NP-MRD: Showing NP-Card for Spiroidesin (NP0004212)

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Record Information

Version

2.0

Created at

2020-12-09 01:42:10 UTC

Updated at

2021-07-15 16:48:33 UTC

NP-MRD ID

NP0004212

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Spiroidesin

Provided By

NPAtlas

Description

Spiroidesin is found in Anabaena and Anabaena spiroides. Spiroidesin was first documented in 2002 (PMID: 12088439). Based on a literature review very few articles have been published on (2R)-2-{[(2S)-1-hydroxy-2-{[(2R)-1-hydroxy-2-[(1-hydroxyhexylidene)amino]-4-(4-hydroxyphenyl)butylidene]amino}-4-(4-hydroxyphenyl)butylidene]amino}-3-phenylpropanoic acid.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652307012117513D          

 88 90  0  0  0  0            999 V2000
   -5.6990    6.1507   -0.9979 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3087    4.9336   -1.6410 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -4.1039    3.8654   -2.0531 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.3055    2.6052   -1.9625 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0998    2.1425   -0.5265 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3543    3.0132    0.3364 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6605    0.8262   -0.3497 N   0  0  1  0  0  0  0  0  0  0  0  0
   -2.2459   -0.4157   -0.1823 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.9194   -1.3972    0.7525 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.9197   -1.0261    2.1922 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.6143   -2.1082    2.9950 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.7130   -2.9969    3.8611 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
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M  END

     RDKit          3D

 88 90  0  0  0  0  0  0  0  0999 V2000
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   -1.8593   -1.0364    2.5610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5315   -1.2072    2.6725 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7931   -2.9381    3.9680 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8410   -4.8208    6.1259 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0631   -4.9100    4.6952 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8685   -3.2182    3.4462 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2640   -1.7547   -1.3586 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5547   -1.9287    0.7982 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0072   -1.4598   -2.2577 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3214   -2.1012   -1.1986 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6039   -3.4463   -1.3491 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0903   -4.0282   -0.6135 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2771   -3.5407   -3.6784 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8731   -4.5473   -5.8989 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9889   -6.8129   -6.5936 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6005   -5.7273   -4.3389 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0268   -4.7064   -2.1328 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9104   -1.0523    0.8613 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4157    1.8991    1.0430 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0649    0.4319    0.5975 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1751    1.2281   -0.7348 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3138    1.7719    2.2288 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1826    4.0117    2.9342 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2989    6.0436    1.8494 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6091    5.8384    0.1070 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7473    3.6113   -0.5743 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6005    1.9180    4.4171 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 15 17  1  0
 17 18  2  0
  9 19  1  0
 19 20  2  0
 19 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  2  0
 26 27  1  0
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 28 29  1  0
 28 30  1  0
 30 31  2  0
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 35 36  1  0
 36 37  1  0
 37 38  2  0
 38 39  1  0
 39 40  2  0
 40 41  1  0
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 35 43  1  0
 43 44  2  0
 43 45  1  0
 18 12  1  0
 31 25  1  0
 42 37  1  0
  1 46  1  0
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  3 51  1  0
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  4 53  1  0
  4 54  1  0
  5 55  1  0
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  8 57  1  0
  9 58  1  6
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 11 61  1  0
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 16 65  1  0
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 21 68  1  0
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 36 82  1  0
 38 83  1  0
 39 84  1  0
 40 85  1  0
 41 86  1  0
 42 87  1  0
 45 88  1  0
M  END


