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Record Information
Version2.0
Created at2020-12-09 02:00:41 UTC
Updated at2021-07-15 16:49:29 UTC
NP-MRD IDNP0004545
Secondary Accession NumbersNone
Natural Product Identification
Common NameScytovirin
Provided ByNPAtlasNPAtlas Logo
Description(4S)-4-{[(2S)-2-{[(2S)-2-{[(2R)-2-{[(2S)-2-{[(2S,3R)-2-({[(2S)-1-(2-{[(2S)-2-[(2-amino-1-hydroxyethylidene)amino]-1,3-dihydroxypropylidene]amino}acetyl)pyrrolidin-2-yl](hydroxy)methylidene}amino)-1,3-dihydroxybutylidene]amino}-1-hydroxy-3-(4-hydroxyphenyl)propylidene]amino}-1-hydroxy-3-sulfanylpropylidene]amino}-1-hydroxy-3-(1H-indol-3-yl)propylidene]amino}-1-hydroxy-3-(C-hydroxycarbonimidoyl)propylidene]amino}-4-{[(1S)-1-{[(1S)-1-{[(2S)-1-[(2S)-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]pyrrolidin-1-yl]-3-(C-hydroxycarbonimidoyl)-1-oxopropan-2-yl]-C-hydroxycarbonimidoyl}-2-(C-hydroxycarbonimidoyl)ethyl]-C-hydroxycarbonimidoyl}ethyl]-C-hydroxycarbonimidoyl}butanoic acid belongs to the class of organic compounds known as polypeptides. These are peptides containing ten or more amino acid residues. Scytovirin is found in Scytonema varium. Scytovirin was first documented in 2003 (PMID: 12614152). Based on a literature review very few articles have been published on (4S)-4-{[(2S)-2-{[(2S)-2-{[(2R)-2-{[(2S)-2-{[(2S,3R)-2-({[(2S)-1-(2-{[(2S)-2-[(2-amino-1-hydroxyethylidene)amino]-1,3-dihydroxypropylidene]amino}acetyl)pyrrolidin-2-yl](hydroxy)methylidene}amino)-1,3-dihydroxybutylidene]amino}-1-hydroxy-3-(4-hydroxyphenyl)propylidene]amino}-1-hydroxy-3-sulfanylpropylidene]amino}-1-hydroxy-3-(1H-indol-3-yl)propylidene]amino}-1-hydroxy-3-(C-hydroxycarbonimidoyl)propylidene]amino}-4-{[(1S)-1-{[(1S)-1-{[(2S)-1-[(2S)-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]pyrrolidin-1-yl]-3-(C-hydroxycarbonimidoyl)-1-oxopropan-2-yl]-C-hydroxycarbonimidoyl}-2-(C-hydroxycarbonimidoyl)ethyl]-C-hydroxycarbonimidoyl}ethyl]-C-hydroxycarbonimidoyl}butanoic acid.
Structure
Thumb
Synonyms
ValueSource
(4S)-4-{[(2S)-2-{[(2S)-2-{[(2R)-2-{[(2S)-2-{[(2S,3R)-2-({[(2S)-1-(2-{[(2S)-2-[(2-amino-1-hydroxyethylidene)amino]-1,3-dihydroxypropylidene]amino}acetyl)pyrrolidin-2-yl](hydroxy)methylidene}amino)-1,3-dihydroxybutylidene]amino}-1-hydroxy-3-(4-hydroxyphenyl)propylidene]amino}-1-hydroxy-3-sulfanylpropylidene]amino}-1-hydroxy-3-(1H-indol-3-yl)propylidene]amino}-1-hydroxy-3-(C-hydroxycarbonimidoyl)propylidene]amino}-4-{[(1S)-1-{[(1S)-1-{[(2S)-1-[(2S)-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]pyrrolidin-1-yl]-3-(C-hydroxycarbonimidoyl)-1-oxopropan-2-yl]-C-hydroxycarbonimidoyl}-2-(C-hydroxycarbonimidoyl)ethyl]-C-hydroxycarbonimidoyl}ethyl]-C-hydroxycarbonimidoyl}butanoateGenerator
