                                             
CONECT    2    1    3   45   46                                             
CONECT    3    2    4    5   47                                             
CONECT    4    3   48   49   50                                             
CONECT    5    3    6   40   51                                             
CONECT    6    5    7   52                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   19   53                                             
CONECT   10    9   11   54   55                                             
CONECT   11   10   12   18                                                  
CONECT   12   11   13   56                                                  
CONECT   13   12   14   57                                                  
CONECT   14   13   15   17                                                  
CONECT   15   14   16                                                       
CONECT   16   15   58   59   60                                             
CONECT   17   14   18   61                                                  
CONECT   18   17   11   62                                                  
CONECT   19    9   20   63                                                  
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   29   64                                             
CONECT   23   22   24   25   65                                             
CONECT   24   23   66                                                       
CONECT   25   23   26   27   67                                             
CONECT   26   25   68                                                       
CONECT   27   25   28   69   70                                             
CONECT   28   27   29   71                                                  
CONECT   29   28   30   22                                                  
CONECT   30   29   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33   39   72                                             
CONECT   33   32   34   73   74                                             
CONECT   34   33   35   38                                                  
CONECT   35   34   36   75                                                  
CONECT   36   35   37                                                       
CONECT   37   36   38   76                                                  
CONECT   38   37   34   77                                                  
CONECT   39   32   40   78                                                  
CONECT   40   39   41    5                                                  
CONECT   41   40                                                            
CONECT   42    1                                                            
CONECT   43    1                                                            
CONECT   44    1                                                            
CONECT   45    2                                                            
CONECT   46    2                                                            
CONECT   47    3                                                            
CONECT   48    4                                                            
CONECT   49    4                                                            
CONECT   50    4                                                            
CONECT   51    5                                                            
CONECT   52    6                                                            
CONECT   53    9                                                            
CONECT   54   10                                                            
CONECT   55   10                                                            
CONECT   56   12                                                            
CONECT   57   13                                                            
CONECT   58   16                                                            
CONECT   59   16                                                            
CONECT   60   16                                                            
CONECT   61   17                                                            
CONECT   62   18                                                            
CONECT   63   19                                                            
CONECT   64   22                                                            
CONECT   65   23                                                            
CONECT   66   24                                                            
CONECT   67   25                                                            
CONECT   68   26                                                            
CONECT   69   27                                                            
CONECT   70   27                                                            
CONECT   71   28                                                            
CONECT   72   32                                                            
CONECT   73   33                                                            
CONECT   74   33                                                            
CONECT   75   35                                                            
CONECT   76   37                                                            
CONECT   77   38                                                            
CONECT   78   39                                                            
MASTER        0    0    0    0    0    0    0    0   78    0  162    0
END

RDKit          3D

78 81  0  0  0  0  0  0  0  0999 V2000
   -2.1103    5.6724    0.3756 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3846    4.3517    0.6859 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5979    3.4747   -0.5002 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9919    4.2111   -1.7040 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8565    2.1478   -0.4394 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5619    2.4023   -0.3423 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5715    1.4081   -0.3843 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5688    1.5688   -1.1716 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5843    0.1663    0.4169 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6247    0.1334    1.4949 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9558    0.2613    0.8992 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5519    1.4852    0.7158 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8130    1.6145    0.1577 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4815    0.4699   -0.2221 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7396    0.5465   -0.7823 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.4048   -0.6404   -1.1630 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8684   -0.7612   -0.0315 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6210   -0.8829    0.5211 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7504   -0.9502   -0.5088 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.1824   -2.2342   -0.3366 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9876   -3.2069   -0.5550 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2461   -2.4746    0.0676 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3703   -3.8772    0.5612 C   0  0  2  0  0  0  0  0  0  0  0  0
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    2.3475   -0.7512   -1.3634 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0
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M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₇H₃₇N₇O₇

Average Mass

571.6350 Da

Monoisotopic Mass

571.27545 Da

IUPAC Name

(3S,4S,4aS,7S,10R,13R)-10-[(2R)-butan-2-yl]-3,4-dihydroxy-13-[(1H-imidazol-5-yl)methyl]-7-[(4-methoxyphenyl)methyl]-tetradecahydro-1H-pyridazino[1,6-a]1,4,7,10-tetraazacyclododecane-5,8,11,14-tetrone

Traditional Name

(3S,4S,4aS,7S,10R,13R)-10-[(2R)-butan-2-yl]-3,4-dihydroxy-13-(3H-imidazol-4-ylmethyl)-7-[(4-methoxyphenyl)methyl]-decahydro-1H-pyridazino[1,6-a]1,4,7,10-tetraazacyclododecane-5,8,11,14-tetrone

CAS Registry Number

Not Available

SMILES

CC[C@@H](C)[C@H]1NC(=O)[C@H](CC2=CC=C(OC)C=C2)NC(=O)C2C(O)C(O)CNN2C(=O)[C@@H](CC2=CN=CN2)NC1=O

InChI Identifier

InChI=1S/C27H37N7O7/c1-4-14(2)21-25(38)32-19(10-16-11-28-13-29-16)27(40)34-22(23(36)20(35)12-30-34)26(39)31-18(24(37)33-21)9-15-5-7-17(41-3)8-6-15/h5-8,11,13-14,18-23,30,35-36H,4,9-10,12H2,1-3H3,(H,28,29)(H,31,39)(H,32,38)(H,33,37)/t14-,18+,19-,20?,21-,22?,23?/m1/s1

InChI Key

NNIBMMQVFDWAAF-ABHIBMEJSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces lavendulae	NPAtlas	12670047

Species Where Detected

Species Name	Source	Reference
Streptomyces lavendulae H698 SY2	KNApSAcK Database	22123792

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.34	ALOGPS
logP	-1.9	ChemAxon
logS	-2.7	ALOGPS
pKa (Strongest Acidic)	10.45	ChemAxon
pKa (Strongest Basic)	6.74	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	198.01 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	155.45 m³·mol⁻¹	ChemAxon
Polarizability	58.76 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

NPAtlas ID

NPA005759

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9321332

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11146223

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Kunihiro S, Kaneda M: Glomecidin, a novel antifungal cyclic tetrapeptide produced by Streptomyces lavendulae H698 SY2. J Antibiot (Tokyo). 2003 Jan;56(1):30-3. doi: 10.7164/antibiotics.56.30. [PubMed:12670047 ]

Showing NP-Card for Glomecidin (NP0004567)

MOL for NP0004567 (Glomecidin)

3D MOL for NP0004567 (Glomecidin)

3D SDF for NP0004567 (Glomecidin)

3D-SDF for NP0004567 (Glomecidin)

PDB for NP0004567 (Glomecidin)

3D PDB for NP0004567 (Glomecidin)

SMILES for NP0004567 (Glomecidin)

INCHI for NP0004567 (Glomecidin)

Structure for NP0004567 (Glomecidin)

3D Structure for NP0004567 (Glomecidin)