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Record Information
Version2.0
Created at2020-12-09 01:29:58 UTC
Updated at2021-07-15 16:47:52 UTC
NP-MRD IDNP0003968
Secondary Accession NumbersNone
Natural Product Identification
Common NamePetrobactin
Provided ByNPAtlasNPAtlas Logo
Description3-({4-[(3-{[(3,4-Dihydroxyphenyl)(hydroxy)methylidene]amino}propyl)amino]butyl}-C-hydroxycarbonimidoyl)-2-[({4-[(3-{[(3,4-dihydroxyphenyl)(hydroxy)methylidene]amino}propyl)amino]butyl}-C-hydroxycarbonimidoyl)methyl]-2-hydroxypropanoic acid belongs to the class of organic compounds known as benzamides. These are organic compounds containing a carboxamido substituent attached to a benzene ring. Petrobactin is found in Marinobacter hydrocarbonoclasticus. Petrobactin was first documented in 2002 (PMID: 11792199). Based on a literature review very few articles have been published on 3-({4-[(3-{[(3,4-dihydroxyphenyl)(hydroxy)methylidene]amino}propyl)amino]butyl}-C-hydroxycarbonimidoyl)-2-[({4-[(3-{[(3,4-dihydroxyphenyl)(hydroxy)methylidene]amino}propyl)amino]butyl}-C-hydroxycarbonimidoyl)methyl]-2-hydroxypropanoic acid.
Structure
Thumb
Synonyms
ValueSource
3-({4-[(3-{[(3,4-dihydroxyphenyl)(hydroxy)methylidene]amino}propyl)amino]butyl}-C-hydroxycarbonimidoyl)-2-[({4-[(3-{[(3,4-dihydroxyphenyl)(hydroxy)methylidene]amino}propyl)amino]butyl}-C-hydroxycarbonimidoyl)methyl]-2-hydroxypropanoateGenerator
Petrobactin sulfonateMeSH
Chemical FormulaC34H50N6O11
Average Mass718.8050 Da
Monoisotopic Mass718.35376 Da
IUPAC Name3-{[4-({3-[(3,4-dihydroxyphenyl)formamido]propyl}amino)butyl]carbamoyl}-2-({[4-({3-[(3,4-dihydroxyphenyl)formamido]propyl}amino)butyl]carbamoyl}methyl)-2-hydroxypropanoic acid
Traditional Name3-{[4-({3-[(3,4-dihydroxyphenyl)formamido]propyl}amino)butyl]carbamoyl}-2-({[4-({3-[(3,4-dihydroxyphenyl)formamido]propyl}amino)butyl]carbamoyl}methyl)-2-hydroxypropanoic acid
CAS Registry NumberNot Available
SMILES
OC(=O)C(O)(CC(=O)NCCCCNCCCNC(=O)C1=CC(O)=C(O)C=C1)CC(=O)NCCCCNCCCNC(=O)C1=CC(O)=C(O)C=C1
InChI Identifier
InChI=1S/C34H50N6O11/c41-25-9-7-23(19-27(25)43)31(47)39-17-5-13-35-11-1-3-15-37-29(45)21-34(51,33(49)50)22-30(46)38-16-4-2-12-36-14-6-18-40-32(48)24-8-10-26(42)28(44)20-24/h7-10,19-20,35-36,41-44,51H,1-6,11-18,21-22H2,(H,37,45)(H,38,46)(H,39,47)(H,40,48)(H,49,50)
InChI KeyGKIMOVAPSAVJHZ-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Marinobacter hydrocarbonoclasticusNPAtlas
Chemical Taxonomy
Description Belongs to the class of organic compounds known as benzamides. These are organic compounds containing a carboxamido substituent attached to a benzene ring.
KingdomOrganic compounds
Super ClassBenzenoids
ClassBenzene and substituted derivatives
Sub ClassBenzoic acids and derivatives
Direct ParentBenzamides
Alternative Parents
Substituents
  • Benzamide
  • Benzoyl
  • Catechol
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Phenol
  • Alpha-hydroxy acid
  • Fatty acyl
  • Fatty amide
  • N-acyl-amine
  • Hydroxy acid
  • Tertiary alcohol
  • Amino acid or derivatives
  • Amino acid
  • Secondary carboxylic acid amide
  • Carboxamide group
  • Secondary amine
  • Carboxylic acid derivative
  • Carboxylic acid
  • Secondary aliphatic amine
  • Monocarboxylic acid or derivatives
  • Organic nitrogen compound
  • Alcohol
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic oxide
  • Amine
  • Organooxygen compound
  • Organic oxygen compound
  • Organonitrogen compound
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.48ALOGPS
logP-6ChemAxon
logS-4.1ALOGPS
pKa (Strongest Acidic)3.47ChemAxon
pKa (Strongest Basic)10.46ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count13ChemAxon
Hydrogen Donor Count12ChemAxon
Polar Surface Area278.91 ŲChemAxon
Rotatable Bond Count25ChemAxon
Refractivity187.31 m³·mol⁻¹ChemAxon
Polarizability75.63 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA010109
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00043809
Chemspider ID9586399
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound11411510
PDB IDF8W
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Barbeau K, Zhang G, Live DH, Butler A: Petrobactin, a photoreactive siderophore produced by the oil-degrading marine bacterium Marinobacter hydrocarbonoclasticus. J Am Chem Soc. 2002 Jan 23;124(3):378-9. doi: 10.1021/ja0119088. [PubMed:11792199 ]