  Mrv1652307012117513D          

 88 90  0  0  0  0            999 V2000
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   -6.3087    4.9336   -1.6410 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.4937    3.7005   -1.4892 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.1039    3.8654   -2.0531 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.3055    2.6052   -1.9625 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0998    2.1425   -0.5265 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3543    3.0132    0.3364 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6605    0.8262   -0.3497 N   0  0  1  0  0  0  0  0  0  0  0  0
   -2.2459   -0.4157   -0.1823 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.9194   -1.3972    0.7525 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.9197   -1.0261    2.1922 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.6143   -2.1082    2.9950 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.2293   -2.0208   -1.3185 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6742   -3.4248   -1.4912 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1162   -4.0584   -2.7527 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.6168   -4.6005   -5.0346 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7651   -5.2039   -5.2990 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2012   -5.8041   -6.4701 O   0  0  0  0  0  0  0  0  0  0  0  0
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    2.1470   -0.0585    0.1463 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.4371   -0.1684    0.7305 N   0  0  0  0  0  0  0  0  0  0  0  0
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    5.9760    2.5658    0.7939 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9221    2.6649    1.7630 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4227    3.9163    2.1665 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9440    5.0691    1.5621 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9839    4.9667    0.5766 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5132    3.7303    0.2054 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3992    0.9133    2.6261 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1169   -0.2551    3.1339 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9174    1.8468    3.4260 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4720    5.8756    0.0596 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
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 37 38  2  0  0  0  0
 38 39  1  0  0  0  0
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 35 43  1  0  0  0  0
 43 44  2  0  0  0  0
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 18 12  1  0  0  0  0
 31 25  1  0  0  0  0
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  8 57  1  0  0  0  0
  9 58  1  6  0  0  0
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 41 86  1  0  0  0  0
 42 87  1  0  0  0  0
 45 88  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0004212

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)[C@]([H])(N([H])C(=O)[C@@]([H])(N([H])C(=O)[C@]([H])(N([H])C(=O)C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[H])C([H])([H])C([H])([H])C1=C([H])C([H])=C(O[H])C([H])=C1[H])C([H])([H])C([H])([H])C1=C([H])C([H])=C(O[H])C([H])=C1[H])C([H])([H])C1=C([H])C([H])=C([H])C([H])=C1[H]

> <INCHI_IDENTIFIER>
InChI=1S/C35H43N3O7/c1-2-3-5-10-32(41)36-29(21-15-24-11-17-27(39)18-12-24)33(42)37-30(22-16-25-13-19-28(40)20-14-25)34(43)38-31(35(44)45)23-26-8-6-4-7-9-26/h4,6-9,11-14,17-20,29-31,39-40H,2-3,5,10,15-16,21-23H2,1H3,(H,36,41)(H,37,42)(H,38,43)(H,44,45)/t29-,30+,31-/m1/s1

> <INCHI_KEY>
XFLVJFHNXBWJDL-MJSOWUPRSA-N

> <FORMULA>
C35H43N3O7

> <MOLECULAR_WEIGHT>
617.743

> <EXACT_MASS>
617.310100737

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
88

> <JCHEM_AVERAGE_POLARIZABILITY>
69.25066006798872

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R)-2-[(2S)-2-[(2R)-2-hexanamido-4-(4-hydroxyphenyl)butanamido]-4-(4-hydroxyphenyl)butanamido]-3-phenylpropanoic acid

> <ALOGPS_LOGP>
3.50

> <JCHEM_LOGP>
5.452324925333333

> <ALOGPS_LOGS>
-5.56

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
9.204127185507511

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.81705798077547

> <JCHEM_PKA_STRONGEST_BASIC>
-1.3125752210118105

> <JCHEM_POLAR_SURFACE_AREA>
165.06

> <JCHEM_REFRACTIVITY>
169.98659999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
18

