NP-MRD: Showing NP-Card for GEX1Q5 (NP0004478)

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Record Information

Version

2.0

Created at

2020-12-09 01:57:34 UTC

Updated at

2021-07-15 16:49:18 UTC

NP-MRD ID

NP0004478

Secondary Accession Numbers

None

Natural Product Identification

Common Name

GEX1Q5

Provided By

NPAtlas

Description

GEX1Q5 is found in Streptomyces and Streptomyces sp. GEX1 (FERM BP-5347). GEX1Q5 was first documented in 2002 (PMID: 12523818). Based on a literature review very few articles have been published on 2-[(2R,5S,6S)-6-[(2E,4E,6S)-6-{[(2R,3R)-3-[(2R,3R,4R)-3,4-dihydroxypentan-2-yl]-2-methyloxiran-2-yl]methyl}hepta-2,4-dien-2-yl]-5-methyloxan-2-yl]acetic acid.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242118063D          

 70 71  0  0  0  0            999 V2000
   -3.4946    0.6560   -2.1535 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4889   -0.1560   -0.9167 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3436   -0.5063   -0.3591 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0461   -0.1041   -0.9445 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0505   -0.4861   -0.3398 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4393   -0.1247   -0.8623 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3163    0.5879   -2.1597 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0703    0.6575    0.2224 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4810    1.1448    0.0350 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7328    2.0794   -1.0888 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9221    1.7908    1.3306 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4751    0.5115    0.8238 C   0  0  2  0  0  0  0  0  0  0  0  0
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    6.6343   -0.2177    1.7373 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.2107   -1.5404    1.8453 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.2261    0.7693    2.6746 O   0  0  0  0  0  0  0  0  0  0  0  0
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    0.0301   -1.0846    0.5719 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0015   -1.0721   -1.0353 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.1462   -0.2720    1.5455 H   0  0  0  0  0  0  0  0  0  0  0  0
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    9.9162   -1.1097    1.2795 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.0606   -0.6007   -0.1671 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5165   -2.0729    0.8351 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2020    1.7902    2.3019 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.3548    2.1045    4.6677 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2116    0.6339   -0.7689 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3962   -1.0683   -0.1597 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6662    0.1099   -2.3249 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4443   -1.5156   -2.2813 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9692   -1.5190   -2.2389 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
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  4  5  2  0  0  0  0
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  2 20  1  0  0  0  0
 20 21  1  0  0  0  0
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 12  9  1  0  0  0  0
 29 20  1  0  0  0  0
  1 31  1  0  0  0  0
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  1 33  1  0  0  0  0
  3 34  1  0  0  0  0
  4 35  1  0  0  0  0
  5 36  1  0  0  0  0
  6 37  1  6  0  0  0
  7 38  1  0  0  0  0
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 17 53  1  1  0  0  0
 18 54  1  0  0  0  0
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 26 62  1  0  0  0  0
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 29 67  1  6  0  0  0
 30 68  1  0  0  0  0
 30 69  1  0  0  0  0
 30 70  1  0  0  0  0
M  END

     RDKit          3D

 70 71  0  0  0  0  0  0  0  0999 V2000
   -3.4946    0.6560   -2.1535 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4889   -0.1560   -0.9167 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652306242118063D          

