NP-MRD: Showing NP-Card for Bromosphaerone (NP0003827)

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Record Information

Version

2.0

Created at

2020-12-09 00:58:04 UTC

Updated at

2021-07-15 16:47:29 UTC

NP-MRD ID

NP0003827

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Bromosphaerone

Provided By

NPAtlas

Description

(1R,4aS,4bS,5S,6S,8S,8aS,10aS)-8-bromo-10a-(bromomethyl)-5,6-dihydroxy-5,8a-dimethyl-1-(propan-2-yl)-1,4,4a,4b,5,6,7,8,8a,9,10,10a-dodecahydrophenanthren-4-one belongs to the class of organic compounds known as hydrophenanthrenes. These are a phenanthrene derivative where at least one ring CC bond is substituted by hydrogenation. Bromosphaerone is found in Sphaerococcus coronopifolius and Staphylococcus aureus. Bromosphaerone was first documented in 2001 (PMID: 11520219). Based on a literature review very few articles have been published on (1R,4aS,4bS,5S,6S,8S,8aS,10aS)-8-bromo-10a-(bromomethyl)-5,6-dihydroxy-5,8a-dimethyl-1-(propan-2-yl)-1,4,4a,4b,5,6,7,8,8a,9,10,10a-dodecahydrophenanthren-4-one.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117503D          

 55 57  0  0  0  0            999 V2000
    3.2355   -1.4277    0.6470 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3965   -0.2444   -0.2208 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8532    0.2483    0.0012 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4792    0.9153   -0.0303 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5046    1.5238    1.2837 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4565    1.9236    1.9393 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1441    1.7572    1.3290 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7595    2.5165    1.6882 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0624    0.6623    0.3236 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2854    0.3201   -0.1306 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3249    0.2434    0.9802 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.2374    1.4697    0.8942 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7335    0.1350    2.2379 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2581   -0.9423    0.8411 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.4493   -0.5889    1.5400 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7092   -1.1085   -0.5874 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5517   -1.3943   -1.4711 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5434   -3.2207   -2.0659 Br  0  0  0  0  0  0  0  0  0  0  0  0
   -1.2197   -1.0026   -0.8713 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7385   -2.1451   -0.0169 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2649   -0.8675   -2.0334 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0701   -0.3346   -1.6521 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1169    0.8180   -0.7298 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9400    2.1633   -1.4351 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6000    2.4394   -2.4565 Br  0  0  0  0  0  0  0  0  0  0  0  0
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    4.9488    0.4094    1.0837 H   0  0  0  0  0  0  0  0  0  0  0  0
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    5.0032    1.2091   -0.5086 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0216    1.7157   -0.6861 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.4287   -0.2401    0.9226 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
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 11 14  1  0  0  0  0
 14 15  1  0  0  0  0
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 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
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 23  9  1  0  0  0  0
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  1 26  1  0  0  0  0
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  6 35  1  0  0  0  0
  9 36  1  1  0  0  0
 10 37  1  6  0  0  0
 12 38  1  0  0  0  0
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 24 55  1  0  0  0  0
M  END

     RDKit          3D

 55 57  0  0  0  0  0  0  0  0999 V2000
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    0.1441    1.7572    1.3290 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7595    2.5165    1.6882 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0624    0.6623    0.3236 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2854    0.3201   -0.1306 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3249    0.2434    0.9802 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -1.7335    0.1350    2.2379 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.4493   -0.5889    1.5400 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7092   -1.1085   -0.5874 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.2649   -0.8675   -2.0334 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0701   -0.3346   -1.6521 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.9400    2.1633   -1.4351 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6000    2.4394   -2.4565 Br  0  0  0  0  0  0  0  0  0  0  0  0
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    0.2538   -2.5478   -0.3774 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652306242117503D          