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.72e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R)-2-[(2S)-2-[(2R)-2-hexanamido-4-(4-hydroxyphenyl)butanamido]-4-(4-hydroxyphenyl)butanamido]-3-phenylpropanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 88 90  0  0  0  0  0  0  0  0999 V2000
   -5.6990    6.1507   -0.9979 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3087    4.9336   -1.6410 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4937    3.7005   -1.4892 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1039    3.8654   -2.0531 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3055    2.6052   -1.9625 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0998    2.1425   -0.5265 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3543    3.0132    0.3364 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6605    0.8262   -0.3497 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2459   -0.4157   -0.1823 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.9194   -1.3972    0.7525 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9197   -1.0261    2.1922 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6143   -2.1082    2.9950 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9904   -2.0411    3.1467 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7130   -2.9969    3.8611 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9869   -4.0376    4.4245 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7098   -4.9926    5.1335 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6394   -4.0851    4.2670 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9053   -3.1441    3.5565 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7699   -0.4651    0.2837 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4167    0.1882    1.3008 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1051   -1.2379   -0.4832 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.4977   -1.3803   -0.1786 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2293   -2.0208   -1.3185 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6742   -3.4248   -1.4912 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1162   -4.0584   -2.7527 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2092   -4.0234   -3.8619 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6168   -4.6005   -5.0346 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7651   -5.2039   -5.2990 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2012   -5.8041   -6.4701 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6794   -5.2395   -4.1829 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3176   -4.6704   -2.9662 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1470   -0.0585    0.1463 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5678    0.9916   -0.0792 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4371   -0.1684    0.7305 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.0939    1.0647    1.1550 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.3754    1.2850    0.3500 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9760    2.5658    0.7939 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9221    2.6649    1.7630 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4227    3.9163    2.1665 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9440    5.0691    1.5621 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9839    4.9667    0.5766 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5132    3.7303    0.2054 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3992    0.9133    2.6261 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1169   -0.2551    3.1339 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9174    1.8468    3.4260 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4720    5.8756    0.0596 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3971    7.0248   -1.0138 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7322    6.3825   -1.5154 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5960    5.1707   -2.7011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3155    4.7786   -1.1415 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9981    2.8630   -2.0437 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4945    3.3817   -0.4187 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5860    4.7051   -1.5160 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2055    4.1685   -3.1226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3554    2.7410   -2.4927 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9331    1.8249   -2.5037 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6384    1.0399    0.9899 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1723   -0.9786   -1.1960 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4644   -2.3963    0.6164 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0065   -1.5759    0.4340 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4471   -0.1070    2.4244 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8593   -1.0364    2.5610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5315   -1.2072    2.6725 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7931   -2.9381    3.9680 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8410   -4.8208    6.1259 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0631   -4.9100    4.6952 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8685   -3.2182    3.4462 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2640   -1.7547   -1.3586 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5547   -1.9287    0.7982 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0072   -1.4598   -2.2577 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3214   -2.1012   -1.1986 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6039   -3.4463   -1.3491 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0903   -4.0282   -0.6135 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2771   -3.5407   -3.6784 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8731   -4.5473   -5.8989 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9889   -6.8129   -6.5936 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6005   -5.7273   -4.3389 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0268   -4.7064   -2.1328 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9104   -1.0523    0.8613 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4157    1.8991    1.0430 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0649    0.4319    0.5975 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1751    1.2281   -0.7348 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3138    1.7719    2.2288 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1826    4.0117    2.9342 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2989    6.0436    1.8494 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6091    5.8384    0.1070 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7473    3.6113   -0.5743 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6005    1.9180    4.4171 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 15 17  1  0
 17 18  2  0
  9 19  1  0
 19 20  2  0
 19 21  1  0
 21 22  1  0
 22 23  1  0
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 24 25  1  0
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 28 30  1  0
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 22 32  1  0
 32 33  2  0
 32 34  1  0
 34 35  1  0
 35 36  1  0
 36 37  1  0
 37 38  2  0
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 39 40  2  0
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 41 42  2  0
 35 43  1  0
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 18 12  1  0
 31 25  1  0
 42 37  1  0
  1 46  1  0
  1 47  1  0
  1 48  1  0
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  2 50  1  0
  3 51  1  0
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  4 53  1  0
  4 54  1  0
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  8 57  1  0
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 45 88  1  0
M  END