 70 71  0  0  0  0            999 V2000
   -3.4946    0.6560   -2.1535 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4889   -0.1560   -0.9167 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3436   -0.5063   -0.3591 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0461   -0.1041   -0.9445 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0505   -0.4861   -0.3398 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4393   -0.1247   -0.8623 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3163    0.5879   -2.1597 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0703    0.6575    0.2224 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4810    1.1448    0.0350 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7328    2.0794   -1.0888 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9221    1.7908    1.3306 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4751    0.5115    0.8238 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.9481    0.4980    0.6054 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.3790   -0.1124   -0.6858 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6343   -0.2177    1.7373 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.2107   -1.5404    1.8453 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1128   -0.1339    1.7671 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.8678   -1.0305    0.8531 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6040    1.1610    1.6537 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7821   -0.5648   -0.3212 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.5488    0.5576    0.0445 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7183    0.0598    0.6341 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.3137    1.0320    1.6063 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.3517    1.3267    2.6901 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2261    0.7693    2.6746 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6740    2.2042    3.7162 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6557   -0.3004   -0.4793 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.8770   -0.7656   -1.6911 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.5685   -1.4028   -1.3124 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.7708   -2.8055   -0.7586 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1456    0.0392   -3.0230 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.0301   -1.0846    0.5719 H   0  0  0  0  0  0  0  0  0  0  0  0
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    2.2835    0.6685   -2.6712 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6516    0.0229   -2.8835 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9718    0.0985    1.1983 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3862    1.5568    0.4072 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8508    2.6193   -1.4735 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3996    2.9609   -0.7605 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2400    1.6352   -1.9807 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1462   -0.2720    1.5455 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2758    1.5792    0.5559 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4642   -0.2818   -1.2947 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1655    0.4235   -1.2097 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7548   -1.1391   -0.4745 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2903    0.2453    2.7239 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8557   -2.0526    2.3947 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4169   -0.4476    2.8157 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.9162   -1.1097    1.2795 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.0606   -0.6007   -0.1671 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5165   -2.0729    0.8351 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2020    1.7902    2.3019 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6487   -1.1487    0.6108 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4460   -0.8942    1.1498 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2526    0.5696    1.9976 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5664    1.9737    1.0645 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3548    2.1045    4.6677 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2116    0.6339   -0.7689 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3962   -1.0683   -0.1597 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6662    0.1099   -2.3249 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4443   -1.5156   -2.2813 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9692   -1.5190   -2.2389 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9800   -2.9962    0.0143 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6568   -3.5717   -1.5252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7757   -2.8403   -0.2839 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  9  8  1  1  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
  2 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
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 22 27  1  0  0  0  0
 27 28  1  0  0  0  0
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 29 30  1  0  0  0  0
 12  9  1  0  0  0  0
 29 20  1  0  0  0  0
  1 31  1  0  0  0  0
  1 32  1  0  0  0  0
  1 33  1  0  0  0  0
  3 34  1  0  0  0  0
  4 35  1  0  0  0  0
  5 36  1  0  0  0  0
  6 37  1  6  0  0  0
  7 38  1  0  0  0  0
  7 39  1  0  0  0  0
  7 40  1  0  0  0  0
  8 41  1  0  0  0  0
  8 42  1  0  0  0  0
 10 43  1  0  0  0  0
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 19 57  1  0  0  0  0
 20 58  1  1  0  0  0
 22 59  1  1  0  0  0
 23 60  1  0  0  0  0
 23 61  1  0  0  0  0
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 29 67  1  6  0  0  0
 30 68  1  0  0  0  0
 30 69  1  0  0  0  0
 30 70  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0004478

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)C([H])([H])[C@]1([H])O[C@]([H])(C(=C(/[H])\C(\[H])=C(/[H])[C@@]([H])(C([H])([H])[H])C([H])([H])[C@]2(O[C@]2([H])[C@]([H])(C([H])([H])[H])[C@@]([H])(O[H])[C@]([H])(O[H])C([H])([H])[H])C([H])([H])[H])\C([H])([H])[H])[C@@]([H])(C([H])([H])[H])C([H])([H])C1([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C24H40O6/c1-14(13-24(6)23(30-24)17(4)21(28)18(5)25)8-7-9-15(2)22-16(3)10-11-19(29-22)12-20(26)27/h7-9,14,16-19,21-23,25,28H,10-13H2,1-6H3,(H,26,27)/b8-7+,15-9+/t14-,16+,17-,18-,19-,21-,22-,23-,24-/m1/s1

> <INCHI_KEY>
TVGPUJOEKQVGKN-CMTJFJBNSA-N

> <FORMULA>
C24H40O6

> <MOLECULAR_WEIGHT>
424.578

> <EXACT_MASS>
424.282489008

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
70

> <JCHEM_AVERAGE_POLARIZABILITY>
49.58276969420693

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-[(2R,5S,6S)-6-[(2E,4E,6S)-6-{[(2R,3R)-3-[(2R,3R,4R)-3,4-dihydroxypentan-2-yl]-2-methyloxiran-2-yl]methyl}hepta-2,4-dien-2-yl]-5-methyloxan-2-yl]acetic acid