 55 57  0  0  0  0            999 V2000
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    3.3965   -0.2444   -0.2208 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8532    0.2483    0.0012 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4792    0.9153   -0.0303 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5046    1.5238    1.2837 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.4794    1.6546    1.7558 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5389    2.3976    2.9540 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4287   -0.2401    0.9226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7612    0.9966   -0.8783 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9290    2.1719    0.0949 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4054    1.9439    1.8838 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2865    1.1812    0.5736 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3948    0.4542    2.9161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9319   -1.8534    1.3318 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2548   -0.4831    2.5137 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3000   -0.2358   -0.8832 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3773   -2.0188   -0.5895 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6672   -0.7554   -2.3957 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2538   -2.5478   -0.3774 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5972   -1.9346    1.0364 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4117   -3.0319   -0.0875 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7620   -0.2918   -2.8356 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1348   -1.8861   -2.4507 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5731   -1.1947   -1.1088 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6352   -0.1964   -2.5983 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1700    2.9885   -0.6899 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8318    2.2604   -2.1349 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  1  0  0  0
 11 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  1  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  6  0  0  0
 24 25  1  0  0  0  0
 23  4  1  0  0  0  0
 23  9  1  0  0  0  0
 19 10  1  0  0  0  0
  1 26  1  0  0  0  0
  1 27  1  0  0  0  0
  1 28  1  0  0  0  0
  2 29  1  6  0  0  0
  3 30  1  0  0  0  0
  3 31  1  0  0  0  0
  3 32  1  0  0  0  0
  4 33  1  6  0  0  0
  5 34  1  0  0  0  0
  6 35  1  0  0  0  0
  9 36  1  1  0  0  0
 10 37  1  6  0  0  0
 12 38  1  0  0  0  0
 12 39  1  0  0  0  0
 12 40  1  0  0  0  0
 13 41  1  0  0  0  0
 14 42  1  1  0  0  0
 15 43  1  0  0  0  0
 16 44  1  0  0  0  0
 16 45  1  0  0  0  0
 17 46  1  6  0  0  0
 20 47  1  0  0  0  0
 20 48  1  0  0  0  0
 20 49  1  0  0  0  0
 21 50  1  0  0  0  0
 21 51  1  0  0  0  0
 22 52  1  0  0  0  0
 22 53  1  0  0  0  0
 24 54  1  0  0  0  0
 24 55  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0003827

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@@]1([H])C([H])([H])[C@]([H])(Br)[C@@]2(C([H])([H])[H])C([H])([H])C([H])([H])[C@]3(C([H])([H])Br)[C@@]([H])(C([H])=C([H])C(=O)[C@@]3([H])[C@]2([H])[C@@]1(O[H])C([H])([H])[H])C([H])(C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C20H30Br2O3/c1-11(2)12-5-6-13(23)16-17-18(3,7-8-20(12,16)10-21)14(22)9-15(24)19(17,4)25/h5-6,11-12,14-17,24-25H,7-10H2,1-4H3/t12-,14-,15-,16-,17-,18+,19+,20-/m0/s1

> <INCHI_KEY>
JGVFMEFXYFJJSK-KTPFSLFISA-N

> <FORMULA>
C20H30Br2O3

> <MOLECULAR_WEIGHT>
478.265

> <EXACT_MASS>
476.056171

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
55

> <JCHEM_AVERAGE_POLARIZABILITY>
43.21881983158022

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,4aS,4bS,5S,6S,8S,8aS,10aS)-8-bromo-10a-(bromomethyl)-5,6-dihydroxy-5,8a-dimethyl-1-(propan-2-yl)-1,4,4a,4b,5,6,7,8,8a,9,10,10a-dodecahydrophenanthren-4-one