(4S)-4-{[(2S)-2-{[(2S)-2-{[(2R)-2-{[(2S)-2-{[(2S,3R)-2-({[(2S)-1-(2-{[(2S)-2-[(2-amino-1-hydroxyethylidene)amino]-1,3-dihydroxypropylidene]amino}acetyl)pyrrolidin-2-yl](hydroxy)methylidene}amino)-1,3-dihydroxybutylidene]amino}-1-hydroxy-3-(4-hydroxyphenyl)propylidene]amino}-1-hydroxy-3-sulphanylpropylidene]amino}-1-hydroxy-3-(1H-indol-3-yl)propylidene]amino}-1-hydroxy-3-(C-hydroxycarbonimidoyl)propylidene]amino}-4-{[(1S)-1-{[(1S)-1-{[(2S)-1-[(2S)-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]pyrrolidin-1-yl]-3-(C-hydroxycarbonimidoyl)-1-oxopropan-2-yl]-C-hydroxycarbonimidoyl}-2-(C-hydroxycarbonimidoyl)ethyl]-C-hydroxycarbonimidoyl}ethyl]-C-hydroxycarbonimidoyl}butanoateGenerator
(4S)-4-{[(2S)-2-{[(2S)-2-{[(2R)-2-{[(2S)-2-{[(2S,3R)-2-({[(2S)-1-(2-{[(2S)-2-[(2-amino-1-hydroxyethylidene)amino]-1,3-dihydroxypropylidene]amino}acetyl)pyrrolidin-2-yl](hydroxy)methylidene}amino)-1,3-dihydroxybutylidene]amino}-1-hydroxy-3-(4-hydroxyphenyl)propylidene]amino}-1-hydroxy-3-sulphanylpropylidene]amino}-1-hydroxy-3-(1H-indol-3-yl)propylidene]amino}-1-hydroxy-3-(C-hydroxycarbonimidoyl)propylidene]amino}-4-{[(1S)-1-{[(1S)-1-{[(2S)-1-[(2S)-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]pyrrolidin-1-yl]-3-(C-hydroxycarbonimidoyl)-1-oxopropan-2-yl]-C-hydroxycarbonimidoyl}-2-(C-hydroxycarbonimidoyl)ethyl]-C-hydroxycarbonimidoyl}ethyl]-C-hydroxycarbonimidoyl}butanoic acidGenerator
Chemical FormulaC66H91N19O24S
Average Mass1566.6200 Da
Monoisotopic Mass1565.62051 Da
IUPAC Name(4S)-4-[(2S)-2-[(2S)-2-[(2R)-2-[(2S)-2-[(2S,3R)-2-{[(2S)-1-{2-[(2S)-2-(2-aminoacetamido)-3-hydroxypropanamido]acetyl}pyrrolidin-2-yl]formamido}-3-hydroxybutanamido]-3-(4-hydroxyphenyl)propanamido]-3-sulfanylpropanamido]-3-(1H-indol-3-yl)propanamido]-3-carbamoylpropanamido]-4-{[(1S)-1-{[(1S)-2-carbamoyl-1-{[(2S)-3-carbamoyl-1-[(2S)-2-[(carboxymethyl)carbamoyl]pyrrolidin-1-yl]-1-oxopropan-2-yl]carbamoyl}ethyl]carbamoyl}ethyl]carbamoyl}butanoic acid
Traditional Name(4S)-4-[(2S)-2-[(2S)-2-[(2R)-2-[(2S)-2-[(2S,3R)-2-{[(2S)-1-{2-[(2S)-2-(2-aminoacetamido)-3-hydroxypropanamido]acetyl}pyrrolidin-2-yl]formamido}-3-hydroxybutanamido]-3-(4-hydroxyphenyl)propanamido]-3-sulfanylpropanamido]-3-(1H-indol-3-yl)propanamido]-3-carbamoylpropanamido]-4-{[(1S)-1-{[(1S)-2-carbamoyl-1-{[(2S)-3-carbamoyl-1-[(2S)-2-(carboxymethylcarbamoyl)pyrrolidin-1-yl]-1-oxopropan-2-yl]carbamoyl}ethyl]carbamoyl}ethyl]carbamoyl}butanoic acid
CAS Registry NumberNot Available
SMILES
C[C@@H](O)[C@H](NC(=O)[C@@H]1CCCN1C(=O)CNC(=O)[C@H](CO)NC(=O)CN)C(=O)N[C@@H](CC1=CC=C(O)C=C1)C(=O)N[C@@H](CS)C(=O)N[C@@H](CC1=CNC2=CC=CC=C12)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CCC(O)=O)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CC(N)=O)C(=O)N1CCC[C@H]1C(=O)NCC(O)=O
InChI Identifier
InChI=1S/C66H91N19O24S/c1-30(55(98)77-40(21-47(68)89)61(104)81-42(23-49(70)91)66(109)85-18-6-9-45(85)63(106)73-27-53(96)97)74-57(100)37(15-16-52(94)95)76-60(103)41(22-48(69)90)79-59(102)39(20-33-25-71-36-8-4-3-7-35(33)36)78-62(105)44(29-110)82-58(101)38(19-32-11-13-34(88)14-12-32)80-65(108)54(31(2)87)83-64(107)46-10-5-17-84(46)51(93)26-72-56(99)43(28-86)75-50(92)24-67/h3-4,7-8,11-14,25,30-31,37-46,54,71,86-88,110H,5-6,9-10,15-24,26-29,67H2,1-2H3,(H2,68,89)(H2,69,90)(H2,70,91)(H,72,99)(H,73,106)(H,74,100)(H,75,92)(H,76,103)(H,77,98)(H,78,105)(H,79,102)(H,80,108)(H,81,104)(H,82,101)(H,83,107)(H,94,95)(H,96,97)/t30-,31+,37-,38-,39-,40-,41-,42-,43-,44-,45-,46-,54-/m0/s1