> <ALOGPS_LOGP>
3.48

> <JCHEM_LOGP>
3.3094918880000015

> <ALOGPS_LOGS>
-4.15

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
13.800377074898602

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.64905862562394

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0160507840838022

> <JCHEM_POLAR_SURFACE_AREA>
99.52

> <JCHEM_REFRACTIVITY>
117.5828

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.02e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(2R,5S,6S)-6-[(2E,4E,6S)-6-{[(2R,3R)-3-[(2R,3R,4R)-3,4-dihydroxypentan-2-yl]-2-methyloxiran-2-yl]methyl}hepta-2,4-dien-2-yl]-5-methyloxan-2-yl]acetic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 70 71  0  0  0  0  0  0  0  0999 V2000
   -3.4946    0.6560   -2.1535 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4889   -0.1560   -0.9167 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3436   -0.5063   -0.3591 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0461   -0.1041   -0.9445 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0505   -0.4861   -0.3398 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4393   -0.1247   -0.8623 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3163    0.5879   -2.1597 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0703    0.6575    0.2224 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4810    1.1448    0.0350 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7328    2.0794   -1.0888 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9221    1.7908    1.3306 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4751    0.5115    0.8238 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.9481    0.4980    0.6054 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.3790   -0.1124   -0.6858 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6343   -0.2177    1.7373 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.2107   -1.5404    1.8453 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1128   -0.1339    1.7671 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.8678   -1.0305    0.8531 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6040    1.1610    1.6537 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7821   -0.5648   -0.3212 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.5488    0.5576    0.0445 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7183    0.0598    0.6341 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.3137    1.0320    1.6063 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3517    1.3267    2.6901 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2261    0.7693    2.6746 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6740    2.2042    3.7162 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6557   -0.3004   -0.4793 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8770   -0.7656   -1.6911 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5685   -1.4028   -1.3124 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.7708   -2.8055   -0.7586 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1456    0.0392   -3.0230 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.7593    1.5046   -2.0843 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3861   -1.0980    0.5412 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9864    0.4826   -1.8304 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0301   -1.0846    0.5719 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0015   -1.0721   -1.0353 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8579    1.5798   -2.0469 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2835    0.6685   -2.6712 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6516    0.0229   -2.8835 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9718    0.0985    1.1983 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3862    1.5568    0.4072 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8508    2.6193   -1.4735 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3996    2.9609   -0.7605 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2400    1.6352   -1.9807 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1462   -0.2720    1.5455 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2758    1.5792    0.5559 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4642   -0.2818   -1.2947 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1655    0.4235   -1.2097 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7548   -1.1391   -0.4745 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2903    0.2453    2.7239 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8557   -2.0526    2.3947 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4169   -0.4476    2.8157 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.9162   -1.1097    1.2795 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.0606   -0.6007   -0.1671 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5165   -2.0729    0.8351 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2020    1.7902    2.3019 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6487   -1.1487    0.6108 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4460   -0.8942    1.1498 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2526    0.5696    1.9976 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5664    1.9737    1.0645 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3548    2.1045    4.6677 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2116    0.6339   -0.7689 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3962   -1.0683   -0.1597 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6662    0.1099   -2.3249 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4443   -1.5156   -2.2813 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9692   -1.5190   -2.2389 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9800   -2.9962    0.0143 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6568   -3.5717   -1.5252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7757   -2.8403   -0.2839 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  9  8  1  1