> <ALOGPS_LOGP>
4.09

> <JCHEM_LOGP>
3.7522915459999986

> <ALOGPS_LOGS>
-5.09

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.974091921708876

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.571229366314753

> <JCHEM_PKA_STRONGEST_BASIC>
-3.252227054097836

> <JCHEM_POLAR_SURFACE_AREA>
57.53

> <JCHEM_REFRACTIVITY>
107.91679999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.90e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,4aS,4bS,5S,6S,8S,8aS,10aS)-8-bromo-10a-(bromomethyl)-5,6-dihydroxy-1-isopropyl-5,8a-dimethyl-1,4a,4b,6,7,8,9,10-octahydrophenanthren-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 55 57  0  0  0  0  0  0  0  0999 V2000
    3.2355   -1.4277    0.6470 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3965   -0.2444   -0.2208 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8532    0.2483    0.0012 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4792    0.9153   -0.0303 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5046    1.5238    1.2837 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4565    1.9236    1.9393 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1441    1.7572    1.3290 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7595    2.5165    1.6882 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0624    0.6623    0.3236 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2854    0.3201   -0.1306 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3249    0.2434    0.9802 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.2374    1.4697    0.8942 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7335    0.1350    2.2379 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2581   -0.9423    0.8411 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.4493   -0.5889    1.5400 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7092   -1.1085   -0.5874 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5517   -1.3943   -1.4711 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5434   -3.2207   -2.0659 Br  0  0  0  0  0  0  0  0  0  0  0  0
   -1.2197   -1.0026   -0.8713 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7385   -2.1451   -0.0169 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2649   -0.8675   -2.0334 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0701   -0.3346   -1.6521 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1169    0.8180   -0.7298 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9400    2.1633   -1.4351 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6000    2.4394   -2.4565 Br  0  0  0  0  0  0  0  0  0  0  0  0
    4.1254   -1.5920    1.3385 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2448   -2.4056    0.0718 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3773   -1.4649    1.3136 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4354   -0.5674   -1.2838 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9488    0.4094    1.0837 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5630   -0.5423   -0.2859 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0032    1.2091   -0.5086 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0216    1.7157   -0.6861 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4794    1.6546    1.7558 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5389    2.3976    2.9540 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4287   -0.2401    0.9226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7612    0.9966   -0.8783 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9290    2.1719    0.0949 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4054    1.9439    1.8838 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2865    1.1812    0.5736 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3948    0.4542    2.9161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9319   -1.8534    1.3318 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2548   -0.4831    2.5137 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3000   -0.2358   -0.8832 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3773   -2.0188   -0.5895 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6672   -0.7554   -2.3957 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2538   -2.5478   -0.3774 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5972   -1.9346    1.0364 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4117   -3.0319   -0.0875 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7620   -0.2918   -2.8356 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1348   -1.8861   -2.4507 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5731   -1.1947   -1.1088 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6352   -0.1964   -2.5983 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1700    2.9885   -0.6899 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8318    2.2604   -2.1349 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 11 13  1  1
 11 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  1
 19 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  6
 24 25  1  0
 23  4  1  0
 23  9  1  0
 19 10  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  2 29  1  6
  3 30  1  0
  3 31  1  0
  3 32  1  0
  4 33  1  6
  5 34  1  0
  6 35  1  0
  9 36  1  1
 10 37  1  6
 12 38  1  0
 12 39  1  0
 12 40  1  0
 13 41  1  0
 14 42  1  1
 15 43  1  0
 16 44  1  0
 16 45  1  0
 17 46  1  6
 20 47  1  0
 20 48  1  0
 20 49  1  0
 21 50  1  0
 21 51  1  0
 22 52  1  0
 22 53  1  0
 24 54  1  0
 24 55  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       3.236  -1.428   0.647  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.397  -0.244  -0.221  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.853   0.248   0.001  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.479   0.915  -0.030  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.505   1.524   1.284  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.456   1.924   1.939  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.144   1.757   1.329  0.00  0.00           C+0
HETATM    8  O   UNK     0      -0.760   2.517   1.688  0.00  0.00           O+0
HETATM    9  C   UNK     0       0.062   0.662   0.324  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.285   0.320  -0.131  0.00  0.00           C+0
HETATM   11  C   UNK     0      -2.325   0.243   0.980  0.00  0.00           C+0
HETATM   12  C   UNK     0      -3.237   1.470   0.894  0.00  0.00           C+0
HETATM   13  O   UNK     0      -1.734   0.135   2.238  0.00  0.00           O+0
HETATM   14  C   UNK     0      -3.258  -0.942   0.841  0.00  0.00           C+0
HETATM   15  O   UNK     0      -4.449  -0.589   1.540  0.00  0.00           O+0
HETATM   16  C   UNK     0      -3.709  -1.109  -0.587  0.00  0.00           C+0
HETATM   17  C   UNK     0      -2.552  -1.394  -1.471  0.00  0.00           C+0
HETATM   18 Br   UNK     0      -2.543  -3.221  -2.066  0.00  0.00          Br+0
HETATM   19  C   UNK     0      -1.220  -1.003  -0.871  0.00  0.00           C+0