HEADER    PROTEIN                                 01-JUL-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   01-JUL-21         0                                  
HETATM    1  C   UNK     0      -5.699   6.151  -0.998  0.00  0.00           C+0
HETATM    2  C   UNK     0      -6.309   4.934  -1.641  0.00  0.00           C+0
HETATM    3  C   UNK     0      -5.494   3.700  -1.489  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.104   3.865  -2.053  0.00  0.00           C+0
HETATM    5  C   UNK     0      -3.305   2.605  -1.962  0.00  0.00           C+0
HETATM    6  C   UNK     0      -3.100   2.143  -0.527  0.00  0.00           C+0
HETATM    7  O   UNK     0      -3.354   3.013   0.336  0.00  0.00           O+0
HETATM    8  N   UNK     0      -2.660   0.826  -0.350  0.00  0.00           N+0
HETATM    9  C   UNK     0      -2.246  -0.416  -0.182  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.919  -1.397   0.753  0.00  0.00           C+0
HETATM   11  C   UNK     0      -2.920  -1.026   2.192  0.00  0.00           C+0
HETATM   12  C   UNK     0      -3.614  -2.108   2.995  0.00  0.00           C+0
HETATM   13  C   UNK     0      -4.990  -2.041   3.147  0.00  0.00           C+0
HETATM   14  C   UNK     0      -5.713  -2.997   3.861  0.00  0.00           C+0
HETATM   15  C   UNK     0      -4.987  -4.038   4.425  0.00  0.00           C+0
HETATM   16  O   UNK     0      -5.710  -4.993   5.133  0.00  0.00           O+0
HETATM   17  C   UNK     0      -3.639  -4.085   4.267  0.00  0.00           C+0
HETATM   18  C   UNK     0      -2.905  -3.144   3.557  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.770  -0.465   0.284  0.00  0.00           C+0
HETATM   20  O   UNK     0      -0.417   0.188   1.301  0.00  0.00           O+0
HETATM   21  N   UNK     0       0.105  -1.238  -0.483  0.00  0.00           N+0
HETATM   22  C   UNK     0       1.498  -1.380  -0.179  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.229  -2.021  -1.319  0.00  0.00           C+0
HETATM   24  C   UNK     0       1.674  -3.425  -1.491  0.00  0.00           C+0
HETATM   25  C   UNK     0       2.116  -4.058  -2.753  0.00  0.00           C+0
HETATM   26  C   UNK     0       1.209  -4.023  -3.862  0.00  0.00           C+0
HETATM   27  C   UNK     0       1.617  -4.601  -5.035  0.00  0.00           C+0
HETATM   28  C   UNK     0       2.765  -5.204  -5.299  0.00  0.00           C+0
HETATM   29  O   UNK     0       3.201  -5.804  -6.470  0.00  0.00           O+0
HETATM   30  C   UNK     0       3.679  -5.239  -4.183  0.00  0.00           C+0
HETATM   31  C   UNK     0       3.318  -4.670  -2.966  0.00  0.00           C+0
HETATM   32  C   UNK     0       2.147  -0.059   0.146  0.00  0.00           C+0
HETATM   33  O   UNK     0       1.568   0.992  -0.079  0.00  0.00           O+0
HETATM   34  N   UNK     0       3.437  -0.168   0.731  0.00  0.00           N+0
HETATM   35  C   UNK     0       4.094   1.065   1.155  0.00  0.00           C+0
HETATM   36  C   UNK     0       5.375   1.285   0.350  0.00  0.00           C+0
HETATM   37  C   UNK     0       5.976   2.566   0.794  0.00  0.00           C+0
HETATM   38  C   UNK     0       6.922   2.665   1.763  0.00  0.00           C+0
HETATM   39  C   UNK     0       7.423   3.916   2.167  0.00  0.00           C+0
HETATM   40  C   UNK     0       6.944   5.069   1.562  0.00  0.00           C+0
HETATM   41  C   UNK     0       5.984   4.967   0.577  0.00  0.00           C+0
HETATM   42  C   UNK     0       5.513   3.730   0.205  0.00  0.00           C+0
HETATM   43  C   UNK     0       4.399   0.913   2.626  0.00  0.00           C+0
HETATM   44  O   UNK     0       4.117  -0.255   3.134  0.00  0.00           O+0
HETATM   45  O   UNK     0       4.917   1.847   3.426  0.00  0.00           O+0
HETATM   46  H   UNK     0      -5.472   5.876   0.060  0.00  0.00           H+0
HETATM   47  H   UNK     0      -6.397   7.025  -1.014  0.00  0.00           H+0
HETATM   48  H   UNK     0      -4.732   6.383  -1.515  0.00  0.00           H+0
HETATM   49  H   UNK     0      -6.596   5.171  -2.701  0.00  0.00           H+0
HETATM   50  H   UNK     0      -7.316   4.779  -1.141  0.00  0.00           H+0
HETATM   51  H   UNK     0      -5.998   2.863  -2.044  0.00  0.00           H+0
HETATM   52  H   UNK     0      -5.495   3.382  -0.419  0.00  0.00           H+0
HETATM   53  H   UNK     0      -3.586   4.705  -1.516  0.00  0.00           H+0
HETATM   54  H   UNK     0      -4.205   4.168  -3.123  0.00  0.00           H+0
HETATM   55  H   UNK     0      -2.355   2.741  -2.493  0.00  0.00           H+0