  9 10  1  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 17 19  1  0
  2 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  2  0
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 22 27  1  0
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 28 29  1  0
 29 30  1  0
 12  9  1  0
 29 20  1  0
  1 31  1  0
  1 32  1  0
  1 33  1  0
  3 34  1  0
  4 35  1  0
  5 36  1  0
  6 37  1  6
  7 38  1  0
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  8 41  1  0
  8 42  1  0
 10 43  1  0
 10 44  1  0
 10 45  1  0
 12 46  1  1
 13 47  1  6
 14 48  1  0
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 17 53  1  1
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 18 56  1  0
 19 57  1  0
 20 58  1  1
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 27 63  1  0
 27 64  1  0
 28 65  1  0
 28 66  1  0
 29 67  1  6
 30 68  1  0
 30 69  1  0
 30 70  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -3.495   0.656  -2.154  0.00  0.00           C+0
HETATM    2  C   UNK     0      -3.489  -0.156  -0.917  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.344  -0.506  -0.359  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.046  -0.104  -0.945  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.051  -0.486  -0.340  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.439  -0.125  -0.862  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.316   0.588  -2.160  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.070   0.658   0.222  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.481   1.145   0.035  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.733   2.079  -1.089  0.00  0.00           C+0
HETATM   11  O   UNK     0       3.922   1.791   1.331  0.00  0.00           O+0
HETATM   12  C   UNK     0       4.475   0.511   0.824  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.948   0.498   0.605  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.379  -0.112  -0.686  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.634  -0.218   1.737  0.00  0.00           C+0
HETATM   16  O   UNK     0       6.211  -1.540   1.845  0.00  0.00           O+0
HETATM   17  C   UNK     0       8.113  -0.134   1.767  0.00  0.00           C+0
HETATM   18  C   UNK     0       8.868  -1.030   0.853  0.00  0.00           C+0
HETATM   19  O   UNK     0       8.604   1.161   1.654  0.00  0.00           O+0
HETATM   20  C   UNK     0      -4.782  -0.565  -0.321  0.00  0.00           C+0
HETATM   21  O   UNK     0      -5.549   0.558   0.045  0.00  0.00           O+0
HETATM   22  C   UNK     0      -6.718   0.060   0.634  0.00  0.00           C+0
HETATM   23  C   UNK     0      -7.314   1.032   1.606  0.00  0.00           C+0
HETATM   24  C   UNK     0      -6.352   1.327   2.690  0.00  0.00           C+0
HETATM   25  O   UNK     0      -5.226   0.769   2.675  0.00  0.00           O+0
HETATM   26  O   UNK     0      -6.674   2.204   3.716  0.00  0.00           O+0
HETATM   27  C   UNK     0      -7.656  -0.300  -0.479  0.00  0.00           C+0
HETATM   28  C   UNK     0      -6.877  -0.766  -1.691  0.00  0.00           C+0
HETATM   29  C   UNK     0      -5.569  -1.403  -1.312  0.00  0.00           C+0
HETATM   30  C   UNK     0      -5.771  -2.805  -0.759  0.00  0.00           C+0
HETATM   31  H   UNK     0      -3.146   0.039  -3.023  0.00  0.00           H+0
HETATM   32  H   UNK     0      -4.476   1.121  -2.324  0.00  0.00           H+0
HETATM   33  H   UNK     0      -2.759   1.505  -2.084  0.00  0.00           H+0
HETATM   34  H   UNK     0      -2.386  -1.098   0.541  0.00  0.00           H+0
HETATM   35  H   UNK     0      -0.986   0.483  -1.830  0.00  0.00           H+0
HETATM   36  H   UNK     0       0.030  -1.085   0.572  0.00  0.00           H+0
HETATM   37  H   UNK     0       2.002  -1.072  -1.035  0.00  0.00           H+0
HETATM   38  H   UNK     0       0.858   1.580  -2.047  0.00  0.00           H+0
HETATM   39  H   UNK     0       2.284   0.669  -2.671  0.00  0.00           H+0
HETATM   40  H   UNK     0       0.652   0.023  -2.884  0.00  0.00           H+0
HETATM   41  H   UNK     0       1.972   0.099   1.198  0.00  0.00           H+0
HETATM   42  H   UNK     0       1.386   1.557   0.407  0.00  0.00           H+0
HETATM   43  H   UNK     0       2.851   2.619  -1.474  0.00  0.00           H+0
HETATM   44  H   UNK     0       4.400   2.961  -0.761  0.00  0.00           H+0
HETATM   45  H   UNK     0       4.240   1.635  -1.981  0.00  0.00           H+0
HETATM   46  H   UNK     0       4.146  -0.272   1.546  0.00  0.00           H+0
HETATM   47  H   UNK     0       6.276   1.579   0.556  0.00  0.00           H+0
HETATM   48  H   UNK     0       5.464  -0.282  -1.295  0.00  0.00           H+0
HETATM   49  H   UNK     0       7.165   0.424  -1.210  0.00  0.00           H+0
HETATM   50  H   UNK     0       6.755  -1.139  -0.475  0.00  0.00           H+0
HETATM   51  H   UNK     0       6.290   0.245   2.724  0.00  0.00           H+0
HETATM   52  H   UNK     0       6.856  -2.053   2.395  0.00  0.00           H+0
HETATM   53  H   UNK     0       8.417  -0.448   2.816  0.00  0.00           H+0
HETATM   54  H   UNK     0       9.916  -1.110   1.280  0.00  0.00           H+0
HETATM   55  H   UNK     0       9.061  -0.601  -0.167  0.00  0.00           H+0
HETATM   56  H   UNK     0       8.517  -2.073   0.835  0.00  0.00           H+0
HETATM   57  H   UNK     0       8.202   1.790   2.302  0.00  0.00           H+0
HETATM   58  H   UNK     0      -4.649  -1.149   0.611  0.00  0.00           H+0
HETATM   59  H   UNK     0      -6.446  -0.894   1.150  0.00  0.00           H+0
HETATM   60  H   UNK     0      -8.253   0.570   1.998  0.00  0.00           H+0
HETATM   61  H   UNK     0      -7.566   1.974   1.065  0.00  0.00           H+0
HETATM   62  H   UNK     0      -6.355   2.104   4.668  0.00  0.00           H+0