HETATM   20  C   UNK     0      -0.739  -2.145  -0.017  0.00  0.00           C+0
HETATM   21  C   UNK     0      -0.265  -0.868  -2.033  0.00  0.00           C+0
HETATM   22  C   UNK     0       1.070  -0.335  -1.652  0.00  0.00           C+0
HETATM   23  C   UNK     0       1.117   0.818  -0.730  0.00  0.00           C+0
HETATM   24  C   UNK     0       0.940   2.163  -1.435  0.00  0.00           C+0
HETATM   25 Br   UNK     0      -0.600   2.439  -2.457  0.00  0.00          Br+0
HETATM   26  H   UNK     0       4.125  -1.592   1.339  0.00  0.00           H+0
HETATM   27  H   UNK     0       3.245  -2.406   0.072  0.00  0.00           H+0
HETATM   28  H   UNK     0       2.377  -1.465   1.314  0.00  0.00           H+0
HETATM   29  H   UNK     0       3.435  -0.567  -1.284  0.00  0.00           H+0
HETATM   30  H   UNK     0       4.949   0.409   1.084  0.00  0.00           H+0
HETATM   31  H   UNK     0       5.563  -0.542  -0.286  0.00  0.00           H+0
HETATM   32  H   UNK     0       5.003   1.209  -0.509  0.00  0.00           H+0
HETATM   33  H   UNK     0       3.022   1.716  -0.686  0.00  0.00           H+0
HETATM   34  H   UNK     0       3.479   1.655   1.756  0.00  0.00           H+0
HETATM   35  H   UNK     0       1.539   2.398   2.954  0.00  0.00           H+0
HETATM   36  H   UNK     0       0.429  -0.240   0.923  0.00  0.00           H+0
HETATM   37  H   UNK     0      -1.761   0.997  -0.878  0.00  0.00           H+0
HETATM   38  H   UNK     0      -2.929   2.172   0.095  0.00  0.00           H+0
HETATM   39  H   UNK     0      -3.405   1.944   1.884  0.00  0.00           H+0
HETATM   40  H   UNK     0      -4.287   1.181   0.574  0.00  0.00           H+0
HETATM   41  H   UNK     0      -2.395   0.454   2.916  0.00  0.00           H+0
HETATM   42  H   UNK     0      -2.932  -1.853   1.332  0.00  0.00           H+0
HETATM   43  H   UNK     0      -4.255  -0.483   2.514  0.00  0.00           H+0
HETATM   44  H   UNK     0      -4.300  -0.236  -0.883  0.00  0.00           H+0
HETATM   45  H   UNK     0      -4.377  -2.019  -0.590  0.00  0.00           H+0
HETATM   46  H   UNK     0      -2.667  -0.755  -2.396  0.00  0.00           H+0
HETATM   47  H   UNK     0       0.254  -2.548  -0.377  0.00  0.00           H+0
HETATM   48  H   UNK     0      -0.597  -1.935   1.036  0.00  0.00           H+0
HETATM   49  H   UNK     0      -1.412  -3.032  -0.088  0.00  0.00           H+0
HETATM   50  H   UNK     0      -0.762  -0.292  -2.836  0.00  0.00           H+0
HETATM   51  H   UNK     0      -0.135  -1.886  -2.451  0.00  0.00           H+0
HETATM   52  H   UNK     0       1.573  -1.195  -1.109  0.00  0.00           H+0
HETATM   53  H   UNK     0       1.635  -0.196  -2.598  0.00  0.00           H+0
HETATM   54  H   UNK     0       1.170   2.989  -0.690  0.00  0.00           H+0
HETATM   55  H   UNK     0       1.832   2.260  -2.135  0.00  0.00           H+0
CONECT    1    2   26   27   28                                             
CONECT    2    1    3    4   29                                             
CONECT    3    2   30   31   32                                             
CONECT    4    2    5   23   33                                             
CONECT    5    4    6   34                                                  
CONECT    6    5    7   35                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   23   36                                             
CONECT   10    9   11   19   37                                             
CONECT   11   10   12   13   14                                             
CONECT   12   11   38   39   40                                             
CONECT   13   11   41                                                       
CONECT   14   11   15   16   42                                             
CONECT   15   14   43                                                       
CONECT   16   14   17   44   45                                             
CONECT   17   16   18   19   46                                             
CONECT   18   17                                                            
CONECT   19   17   20   21   10                                             
CONECT   20   19   47   48   49                                             
CONECT   21   19   22   50   51                                             
CONECT   22   21   23   52   53                                             
CONECT   23   22   24    4    9                                             
CONECT   24   23   25   54   55                                             
CONECT   25   24                                                            
CONECT   26    1                                                            
CONECT   27    1                                                            
CONECT   28    1                                                            
CONECT   29    2                                                            
CONECT   30    3                                                            
CONECT   31    3                                                            
CONECT   32    3                                                            
CONECT   33    4                                                            
CONECT   34    5                                                            
CONECT   35    6                                                            
CONECT   36    9                                                            
CONECT   37   10                                                            
CONECT   38   12                                                            
CONECT   39   12                                                            
CONECT   40   12                                                            
CONECT   41   13                                                            
CONECT   42   14                                                            
CONECT   43   15                                                            
CONECT   44   16                                                            
CONECT   45   16                                                            
CONECT   46   17                                                            
CONECT   47   20                                                            
CONECT   48   20                                                            
CONECT   49   20                                                            
CONECT   50   21                                                            
CONECT   51   21                                                            
CONECT   52   22                                                            
CONECT   53   22                                                            
CONECT   54   24                                                            
CONECT   55   24                                                            
MASTER        0    0    0    0    0    0    0    0   55    0  114    0
END