HETATM   56  H   UNK     0      -3.933   1.825  -2.504  0.00  0.00           H+0
HETATM   57  H   UNK     0      -2.638   1.040   0.990  0.00  0.00           H+0
HETATM   58  H   UNK     0      -2.172  -0.979  -1.196  0.00  0.00           H+0
HETATM   59  H   UNK     0      -2.464  -2.396   0.616  0.00  0.00           H+0
HETATM   60  H   UNK     0      -4.006  -1.576   0.434  0.00  0.00           H+0
HETATM   61  H   UNK     0      -3.447  -0.107   2.424  0.00  0.00           H+0
HETATM   62  H   UNK     0      -1.859  -1.036   2.561  0.00  0.00           H+0
HETATM   63  H   UNK     0      -5.532  -1.207   2.672  0.00  0.00           H+0
HETATM   64  H   UNK     0      -6.793  -2.938   3.968  0.00  0.00           H+0
HETATM   65  H   UNK     0      -5.841  -4.821   6.126  0.00  0.00           H+0
HETATM   66  H   UNK     0      -3.063  -4.910   4.695  0.00  0.00           H+0
HETATM   67  H   UNK     0      -1.869  -3.218   3.446  0.00  0.00           H+0
HETATM   68  H   UNK     0      -0.264  -1.755  -1.359  0.00  0.00           H+0
HETATM   69  H   UNK     0       1.555  -1.929   0.798  0.00  0.00           H+0
HETATM   70  H   UNK     0       2.007  -1.460  -2.258  0.00  0.00           H+0
HETATM   71  H   UNK     0       3.321  -2.101  -1.199  0.00  0.00           H+0
HETATM   72  H   UNK     0       0.604  -3.446  -1.349  0.00  0.00           H+0
HETATM   73  H   UNK     0       2.090  -4.028  -0.614  0.00  0.00           H+0
HETATM   74  H   UNK     0       0.277  -3.541  -3.678  0.00  0.00           H+0
HETATM   75  H   UNK     0       0.873  -4.547  -5.899  0.00  0.00           H+0
HETATM   76  H   UNK     0       2.989  -6.813  -6.594  0.00  0.00           H+0
HETATM   77  H   UNK     0       4.601  -5.727  -4.339  0.00  0.00           H+0
HETATM   78  H   UNK     0       4.027  -4.706  -2.133  0.00  0.00           H+0
HETATM   79  H   UNK     0       3.910  -1.052   0.861  0.00  0.00           H+0
HETATM   80  H   UNK     0       3.416   1.899   1.043  0.00  0.00           H+0
HETATM   81  H   UNK     0       6.065   0.432   0.598  0.00  0.00           H+0
HETATM   82  H   UNK     0       5.175   1.228  -0.735  0.00  0.00           H+0
HETATM   83  H   UNK     0       7.314   1.772   2.229  0.00  0.00           H+0
HETATM   84  H   UNK     0       8.183   4.012   2.934  0.00  0.00           H+0
HETATM   85  H   UNK     0       7.299   6.044   1.849  0.00  0.00           H+0
HETATM   86  H   UNK     0       5.609   5.838   0.107  0.00  0.00           H+0
HETATM   87  H   UNK     0       4.747   3.611  -0.574  0.00  0.00           H+0
HETATM   88  H   UNK     0       4.601   1.918   4.417  0.00  0.00           H+0
CONECT    1    2   46   47   48                                             
CONECT    2    1    3   49   50                                             
CONECT    3    2    4   51   52                                             
CONECT    4    3    5   53   54                                             
CONECT    5    4    6   55   56                                             
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   57                                                  
CONECT    9    8   10   19   58                                             
CONECT   10    9   11   59   60                                             
CONECT   11   10   12   61   62                                             
CONECT   12   11   13   18                                                  
CONECT   13   12   14   63                                                  
CONECT   14   13   15   64                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15   65                                                       
CONECT   17   15   18   66                                                  
CONECT   18   17   12   67                                                  
CONECT   19    9   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   68                                                  
CONECT   22   21   23   32   69                                             
CONECT   23   22   24   70   71                                             
CONECT   24   23   25   72   73                                             
CONECT   25   24   26   31                                                  
CONECT   26   25   27   74                                                  
CONECT   27   26   28   75                                                  
CONECT   28   27   29   30                                                  