HETATM   63  H   UNK     0      -8.212   0.634  -0.769  0.00  0.00           H+0
HETATM   64  H   UNK     0      -8.396  -1.068  -0.160  0.00  0.00           H+0
HETATM   65  H   UNK     0      -6.666   0.110  -2.325  0.00  0.00           H+0
HETATM   66  H   UNK     0      -7.444  -1.516  -2.281  0.00  0.00           H+0
HETATM   67  H   UNK     0      -4.969  -1.519  -2.239  0.00  0.00           H+0
HETATM   68  H   UNK     0      -4.980  -2.996   0.014  0.00  0.00           H+0
HETATM   69  H   UNK     0      -5.657  -3.572  -1.525  0.00  0.00           H+0
HETATM   70  H   UNK     0      -6.776  -2.840  -0.284  0.00  0.00           H+0
CONECT    1    2   31   32   33                                             
CONECT    2    1    3   20                                                  
CONECT    3    2    4   34                                                  
CONECT    4    3    5   35                                                  
CONECT    5    4    6   36                                                  
CONECT    6    5    7    8   37                                             
CONECT    7    6   38   39   40                                             
CONECT    8    6    9   41   42                                             
CONECT    9    8   10   11   12                                             
CONECT   10    9   43   44   45                                             
CONECT   11    9   12                                                       
CONECT   12   11   13    9   46                                             
CONECT   13   12   14   15   47                                             
CONECT   14   13   48   49   50                                             
CONECT   15   13   16   17   51                                             
CONECT   16   15   52                                                       
CONECT   17   15   18   19   53                                             
CONECT   18   17   54   55   56                                             
CONECT   19   17   57                                                       
CONECT   20    2   21   29   58                                             
CONECT   21   20   22                                                       
CONECT   22   21   23   27   59                                             
CONECT   23   22   24   60   61                                             
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   62                                                       
CONECT   27   22   28   63   64                                             
CONECT   28   27   29   65   66                                             
CONECT   29   28   30   20   67                                             
CONECT   30   29   68   69   70                                             
CONECT   31    1                                                            
CONECT   32    1                                                            
CONECT   33    1                                                            
CONECT   34    3                                                            
CONECT   35    4                                                            
CONECT   36    5                                                            
CONECT   37    6                                                            
CONECT   38    7                                                            
CONECT   39    7                                                            
CONECT   40    7                                                            
CONECT   41    8                                                            
CONECT   42    8                                                            
CONECT   43   10                                                            
CONECT   44   10                                                            
CONECT   45   10                                                            
CONECT   46   12                                                            
CONECT   47   13                                                            
CONECT   48   14                                                            
CONECT   49   14                                                            
CONECT   50   14                                                            
CONECT   51   15                                                            
CONECT   52   16                                                            
CONECT   53   17                                                            
CONECT   54   18                                                            
CONECT   55   18                                                            
CONECT   56   18                                                            
CONECT   57   19                                                            
CONECT   58   20                                                            
CONECT   59   22                                                            
CONECT   60   23                                                            
CONECT   61   23                                                            
CONECT   62   26                                                            
CONECT   63   27                                                            
CONECT   64   27                                                            
CONECT   65   28                                                            
CONECT   66   28                                                            
CONECT   67   29                                                            
CONECT   68   30                                                            
CONECT   69   30                                                            
CONECT   70   30                                                            
MASTER        0    0    0    0    0    0    0    0   70    0  142    0
END