RDKit          3D

55 57  0  0  0  0  0  0  0  0999 V2000
    3.2355   -1.4277    0.6470 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3965   -0.2444   -0.2208 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8532    0.2483    0.0012 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4792    0.9153   -0.0303 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5046    1.5238    1.2837 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4565    1.9236    1.9393 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1441    1.7572    1.3290 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7595    2.5165    1.6882 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0624    0.6623    0.3236 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2854    0.3201   -0.1306 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3249    0.2434    0.9802 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.2374    1.4697    0.8942 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7335    0.1350    2.2379 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2581   -0.9423    0.8411 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.4493   -0.5889    1.5400 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7092   -1.1085   -0.5874 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5517   -1.3943   -1.4711 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5434   -3.2207   -2.0659 Br  0  0  0  0  0  0  0  0  0  0  0  0
   -1.2197   -1.0026   -0.8713 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7385   -2.1451   -0.0169 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2649   -0.8675   -2.0334 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0701   -0.3346   -1.6521 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1169    0.8180   -0.7298 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9400    2.1633   -1.4351 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6000    2.4394   -2.4565 Br  0  0  0  0  0  0  0  0  0  0  0  0
    4.1254   -1.5920    1.3385 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2448   -2.4056    0.0718 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3773   -1.4649    1.3136 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4354   -0.5674   -1.2838 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9488    0.4094    1.0837 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5630   -0.5423   -0.2859 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0032    1.2091   -0.5086 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0216    1.7157   -0.6861 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4794    1.6546    1.7558 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5389    2.3976    2.9540 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4287   -0.2401    0.9226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7612    0.9966   -0.8783 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9290    2.1719    0.0949 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4054    1.9439    1.8838 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2865    1.1812    0.5736 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3948    0.4542    2.9161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9319   -1.8534    1.3318 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2548   -0.4831    2.5137 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3000   -0.2358   -0.8832 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3773   -2.0188   -0.5895 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6672   -0.7554   -2.3957 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2538   -2.5478   -0.3774 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5972   -1.9346    1.0364 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4117   -3.0319   -0.0875 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7620   -0.2918   -2.8356 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1348   -1.8861   -2.4507 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5731   -1.1947   -1.1088 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6352   -0.1964   -2.5983 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1700    2.9885   -0.6899 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8318    2.2604   -2.1349 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 11 13  1  1
 11 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  1
 19 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  6
 24 25  1  0
 23  4  1  0
 23  9  1  0
 19 10  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  2 29  1  6
  3 30  1  0
  3 31  1  0
  3 32  1  0
  4 33  1  6
  5 34  1  0
  6 35  1  0
  9 36  1  1
 10 37  1  6
 12 38  1  0
 12 39  1  0
 12 40  1  0
 13 41  1  0
 14 42  1  1
 15 43  1  0
 16 44  1  0
 16 45  1  0
 17 46  1  6
 20 47  1  0
 20 48  1  0
 20 49  1  0
 21 50  1  0
 21 51  1  0
 22 52  1  0
 22 53  1  0
 24 54  1  0
 24 55  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₀H₃₀Br₂O₃