CONECT   29   28   76                                                       
CONECT   30   28   31   77                                                  
CONECT   31   30   25   78                                                  
CONECT   32   22   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   35   79                                                  
CONECT   35   34   36   43   80                                             
CONECT   36   35   37   81   82                                             
CONECT   37   36   38   42                                                  
CONECT   38   37   39   83                                                  
CONECT   39   38   40   84                                                  
CONECT   40   39   41   85                                                  
CONECT   41   40   42   86                                                  
CONECT   42   41   37   87                                                  
CONECT   43   35   44   45                                                  
CONECT   44   43                                                            
CONECT   45   43   88                                                       
CONECT   46    1                                                            
CONECT   47    1                                                            
CONECT   48    1                                                            
CONECT   49    2                                                            
CONECT   50    2                                                            
CONECT   51    3                                                            
CONECT   52    3                                                            
CONECT   53    4                                                            
CONECT   54    4                                                            
CONECT   55    5                                                            
CONECT   56    5                                                            
CONECT   57    8                                                            
CONECT   58    9                                                            
CONECT   59   10                                                            
CONECT   60   10                                                            
CONECT   61   11                                                            
CONECT   62   11                                                            
CONECT   63   13                                                            
CONECT   64   14                                                            
CONECT   65   16                                                            
CONECT   66   17                                                            
CONECT   67   18                                                            
CONECT   68   21                                                            
CONECT   69   22                                                            
CONECT   70   23                                                            
CONECT   71   23                                                            
CONECT   72   24                                                            
CONECT   73   24                                                            
CONECT   74   26                                                            
CONECT   75   27                                                            
CONECT   76   29                                                            
CONECT   77   30                                                            
CONECT   78   31                                                            
CONECT   79   34                                                            
CONECT   80   35                                                            
CONECT   81   36                                                            
CONECT   82   36                                                            
CONECT   83   38                                                            
CONECT   84   39                                                            
CONECT   85   40                                                            
CONECT   86   41                                                            
CONECT   87   42                                                            
CONECT   88   45                                                            
MASTER        0    0    0    0    0    0    0    0   88    0  180    0
END