RDKit          3D

70 71  0  0  0  0  0  0  0  0999 V2000
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   -3.4889   -0.1560   -0.9167 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.4810    1.1448    0.0350 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7328    2.0794   -1.0888 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9221    1.7908    1.3306 O   0  0  0  0  0  0  0  0  0  0  0  0
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  7 40  1  0
  8 41  1  0
  8 42  1  0
 10 43  1  0
 10 44  1  0
 10 45  1  0
 12 46  1  1
 13 47  1  6
 14 48  1  0
 14 49  1  0
 14 50  1  0
 15 51  1  1
 16 52  1  0
 17 53  1  1
 18 54  1  0
 18 55  1  0
 18 56  1  0
 19 57  1  0
 20 58  1  1
 22 59  1  1
 23 60  1  0
 23 61  1  0
 26 62  1  0
 27 63  1  0
 27 64  1  0
 28 65  1  0
 28 66  1  0
 29 67  1  6
 30 68  1  0
 30 69  1  0
 30 70  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
2-[(2R,5S,6S)-6-[(2E,4E,6S)-6-{[(2R,3R)-3-[(2R,3R,4R)-3,4-dihydroxypentan-2-yl]-2-methyloxiran-2-yl]methyl}hepta-2,4-dien-2-yl]-5-methyloxan-2-yl]acetate	Generator

Chemical Formula

C₂₄H₄₀O₆

Average Mass

424.5780 Da

Monoisotopic Mass

424.28249 Da

IUPAC Name

2-[(2R,5S,6S)-6-[(2E,4E,6S)-6-{[(2R,3R)-3-[(2R,3R,4R)-3,4-dihydroxypentan-2-yl]-2-methyloxiran-2-yl]methyl}hepta-2,4-dien-2-yl]-5-methyloxan-2-yl]acetic acid

Traditional Name

[(2R,5S,6S)-6-[(2E,4E,6S)-6-{[(2R,3R)-3-[(2R,3R,4R)-3,4-dihydroxypentan-2-yl]-2-methyloxiran-2-yl]methyl}hepta-2,4-dien-2-yl]-5-methyloxan-2-yl]acetic acid

CAS Registry Number

Not Available

SMILES

C[C@@H](O)[C@H](O)[C@@H](C)[C@H]1O[C@]1(C)C[C@H](C)\C=C\C=C(/C)[C@H]1O[C@@H](CC(O)=O)CC[C@@H]1C

InChI Identifier

InChI=1S/C24H40O6/c1-14(13-24(6)23(30-24)17(4)21(28)18(5)25)8-7-9-15(2)22-16(3)10-11-19(29-22)12-20(26)27/h7-9,14,16-19,21-23,25,28H,10-13H2,1-6H3,(H,26,27)/b8-7+,15-9+/t14-,16+,17-,18-,19-,21-,22-,23-,24-/m1/s1

InChI Key

TVGPUJOEKQVGKN-CMTJFJBNSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	12523818
Streptomyces sp. GEX1 (FERM BP-5347)	Bacteria	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.48	ALOGPS
logP	3.31	ChemAxon
logS	-4.2	ALOGPS
pKa (Strongest Acidic)	4.65	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	99.52 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	117.58 m³·mol⁻¹	ChemAxon
Polarizability	49.58 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA007390

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

59702727

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

72188933

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Sakai Y, Yoshida T, Ochiai K, Uosaki Y, Saitoh Y, Tanaka F, Akiyama T, Akinaga S, Mizukami T: GEX1 compounds, novel antitumor antibiotics related to herboxidiene, produced by Streptomyces sp. I. Taxonomy, production, isolation, physicochemical properties and biological activities. J Antibiot (Tokyo). 2002 Oct;55(10):855-62. doi: 10.7164/antibiotics.55.855. [PubMed:12523818 ]

Showing NP-Card for GEX1Q5 (NP0004478)

MOL for NP0004478 (GEX1Q5)

3D MOL for NP0004478 (GEX1Q5)

3D SDF for NP0004478 (GEX1Q5)

3D-SDF for NP0004478 (GEX1Q5)

PDB for NP0004478 (GEX1Q5)

3D PDB for NP0004478 (GEX1Q5)

SMILES for NP0004478 (GEX1Q5)

INCHI for NP0004478 (GEX1Q5)

Structure for NP0004478 (GEX1Q5)

3D Structure for NP0004478 (GEX1Q5)