Average Mass

478.2650 Da

Monoisotopic Mass

476.05617 Da

IUPAC Name

(1R,4aS,4bS,5S,6S,8S,8aS,10aS)-8-bromo-10a-(bromomethyl)-5,6-dihydroxy-5,8a-dimethyl-1-(propan-2-yl)-1,4,4a,4b,5,6,7,8,8a,9,10,10a-dodecahydrophenanthren-4-one

Traditional Name

(1R,4aS,4bS,5S,6S,8S,8aS,10aS)-8-bromo-10a-(bromomethyl)-5,6-dihydroxy-1-isopropyl-5,8a-dimethyl-1,4a,4b,6,7,8,9,10-octahydrophenanthren-4-one

CAS Registry Number

Not Available

SMILES

CC(C)[C@@H]1C=CC(=O)[C@H]2[C@@H]3[C@](C)(O)[C@@H](O)C[C@H](Br)[C@@]3(C)CC[C@]12CBr

InChI Identifier

InChI=1S/C20H30Br2O3/c1-11(2)12-5-6-13(23)16-17-18(3,7-8-20(12,16)10-21)14(22)9-15(24)19(17,4)25/h5-6,11-12,14-17,24-25H,7-10H2,1-4H3/t12-,14-,15-,16-,17-,18+,19+,20-/m0/s1

InChI Key

JGVFMEFXYFJJSK-KTPFSLFISA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Sphaerococcus coronopifolius	-	KNApSAcK
Staphylococcus aureus	NPAtlas	11520219

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hydrophenanthrenes. These are a phenanthrene derivative where at least one ring CC bond is substituted by hydrogenation.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Phenanthrenes and derivatives

Sub Class

Hydrophenanthrenes

Direct Parent

Hydrophenanthrenes

Alternative Parents

Substituents

Hydrophenanthrene
Cyclohexenone
Cyclic alcohol
Tertiary alcohol
1,2-diol
Secondary alcohol
Ketone
Organic oxygen compound
Organobromide
Organohalogen compound
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Carbonyl group
Alkyl halide
Alkyl bromide
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.09	ALOGPS
logP	3.75	ChemAxon
logS	-5.1	ALOGPS
pKa (Strongest Acidic)	13.57	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	57.53 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	107.92 m³·mol⁻¹	ChemAxon
Polarizability	43.22 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA018301

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9298766

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11123637

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Etahiri S, Bultel-Ponce V, Caux C, Guyot M: New bromoditerpenes from the red alga Sphaerococcus coronopifolius. J Nat Prod. 2001 Aug;64(8):1024-7. doi: 10.1021/np0002684. [PubMed:11520219 ]

Showing NP-Card for Bromosphaerone (NP0003827)

MOL for NP0003827 (Bromosphaerone)

3D MOL for NP0003827 (Bromosphaerone)

3D SDF for NP0003827 (Bromosphaerone)

3D-SDF for NP0003827 (Bromosphaerone)

PDB for NP0003827 (Bromosphaerone)

3D PDB for NP0003827 (Bromosphaerone)

SMILES for NP0003827 (Bromosphaerone)

INCHI for NP0003827 (Bromosphaerone)

Structure for NP0003827 (Bromosphaerone)

3D Structure for NP0003827 (Bromosphaerone)