InChI KeyCYCBEOBJNJNJLP-UFTHWJGPSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Scytonema variumNPAtlas
Chemical Taxonomy
Description Belongs to the class of organic compounds known as polypeptides. These are peptides containing ten or more amino acid residues.
KingdomOrganic compounds
Super ClassOrganic Polymers
ClassPolypeptides
Sub ClassNot Available
Direct ParentPolypeptides
Alternative Parents
Substituents
  • Polypeptide
  • Alpha peptide
  • Tyrosine or derivatives
  • Phenylalanine or derivatives
  • Glutamic acid or derivatives
  • Asparagine or derivatives
  • N-acyl-alpha-amino acid
  • N-acyl-alpha amino acid or derivatives
  • Proline or derivatives
  • Alpha-amino acid amide
  • Triptan
  • Serine or derivatives
  • Cysteine or derivatives
  • Alanine or derivatives
  • 3-alkylindole
  • Amphetamine or derivatives
  • Alpha-amino acid or derivatives
  • N-substituted-alpha-amino acid
  • Indole
  • Indole or derivatives
  • Pyrrolidine carboxylic acid or derivatives
  • Pyrrolidine-2-carboxamide
  • N-acylpyrrolidine
  • 1-hydroxy-2-unsubstituted benzenoid
  • Phenol
  • Substituted pyrrole
  • N-acyl-amine
  • Benzenoid
  • Fatty acyl
  • Fatty amide
  • Dicarboxylic acid or derivatives
  • Monocyclic benzene moiety
  • Heteroaromatic compound
  • Tertiary carboxylic acid amide
  • Pyrrolidine
  • Pyrrole
  • Primary carboxylic acid amide
  • Amino acid or derivatives
  • Amino acid
  • Carboxamide group
  • Secondary alcohol
  • Secondary carboxylic acid amide
  • Carboxylic acid derivative
  • Carboxylic acid
  • Azacycle
  • Organoheterocyclic compound
  • Alkylthiol
  • Hydrocarbon derivative
  • Primary alcohol
  • Primary amine
  • Organic nitrogen compound
  • Carbonyl group
  • Organonitrogen compound
  • Organic oxide
  • Organooxygen compound
  • Amine
  • Alcohol
  • Organosulfur compound
  • Organic oxygen compound
  • Primary aliphatic amine
  • Organopnictogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-1.6ALOGPS
logP-15ChemAxon
logS-4.9ALOGPS
pKa (Strongest Acidic)3.22ChemAxon
pKa (Strongest Basic)7.83ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count25ChemAxon
Hydrogen Donor Count23ChemAxon
Polar Surface Area696.19 ŲChemAxon
Rotatable Bond Count43ChemAxon
Refractivity376.46 m³·mol⁻¹ChemAxon
Polarizability157.35 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA016016
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78440406
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139587544
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Bokesch HR, O'Keefe BR, McKee TC, Pannell LK, Patterson GM, Gardella RS, Sowder RC 2nd, Turpin J, Watson K, Buckheit RW Jr, Boyd MR: A potent novel anti-HIV protein from the cultured cyanobacterium Scytonema varium. Biochemistry. 2003 Mar 11;42(9):2578-84. doi: 10.1021/bi0205698. [PubMed:12614152 ]