RDKit          3D

88 90  0  0  0  0  0  0  0  0999 V2000
   -5.6990    6.1507   -0.9979 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3087    4.9336   -1.6410 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4937    3.7005   -1.4892 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1039    3.8654   -2.0531 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3055    2.6052   -1.9625 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0998    2.1425   -0.5265 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3543    3.0132    0.3364 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.9197   -1.0261    2.1922 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.7130   -2.9969    3.8611 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.7098   -4.9926    5.1335 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.8685   -3.2182    3.4462 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.5547   -1.9287    0.7982 H   0  0  0  0  0  0  0  0  0  0  0  0
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  9 58  1  6
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 45 88  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
(2R)-2-{[(2S)-1-hydroxy-2-{[(2R)-1-hydroxy-2-[(1-hydroxyhexylidene)amino]-4-(4-hydroxyphenyl)butylidene]amino}-4-(4-hydroxyphenyl)butylidene]amino}-3-phenylpropanoate	Generator

Chemical Formula

C₃₅H₄₃N₃O₇

Average Mass

617.7430 Da

Monoisotopic Mass

617.31010 Da

IUPAC Name

(2R)-2-[(2S)-2-[(2R)-2-hexanamido-4-(4-hydroxyphenyl)butanamido]-4-(4-hydroxyphenyl)butanamido]-3-phenylpropanoic acid

Traditional Name

(2R)-2-[(2S)-2-[(2R)-2-hexanamido-4-(4-hydroxyphenyl)butanamido]-4-(4-hydroxyphenyl)butanamido]-3-phenylpropanoic acid

CAS Registry Number

Not Available

SMILES

CCCCCC(=O)N[C@H](CCC1=CC=C(O)C=C1)C(=O)N[C@@H](CCC1=CC=C(O)C=C1)C(=O)N[C@H](CC1=CC=CC=C1)C(O)=O

InChI Identifier

InChI=1S/C35H43N3O7/c1-2-3-5-10-32(41)36-29(21-15-24-11-17-27(39)18-12-24)33(42)37-30(22-16-25-13-19-28(40)20-14-25)34(43)38-31(35(44)45)23-26-8-6-4-7-9-26/h4,6-9,11-14,17-20,29-31,39-40H,2-3,5,10,15-16,21-23H2,1H3,(H,36,41)(H,37,42)(H,38,43)(H,44,45)/t29-,30+,31-/m1/s1

InChI Key

XFLVJFHNXBWJDL-MJSOWUPRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Anabaena	NPAtlas	12088439
Anabaena spiroides	Plant	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.5	ALOGPS
logP	5.45	ChemAxon
logS	-5.6	ALOGPS
pKa (Strongest Acidic)	3.82	ChemAxon
pKa (Strongest Basic)	-1.3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	165.06 Å²	ChemAxon
Rotatable Bond Count	18	ChemAxon
Refractivity	169.99 m³·mol⁻¹	ChemAxon
Polarizability	69.25 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

NPAtlas ID

NPA001050

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

553432

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

637849

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Kaya K, Mahakhant A, Keovara L, Sano T, Kubo T, Takagi H: Spiroidesin, a novel lipopeptide from the cyanobacterium Anabaena spiroides that inhibits cell growth of the cyanobacterium Microcystis aeruginosa. J Nat Prod. 2002 Jun;65(6):920-1. doi: 10.1021/np010660x. [PubMed:12088439 ]

Showing NP-Card for Spiroidesin (NP0004212)

MOL for NP0004212 (Spiroidesin)

3D MOL for NP0004212 (Spiroidesin)

3D SDF for NP0004212 (Spiroidesin)

3D-SDF for NP0004212 (Spiroidesin)

PDB for NP0004212 (Spiroidesin)

3D PDB for NP0004212 (Spiroidesin)

SMILES for NP0004212 (Spiroidesin)

INCHI for NP0004212 (Spiroidesin)

Structure for NP0004212 (Spiroidesin)

3D Structure for NP0004212 (Spiroidesin)